pycom09g07230

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
5433385 .. 5434616
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07230.3

Sequence Viewer

Length: 972 bp
ATGCCAGCTTTATTCACGCGAGGGCGTCACAACTCAAATTTATATCATCAAAACACACACAGTTTCATATTCGTCTCTAAAGCAATCAAAATGTCTTATTCTTCTAAGCTCTCAATGGCCATGCTTCCTTCTTTGTTCATAACTTGTGTCATGGCCATGGCTGCCTCGGCTGGCAATTTCTATCAAGATTTTGACGTTACATTCGGCGATGGACGTGCCAAGATACTCAACGGAGGACAACTCCTCACTCTTAACCTTGATCAGACTTCCGGCTCCGGTTTCAAATCCAAGAACGAGTACTTATTTGGAAGGATTGACATGCAGATCAAGCTCGTCTCAGGCAACTCAGCGGGAACTGTCACTGCCTACTATTTATCTTCTGAAGGTCCTACTCATGACGAAATCGACTTTGAGTTTTTGGGAAACCTATCTGGGGATCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTTTGGTTTGATCCTACAAAGGCCTTCCACACCTACTCCATTGTTTGGAACGCACAACGTATTATATTTTTGGTGGATAAAATTCCAATTAGAGTGTTCAACAACTTGGAATCAGTTGGTATCCCATTCCCTAAAAACCAGCCCATGAGGATTTACTCAAGCCTGTGGAATGCAGATGACTGGGCAACAAGAGGTGGTCTTGTCAAGACTGATTGGACTCAAGCTCCTTTCACCGCCTCTTACAGAAACTTCAAGGCCGATGCTTGTACTGCTGGCTCATCATCCTCCTGTGCCTCTGCTGCATCTACCAATTCAGTAGGGGACAGTGCATGGCAGACTCAAGGGCTCGATGCAGCCGGCCGTAACCGGCTTCGATGGGTGCAACAGAAGTTCATGGTCTACAACTACTGCAGTGACCTTAAACGCTTCCCACAAGGCCTCCCAGCTGAATGCAGAAGATCAAGGTTCTAA

Protein Analysis

324

Amino Acids

36.17

Weight (kDa)

