Rroxscaffold_2G00095990

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
17268679 .. 17270013
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095990.1

Sequence Viewer

Length: 894 bp
ATGTCTTCCTCTACGGTCTCAGTGATGCTTTGCCTCTCTGCTGTTTTCTTAAGTTCTTTCATGGCCATGGCTGCAGCCGGTAATTTCTATCAAGACTTTGACATCACATTCGGCGACCAACGTGCTAAGATATTCAACGGAGGACAACATCTCACACTCGACCTCGACCAGTATTCCGGATCTGGTTTCAAGTCCAAGAAGGAGTACTTGTTTGGAAGGATCGACATGCAAATCAAACTTGTCGCTGGCAACTCAGCTGGCACTGTCACTGCATATTATTTGTCTTCTCAAGGTCCAACTCATGATGAAATCGATTTTGAGTTTTTGGGGAACTCTTCTGGTGAACCCTACACTCTCCACACCAATGTGTTCAGCCAGGGGAAGGGGAACAGAGAACAACAATTCCATCTTTGGTTTGATCCTACCAACGCCTTCCACACATACTCGCTTGTCTGGAACAGCCAACGCATTATATTCTTGGTGGATAATATTCCAATTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCGAGCCTGTGGAATGCTGATGACTGGGCTACACAAGGTGGGCGTGTGAAGACTGACTGGACTCACGCTCCTTTCACTGCCTCGTACAGAAACTTCAAGGCCAATGCCTGCGTCGCTGGCTCATCGTCATCATCATGCGGTGTCTCCACTTCTGCTTCAACTAATTCCTTAACTGATCAACAGGGTACATGGCACAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATAAGATGGGTGCAGCAGAAGTTCATGGTCTACAACTACTGTACTGACCTAAAACGATTTCCCCAAGGTCTTCCGGTGGAATGTAGGCGATCAAGATTCTAG

Protein Analysis

297

Amino Acids

33.33

Weight (kDa)

