Prupe.3G171700_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19023526 .. 19024892
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G171700.1

Sequence Viewer

Length: 849 bp
ATGACTTCTTCCAAGGTCACTGTGATGCTTTTTCTTTCTTTTTTTGTAACTTCTATGATGGCTGCCTCAGCTGGTAATTTCTATCAGGACTTTGATGTAACATTCGGCGATGAACGCGCTAAGATACTCAACGGAGGACAGCTTCTCACACTTAACCTTGACAAGTTTTCTGGGTCTGGTTTCAAATCCAAGAATGAGTACTTACTTGGAAGAATTGACATGCAGATCAAGCTGGTCTCTGGCAACTCAGCTGGCACTGTCACTGCATACTATTTATCTTCTGAGGGTCCAACTCATGATGAGATTGACTTCGAGTTTTTGGGAAACTTATCTGGAGACCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAAAGGCCTTCCACACCTATTCAATTGTCTGGAACAGCCAGAGGATTATATTCTTAGTGGACAACATTCCAATCAGAGTGTTCACCAACTTGGAAACAATTGGAGTTCCATTTCCCAAAAACCAACCCATGAGGATTTACTCAAGCCTCTGGAATGCTGATGACTGGGCAACAAGAGGTGGCCTTGTGAAGACTGACTGGACACAAGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGTCTCCACTACTACATCTACATCTACTAACTCCTTAACAGAGCAGAGTGCATGGCAGACTCAAGGGCTTGATGCGGCAGGCCGAAACCGGCTTCGATGGGTGCAACAAAAGTTCATGATCTACAACTACTGTTCTGACCTCAAACGCTTCCCACAAGGCCTCCCAGTTGAATGCAGACGATCGAGGTTCTAG

Protein Analysis

283

Amino Acids

32.08

Weight (kDa)