9.22

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 546
AccI GTMKAC 1 cut(s) 900
AccII CGCG 1 cut(s) 19
AciI CCGC 2 cut(s) 350, 735
AclWI GGATC 3 cut(s) 431, 444, 506
AcoI YGGCCR 3 cut(s) 117, 153, 859
AcsI RAATTY 2 cut(s) 37, 582
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 2 cut(s) 299, 769
AfiI CCNNNNNNNGG 2 cut(s) 433, 546
AgsI TTSAA 3 cut(s) 283, 601, 754
AjiI CACGTC 1 cut(s) 215
AloI GAACNNNNNNTCC 2 cut(s) 480, 512
AluBI AGCT 5 cut(s) 8, 109, 331, 725, 947
AluI AGCT 5 cut(s) 8, 109, 331, 725, 947
Alw26I GTCTC 2 cut(s) 79, 340
AlwI GGATC 3 cut(s) 431, 444, 506
AoxI GGCC 6 cut(s) 117, 153, 522, 756, 859, 937
ApeKI GCWGC 3 cut(s) 161, 800, 854
ApoI RAATTY 2 cut(s) 37, 582
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 724
AvaII GGWCC 1 cut(s) 386
BalI TGGCCA 2 cut(s) 119, 155
BamHI GGATCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 849
BbvI GCAGC 3 cut(s) 148, 787, 866
BccI CCATC 3 cut(s) 203, 507, 870
BceAI ACGGC 1 cut(s) 846
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciVI GTATCC 1 cut(s) 632
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 2 cut(s) 79, 340
BfmI CTRYAG 1 cut(s) 910
BfuI GTATCC 1 cut(s) 632
BisI GCNGC 3 cut(s) 162, 801, 855
BlsI GCNGC 3 cut(s) 163, 802, 856
BmcAI AGTACT 1 cut(s) 299
Bme18I GGWCC 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 2 cut(s) 274, 438
BmrI ACTGGG 1 cut(s) 691
BmsI GCATC 3 cut(s) 751, 812, 841
BmuI ACTGGG 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 225, 257
BpuEI CTTGAG 3 cut(s) 643, 705, 825
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 156, 165, 469
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 6 cut(s) 521, 551, 709, 739, 924, 954
Bsc4I CCNNNNNNNGG 2 cut(s) 433, 546
Bse118I RCCGGY 2 cut(s) 857, 867
Bse1I ACTGG 1 cut(s) 686
BseDI CCNNGG 3 cut(s) 156, 165, 469
BseGI GGATG 1 cut(s) 782
BseLI CCNNNNNNNGG 2 cut(s) 433, 546
BseMII CTCAG 2 cut(s) 351, 360
BseNI ACTGG 1 cut(s) 686
BseRI GAGGAG 1 cut(s) 233
BseX3I CGGCCG 1 cut(s) 859
BseXI GCAGC 3 cut(s) 148, 787, 866
BseYI CCCAGC 1 cut(s) 943
Bsh1236I CGCG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 862
BshFI GGCC 6 cut(s) 119, 155, 524, 758, 861, 939
BsiEI CGRYCG 1 cut(s) 862
BsiSI CCGG 4 cut(s) 270, 276, 858, 868
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 2 cut(s) 433, 546
BsmAI GTCTC 2 cut(s) 79, 340
BsmBI CGTCTC 2 cut(s) 79, 340
BsmFI GGGAC 1 cut(s) 836
BsmI GAATGC 2 cut(s) 676, 956
BsnI GGCC 6 cut(s) 119, 155, 524, 758, 861, 939
Bsp1286I GDGCHC 1 cut(s) 849
Bsp143I GATC 5 cut(s) 259, 324, 436, 511, 959
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 350, 735
BspANI GGCC 6 cut(s) 119, 155, 524, 758, 861, 939
BspCNI CTCAG 2 cut(s) 350, 359
BspFNI CGCG 1 cut(s) 19
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 274, 438
BspMAI CTGCAG 1 cut(s) 914
BspPI GGATC 3 cut(s) 431, 444, 506
BsrFI RCCGGY 2 cut(s) 857, 867
BsrI ACTGG 1 cut(s) 686
BssAI RCCGGY 2 cut(s) 857, 867
BssECI CCNNGG 3 cut(s) 156, 165, 469
BssMI GATC 5 cut(s) 259, 324, 436, 511, 959
BssNI GRCGYC 1 cut(s) 25
BssT1I CCWWGG 2 cut(s) 156, 469