8.54

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 30 - 209 1.3e-67 Glycosyl hydrolases family 16
XET_C PF06955 250 - 292 6.2e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 822
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 2 cut(s) 702, 777
AclWI GGATC 3 cut(s) 187, 227, 413
AcoI YGGCCR 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 4 cut(s) 206, 650, 751, 835
AfiI CCNNNNNNNGG 1 cut(s) 382
AflII CTTAAG 1 cut(s) 49
AgsI TTSAA 5 cut(s) 136, 190, 508, 661, 723
AjnI CCWGG 1 cut(s) 375
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 22, 712
AlwI GGATC 3 cut(s) 187, 227, 413
Ama87I CYCGRG 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 3 cut(s) 63, 663, 781
ApeKI GCWGC 3 cut(s) 71, 74, 805
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BbsI GAAGAC 3 cut(s) 276, 620, 854
BbvI GCAGC 3 cut(s) 58, 86, 817
BccI CCATC 2 cut(s) 414, 792
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BciT130I CCWGG 1 cut(s) 377
BclI TGATCA 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 22, 712
BfaI CTAG 2 cut(s) 770, 892
BfmI CTRYAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 49
BisI GCNGC 4 cut(s) 72, 75, 777, 806
BlsI GCNGC 4 cut(s) 73, 76, 778, 807
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 377
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 377
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 2 cut(s) 15, 763
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 3 cut(s) 276, 620, 854
BpuEI CTTGAG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 3 cut(s) 66, 376, 856
BsaWI WCCGGW 2 cut(s) 176, 865
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 169, 593, 626
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 377
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 66, 376, 856
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 33, 267
BseNI ACTGG 3 cut(s) 169, 593, 626
BseXI GCAGC 3 cut(s) 58, 86, 817
BsgI GTGCAG 1 cut(s) 824
BshFI GGCC 3 cut(s) 65, 665, 783
BshVI ATCGAT 1 cut(s) 312
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 3 cut(s) 78, 177, 866
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 2 cut(s) 22, 712
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 3 cut(s) 65, 665, 783
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 565
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 5 cut(s) 179, 219, 418, 739, 881
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 702, 777
BspANI GGCC 3 cut(s) 65, 665, 783
BspCNI CTCAG 2 cut(s) 32, 266
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 176
BspHI TCATGA 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 3 cut(s) 187, 227, 413
BspTI CTTAAG 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 3 cut(s) 169, 593, 626
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 66, 376, 856
BssMI GATC 5 cut(s) 179, 219, 418, 739, 881
BssT1I CCWWGG 2 cut(s) 66, 856
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 3 cut(s) 16, 265, 833
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 49
BstC8I GCNNGC 5 cut(s) 247, 259, 673, 682, 781
BstDEI CTNAG 3 cut(s) 19, 126, 253
BstDSI CCRYGG 1 cut(s) 66
BstKTI GATC 5 cut(s) 182, 222, 421, 742, 884
BstMAI GTCTC 2 cut(s) 22, 712
BstMBI GATC 5 cut(s) 179, 219, 418, 739, 881
BstMWI GCNNNNNNNGC 3 cut(s) 71, 677, 681
BstNI CCWGG 1 cut(s) 377
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 58, 86, 817
BstV2I GAAGAC 3 cut(s) 276, 620, 854
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 3 cut(s) 65, 665, 783
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 66
BtsI GCAGTG 2 cut(s) 267, 639
BtsIMutI CAGTG 4 cut(s) 27, 261, 267, 639
Cac8I GCNNGC 5 cut(s) 247, 259, 673, 682, 781
CciI TCATGA 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 293
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 664
Csp6I GTAC 4 cut(s) 205, 649, 750, 834
CviAII CATG 7 cut(s) 61, 67, 226, 302, 699, 753, 817
CviQI GTAC 4 cut(s) 205, 649, 750, 834
DdeI CTNAG 3 cut(s) 19, 126, 253
DpnI GATC 5 cut(s) 181, 221, 420, 741, 883
DpnII GATC 5 cut(s) 179, 219, 418, 739, 881
DraIII CACNNNGTG 1 cut(s) 602
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco130I CCWWGG 2 cut(s) 66, 856
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 66, 856
ErhI CCWWGG 2 cut(s) 66, 856
FaeI CATG 7 cut(s) 64, 70, 229, 305, 702, 756, 820
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 7 cut(s) 60, 66, 225, 301, 698, 752, 816
FbaI TGATCA 1 cut(s) 739
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 4 cut(s) 72, 75, 777, 806
Fsp4HI GCNGC 4 cut(s) 72, 75, 777, 806
FspBI CTAG 2 cut(s) 770, 892
GluI GCNGC 4 cut(s) 72, 75, 777, 806
HaeIII GGCC 3 cut(s) 65, 665, 783
HapII CCGG 3 cut(s) 78, 177, 866
HgaI GACGC 1 cut(s) 664
Hin1II CATG 7 cut(s) 64, 70, 229, 305, 702, 756, 820
HinfI GANTC 3 cut(s) 518, 625, 888
HpaII CCGG 3 cut(s) 78, 177, 866
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 344, 823
Hpy188III TCNNGA 6 cut(s) 92, 177, 302, 454, 770, 885
Hpy8I GTNNAC 2 cut(s) 344, 823
Hpy99I CGWCG 1 cut(s) 680
HpyAV CCTTC 4 cut(s) 193, 210, 376, 442
HpyCH4III ACNGT 3 cut(s) 16, 265, 833
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 74, 229, 272, 805
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 677, 681
HpyF3I CTNAG 3 cut(s) 19, 126, 253
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 7 cut(s) 64, 70, 229, 305, 702, 756, 820
Kpn2I TCCGGA 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 5 cut(s) 179, 219, 418, 739, 881
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 3 cut(s) 58, 86, 817
LweI GCATC 2 cut(s) 15, 763
MaeI CTAG 2 cut(s) 770, 892
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 265
MalI GATC 5 cut(s) 181, 221, 420, 741, 883
MboI GATC 5 cut(s) 179, 219, 418, 739, 881
MboII GAAGA 4 cut(s) 276, 327, 625, 854
MflI RGATCY 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 4 cut(s) 82, 401, 495, 727
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 2 cut(s) 527, 619
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 19, 44, 134, 173, 549, 655
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 50, 734
MslI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 49
MspI CCGG 3 cut(s) 78, 177, 866
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 3 cut(s) 71, 677, 681
NcoI CCATGG 1 cut(s) 66
NdeII GATC 5 cut(s) 179, 219, 418, 739, 881
NlaIII CATG 7 cut(s) 64, 70, 229, 305, 702, 756, 820
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 301
PctI GAATGC 1 cut(s) 583
PfeI GAWTC 1 cut(s) 888
PkrI GCNGC 4 cut(s) 73, 76, 778, 807
PleI GAGTC 2 cut(s) 526, 619
PpsI GAGTC 2 cut(s) 526, 619
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 206, 650, 751, 835
RsaNI GTAC 4 cut(s) 205, 649, 750, 834
RseI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
SaqAI TTAA 2 cut(s) 50, 734
SatI GCNGC 4 cut(s) 72, 75, 777, 806
Sau3AI GATC 5 cut(s) 179, 219, 418, 739, 881
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 527, 619
ScrFI CCNGG 1 cut(s) 377
SetI ASST 8 cut(s) 124, 165, 259, 295, 604, 769, 843, 862
SfaNI GCATC 2 cut(s) 15, 763
SfcI CTRYAG 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 4 cut(s) 65, 363, 365, 697
SmlI CTYRAG 3 cut(s) 49, 288, 565
SmoI CTYRAG 3 cut(s) 49, 288, 565
Sse9I AATT 4 cut(s) 82, 401, 495, 727
SsiI CCGC 2 cut(s) 702, 777
SspI AATATT 1 cut(s) 490
SspMI CTAG 2 cut(s) 770, 892
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 2 cut(s) 66, 856
TaaI ACNGT 3 cut(s) 16, 265, 833
TaiI ACGT 1 cut(s) 124
TaqI TCGA 5 cut(s) 159, 165, 222, 312, 566
TasI AATT 4 cut(s) 82, 401, 495, 727
TatI WGTACW 2 cut(s) 204, 833
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 888
Tru1I TTAA 2 cut(s) 50, 734
Tru9I TTAA 2 cut(s) 50, 734
TscAI CASTG 4 cut(s) 27, 268, 274, 646
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 71, 74, 805
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 49, 321, 805
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 4 cut(s) 27, 268, 274, 646
Vha464I CTTAAG 1 cut(s) 49
VpaK11BI GGWCC 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 822
XspI CTAG 2 cut(s) 770, 892
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.