8.98

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 731
AclWI GGATC 1 cut(s) 407
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 4 cut(s) 184, 441, 655, 827
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 5 cut(s) 71, 142, 232, 251, 626
AluI AGCT 5 cut(s) 71, 142, 232, 251, 626
Alw26I GTCTC 3 cut(s) 241, 330, 664
AlwI GGATC 1 cut(s) 407
AoxI GGCC 4 cut(s) 423, 598, 736, 814
ApeKI GCWGC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 614
BbvCI CCTCAGC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 52, 408, 747
BcoDI GTCTC 3 cut(s) 241, 330, 664
BfaI CTAG 1 cut(s) 847
BisI GCNGC 2 cut(s) 63, 732
BlsI GCNGC 2 cut(s) 64, 733
BmcAI AGTACT 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 288
BmrI ACTGGG 2 cut(s) 592, 815
BmsI GCATC 2 cut(s) 15, 718
BmuI ACTGGG 2 cut(s) 592, 815
BpiI GAAGAC 1 cut(s) 614
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 544, 702
BsaI GGTCTC 3 cut(s) 241, 330, 664
BsaJI CCNNGG 2 cut(s) 12, 370
BsaXI ACNNNNNCTCC 4 cut(s) 610, 640, 801, 831
Bse118I RCCGGY 1 cut(s) 744
Bse1I ACTGG 3 cut(s) 587, 620, 821
BseDI CCNNGG 2 cut(s) 12, 370
BseMII CTCAG 3 cut(s) 81, 261, 273
BseNI ACTGG 3 cut(s) 587, 620, 821
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 839
BshFI GGCC 4 cut(s) 425, 600, 738, 816
BsiEI CGRYCG 1 cut(s) 839
BsiSI CCGG 1 cut(s) 745
BsmAI GTCTC 3 cut(s) 241, 330, 664
BsmI GAATGC 2 cut(s) 577, 833
BsnI GGCC 4 cut(s) 425, 600, 738, 816
Bso31I GGTCTC 3 cut(s) 241, 330, 664
Bsp143I GATC 4 cut(s) 225, 412, 774, 836
BspACI CCGC 1 cut(s) 731
BspANI GGCC 4 cut(s) 425, 600, 738, 816
BspCNI CTCAG 3 cut(s) 80, 260, 274
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 2 cut(s) 295, 771
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 1 cut(s) 407
BspTNI GGTCTC 3 cut(s) 241, 330, 664
BsrFI RCCGGY 1 cut(s) 744
BsrI ACTGG 3 cut(s) 587, 620, 821
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 2 cut(s) 12, 370
BssMI GATC 4 cut(s) 225, 412, 774, 836
BssT1I CCWWGG 2 cut(s) 12, 370
Bst4CI ACNGT 3 cut(s) 22, 259, 788
BstC8I GCNNGC 2 cut(s) 253, 736
BstDEI CTNAG 5 cut(s) 67, 120, 247, 282, 472
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 4 cut(s) 228, 415, 777, 839
BstMAI GTCTC 3 cut(s) 241, 330, 664
BstMBI GATC 4 cut(s) 225, 412, 774, 836
BstMCI CGRYCG 1 cut(s) 839
BstMWI GCNNNNNNNGC 3 cut(s) 68, 114, 229
BstNSI RCATGY 1 cut(s) 223
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 614
BsuRI GGCC 4 cut(s) 425, 600, 738, 816
BtgZI GCGATG 1 cut(s) 123
BtsI GCAGTG 2 cut(s) 261, 633
BtsIMutI CAGTG 4 cut(s) 18, 255, 261, 633
Cac8I GCNNGC 2 cut(s) 253, 736
CciI TCATGA 2 cut(s) 295, 771
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 744
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 199
CviAII CATG 5 cut(s) 220, 296, 547, 708, 772
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 5 cut(s) 67, 120, 247, 282, 472
DpnI GATC 4 cut(s) 227, 414, 776, 838
DpnII GATC 4 cut(s) 225, 412, 774, 836
Eco130I CCWWGG 2 cut(s) 12, 370
Eco147I AGGCCT 2 cut(s) 425, 816
Eco31I GGTCTC 3 cut(s) 241, 330, 664
Eco47I GGWCC 1 cut(s) 287
EcoT14I CCWWGG 2 cut(s) 12, 370
ErhI CCWWGG 2 cut(s) 12, 370
FaeI CATG 5 cut(s) 223, 299, 550, 711, 775
FaiI YATR 9 cut(s) 56, 221, 268, 297, 354, 467, 548, 709, 773
FatI CATG 5 cut(s) 219, 295, 546, 707, 771
Fnu4HI GCNGC 2 cut(s) 63, 732
Fsp4HI GCNGC 2 cut(s) 63, 732
FspBI CTAG 1 cut(s) 847
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 63, 732
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 4 cut(s) 425, 600, 738, 816
HapII CCGG 1 cut(s) 745
HhaI GCGC 1 cut(s) 119
Hin1II CATG 5 cut(s) 223, 299, 550, 711, 775
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HinfI GANTC 1 cut(s) 715
HpaII CCGG 1 cut(s) 745
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 2 cut(s) 478, 501
Hpy188I TCNGA 3 cut(s) 283, 494, 793
Hpy188III TCNNGA 6 cut(s) 86, 296, 333, 448, 568, 772
Hpy8I GTNNAC 2 cut(s) 478, 501
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 3 cut(s) 22, 259, 788
HpyCH4V TGCA 5 cut(s) 223, 266, 707, 760, 831
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 114, 229
HpyF3I CTNAG 5 cut(s) 67, 120, 247, 282, 472
Hsp92II CATG 5 cut(s) 223, 299, 550, 711, 775
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 4 cut(s) 225, 412, 774, 836
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 15, 718
MaeI CTAG 1 cut(s) 847
MaeIII GTNAC 4 cut(s) 16, 46, 97, 259
MalI GATC 4 cut(s) 227, 414, 776, 838
MboI GATC 4 cut(s) 225, 412, 774, 836
MboII GAAGA 3 cut(s) 222, 270, 619
MfeI CAATTG 2 cut(s) 441, 516
MluCI AATT 5 cut(s) 76, 213, 395, 441, 516
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 314
MseI TTAA 2 cut(s) 153, 692
MslI CAYNNNNRTG 2 cut(s) 23, 357
MspA1I CMGCKG 2 cut(s) 71, 251
MspI CCGG 1 cut(s) 745
MunI CAATTG 2 cut(s) 441, 516
Mva1269I GAATGC 2 cut(s) 577, 833
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 68, 114, 229
NdeII GATC 4 cut(s) 225, 412, 774, 836
NlaIII CATG 5 cut(s) 223, 299, 550, 711, 775
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 16, 259
NspI RCATGY 1 cut(s) 223
PagI TCATGA 2 cut(s) 295, 771
PceI AGGCCT 2 cut(s) 425, 816
PctI GAATGC 2 cut(s) 577, 833
PkrI GCNGC 2 cut(s) 64, 733
Ple19I CGATCG 1 cut(s) 839
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 1 cut(s) 287
PvuI CGATCG 1 cut(s) 839
PvuII CAGCTG 2 cut(s) 71, 251
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 2 cut(s) 23, 357
SaqAI TTAA 2 cut(s) 153, 692
SatI GCNGC 2 cut(s) 63, 732
Sau3AI GATC 4 cut(s) 225, 412, 774, 836
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 709
SfaNI GCATC 2 cut(s) 15, 718
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 23, 357
SmlI CTYRAG 2 cut(s) 559, 717
SmoI CTYRAG 2 cut(s) 559, 717
Sse9I AATT 5 cut(s) 76, 213, 395, 441, 516
SseBI AGGCCT 2 cut(s) 425, 816
SsiI CCGC 1 cut(s) 731
SspMI CTAG 1 cut(s) 847
StuI AGGCCT 2 cut(s) 425, 816
StyI CCWWGG 2 cut(s) 12, 370
TaaI ACNGT 3 cut(s) 22, 259, 788
TaqI TCGA 3 cut(s) 312, 751, 839
TasI AATT 5 cut(s) 76, 213, 395, 441, 516
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 734
Tru1I TTAA 2 cut(s) 153, 692
Tru9I TTAA 2 cut(s) 153, 692
TscAI CASTG 4 cut(s) 25, 262, 268, 640
TseFI GTSAC 2 cut(s) 16, 259
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 16, 259
TspDTI ATGAA 2 cut(s) 126, 760
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 4 cut(s) 25, 262, 268, 640
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 847
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.