Bst4CI ACNGT 3 cut(s) 62, 358, 827
BstACI GRCGYC 1 cut(s) 25
BstC8I GCNNGC 4 cut(s) 6, 172, 775, 859
BstDEI CTNAG 3 cut(s) 105, 337, 346
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 782
BstFNI CGCG 1 cut(s) 19
BstKTI GATC 5 cut(s) 262, 327, 439, 514, 962
BstMAI GTCTC 2 cut(s) 79, 340
BstMBI GATC 5 cut(s) 259, 324, 436, 511, 959
BstMCI CGRYCG 1 cut(s) 862
BstMWI GCNNNNNNNGC 5 cut(s) 161, 167, 328, 770, 800
BstNSI RCATGY 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 910
BstUI CGCG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 148, 787, 866
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BstZI CGGCCG 1 cut(s) 859
BsuI GTATCC 1 cut(s) 632
BsuRI GGCC 6 cut(s) 119, 155, 524, 758, 861, 939
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 782
BtsI GCAGTG 2 cut(s) 360, 919
BtsIMutI CAGTG 3 cut(s) 360, 832, 919
Cac8I GCNNGC 4 cut(s) 6, 172, 775, 859
CciI TCATGA 1 cut(s) 394
Cfr10I RCCGGY 2 cut(s) 857, 867
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 298, 768
CviAII CATG 8 cut(s) 121, 151, 157, 319, 395, 646, 831, 895
CviQI GTAC 2 cut(s) 298, 768
DdeI CTNAG 3 cut(s) 105, 337, 346
DpnI GATC 5 cut(s) 261, 326, 438, 513, 961
DpnII GATC 5 cut(s) 259, 324, 436, 511, 959
EaeI YGGCCR 3 cut(s) 117, 153, 859
EagI CGGCCG 1 cut(s) 859
EclXI CGGCCG 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 156, 469
Eco147I AGGCCT 2 cut(s) 524, 939
Eco24I GRGCYC 1 cut(s) 849
Eco47I GGWCC 1 cut(s) 386
Eco52I CGGCCG 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 156, 469
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 2 cut(s) 156, 469
Esp3I CGTCTC 2 cut(s) 79, 340
FaeI CATG 8 cut(s) 124, 154, 160, 322, 398, 649, 834, 898
FaqI GGGAC 1 cut(s) 836
FatI CATG 8 cut(s) 120, 150, 156, 318, 394, 645, 830, 894
FauI CCCGC 1 cut(s) 343
FbaI TGATCA 1 cut(s) 259
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 3 cut(s) 162, 801, 855
FokI GGATG 1 cut(s) 769
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 3 cut(s) 162, 801, 855
GluI GCNGC 3 cut(s) 162, 801, 855
GsaI CCCAGC 1 cut(s) 947
HaeIII GGCC 6 cut(s) 119, 155, 524, 758, 861, 939
HapII CCGG 4 cut(s) 270, 276, 858, 868
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 8 cut(s) 124, 154, 160, 322, 398, 649, 834, 898
HinfI GANTC 3 cut(s) 611, 718, 838
HpaII CCGG 4 cut(s) 270, 276, 858, 868
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 1 cut(s) 901
Hpy188I TCNGA 2 cut(s) 264, 382
Hpy188III TCNNGA 3 cut(s) 185, 395, 706
Hpy8I GTNNAC 1 cut(s) 901
HpyAV CCTTC 4 cut(s) 138, 303, 377, 535
HpyCH4III ACNGT 3 cut(s) 62, 358, 827
HpyCH4IV ACGT 3 cut(s) 195, 214, 559
HpyCH4V TGCA 8 cut(s) 322, 674, 803, 830, 854, 883, 912, 954
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 167, 328, 770, 800
HpyF3I CTNAG 3 cut(s) 105, 337, 346
HpySE526I ACGT 3 cut(s) 195, 214, 559
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 8 cut(s) 124, 154, 160, 322, 398, 649, 834, 898
KroI GCCGGC 1 cut(s) 857
KroNI GCCGGC 1 cut(s) 859
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 5 cut(s) 259, 324, 436, 511, 959
LmnI GCTCC 2 cut(s) 278, 730
Lsp1109I GCAGC 3 cut(s) 148, 787, 866
LweI GCATC 3 cut(s) 751, 812, 841
MaeII ACGT 3 cut(s) 195, 214, 559
MaeIII GTNAC 5 cut(s) 26, 196, 358, 863, 914
MalI GATC 5 cut(s) 261, 326, 438, 513, 961
MboI GATC 5 cut(s) 259, 324, 436, 511, 959
MboII GAAGA 3 cut(s) 93, 369, 969
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 849
MlsI TGGCCA 2 cut(s) 119, 155
MluCI AATT 6 cut(s) 37, 175, 494, 582, 588, 811
MluNI TGGCCA 2 cut(s) 119, 155
MlyI GAGTC 2 cut(s) 712, 832
Mox20I TGGCCA 2 cut(s) 119, 155
MroNI GCCGGC 1 cut(s) 857
MscI TGGCCA 2 cut(s) 119, 155
MseI TTAA 2 cut(s) 252, 921
MslI CAYNNNNRTG 2 cut(s) 155, 456
Msp20I TGGCCA 2 cut(s) 119, 155
MspA1I CMGCKG 2 cut(s) 350, 947
MspI CCGG 4 cut(s) 270, 276, 858, 868
Mva1269I GAATGC 2 cut(s) 676, 956
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 5 cut(s) 161, 167, 328, 770, 800
NaeI GCCGGC 1 cut(s) 859
NcoI CCATGG 1 cut(s) 156
NdeII GATC 5 cut(s) 259, 324, 436, 511, 959
NgoMIV GCCGGC 1 cut(s) 857
NlaIII CATG 8 cut(s) 124, 154, 160, 322, 398, 649, 834, 898
NlaIV GGNNCC 2 cut(s) 274, 438
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 3 cut(s) 26, 358, 914
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 394
PceI AGGCCT 2 cut(s) 524, 939
PctI GAATGC 2 cut(s) 676, 956
PdiI GCCGGC 1 cut(s) 859
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 546
PkrI GCNGC 3 cut(s) 163, 802, 856
PleI GAGTC 2 cut(s) 712, 832
PpsI GAGTC 2 cut(s) 712, 832
PpuMI RGGWCCY 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 943
PspN4I GGNNCC 2 cut(s) 274, 438
PspPI GGNCC 1 cut(s) 386
PspPPI RGGWCCY 1 cut(s) 386
PstI CTGCAG 1 cut(s) 914
PsuI RGATCY 1 cut(s) 436
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 2 cut(s) 299, 769
RsaNI GTAC 2 cut(s) 298, 768
RseI CAYNNNNRTG 2 cut(s) 155, 456
SaqAI TTAA 2 cut(s) 252, 921
SatI GCNGC 3 cut(s) 162, 801, 855
Sau3AI GATC 5 cut(s) 259, 324, 436, 511, 959
Sau96I GGNCC 1 cut(s) 386
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 2 cut(s) 712, 832
SduI GDGCHC 1 cut(s) 849
SfaNI GCATC 3 cut(s) 751, 812, 841
SfcI CTRYAG 1 cut(s) 910
SinI GGWCC 1 cut(s) 386
SmiMI CAYNNNNRTG 2 cut(s) 155, 456
SmlI CTYRAG 3 cut(s) 658, 720, 840
SmoI CTYRAG 3 cut(s) 658, 720, 840
Sse9I AATT 6 cut(s) 37, 175, 494, 582, 588, 811
SseBI AGGCCT 2 cut(s) 524, 939
SsiI CCGC 2 cut(s) 350, 735
StuI AGGCCT 2 cut(s) 524, 939
StyI CCWWGG 2 cut(s) 156, 469
TaaI ACNGT 3 cut(s) 62, 358, 827
TaiI ACGT 3 cut(s) 198, 217, 562
TaqI TCGA 3 cut(s) 405, 849, 874
TasI AATT 6 cut(s) 37, 175, 494, 582, 588, 811
TatI WGTACW 2 cut(s) 297, 767
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 252, 921
Tru9I TTAA 2 cut(s) 252, 921
TscAI CASTG 3 cut(s) 367, 832, 919
TseFI GTSAC 3 cut(s) 26, 358, 914
TseI GCWGC 3 cut(s) 161, 800, 854
Tsp45I GTSAC 3 cut(s) 26, 358, 914
TspDTI ATGAA 3 cut(s) 55, 127, 883
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 3 cut(s) 367, 832, 919
Van91I CCANNNNNTGG 1 cut(s) 546
VpaK11BI GGWCC 1 cut(s) 386
XapI RAATTY 2 cut(s) 37, 582
XceI RCATGY 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 900
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.