Rh2DG510200

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
73432239 .. 73434753
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG510200.1

Sequence Viewer

Length: 909 bp
ATGTCTTCTTGTAATATCATCCTTTCTCTCTCCTTGTTCATAACTTGTGTCATGGTCATTATGGCCTCTGCTAGTAATTTCTATCAGGACTTTCACATTTTATTCGGTGACCAACGTGCTCAAATACTTGATGGAGGACAACTTCTCACCCTCTCCCAGGACCAGACTTCCGGGTCCGGCTTCATTTCTCAGAACCAATACCTATTTGGACGGTTCGACATGCAAATGAAGCTGGCGCCCGGGAACACTGCTGGTACCGTCACCACATTTTATTTATCATCTTCAGGGTACCATCATGATGAGATTGACTTGGAGTTTCTTGGAAACACATCCGGGAATCCCTACACTCTCAGTACTAATATCTACACGCAGGGAATAGGGGGTAGAGAACAACAATTCCATCTTTGGTTTGATCCCTCCAAAGACTTCCACACTTACTCCGTTGTTTGGAATGTTCATCGCATTATAATCTTTGTGGATAACAGTCCCATTAGGGTTTTCAACAACTTGGAACTACTTCATGTTCCGTTTCCTAAAAGCCAACCCATGGCGATTTACGCCAGTTTCTGGGATGGTGATAGCTGGGCTACACAAGGTGGCCGTGTGAAGACTGACTGGTCTCAAGCTCCTTTCACCGCCTCTTATGGAAGATACAACATCAATGCTTGTCTAGGATCACAGCAGCAAGGTTCATCATCATCATCATATCCATACTCATACACAGACTGTGTTTCCACATCTACCAATTCGTCAAATGTCGACAACTCATGGAGGAATCTAGGGCTTAATGCTGCAGGTCGAAACAGGCTTCGATGGGTTCAAACGAAGTTCATGATCTACAACTACTGCACTGACCGTAATAAGTTTCCCGGTGGTCTGCCACGGGAATGCCAGCATTCCAAGTTCTAG

Protein Analysis

302

Amino Acids

34.05

Weight (kDa)

6.69

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 28 - 207 7.6e-60 Glycosyl hydrolases family 16
XET_C PF06955 255 - 297 1.2e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AasI GACNNNNNNGTC 2 cut(s) 172, 616
Acc36I ACCTGC 1 cut(s) 785
Acc65I GGTACC 2 cut(s) 254, 288
AccB1I GGYRCC 3 cut(s) 235, 254, 288
AccB7I CCANNNNNTGG 2 cut(s) 547, 567
AccI GTMKAC 1 cut(s) 759
AciI CCGC 1 cut(s) 636
AclWI GGATC 2 cut(s) 407, 682
AcoI YGGCCR 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 267
AcyI GRCGYC 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 256, 290, 355
AfiI CCNNNNNNNGG 4 cut(s) 157, 447, 547, 567
AgsI TTSAA 2 cut(s) 502, 821
AjnI CCWGG 1 cut(s) 156
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 3 cut(s) 232, 582, 626
AluI AGCT 3 cut(s) 232, 582, 626
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 2 cut(s) 407, 682
AlwNI CAGNNNCTG 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 63, 598
ApeKI GCWGC 2 cut(s) 682, 791
Asp700I GAANNNNTTC 1 cut(s) 516
Asp718I GGTACC 2 cut(s) 254, 288
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 160, 174
AsuC2I CCSGG 5 cut(s) 172, 240, 241, 334, 870
AsuHPI GGTGA 5 cut(s) 119, 139, 253, 587, 625
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 160, 174
BanI GGYRCC 3 cut(s) 235, 254, 288
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 694, 778
BccI CCATC 5 cut(s) 125, 300, 408, 566, 807
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 1 cut(s) 158
BcnI CCSGG 5 cut(s) 172, 240, 241, 334, 870
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 4 cut(s) 72, 671, 779, 907
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 1 cut(s) 239
BfuAI ACCTGC 1 cut(s) 785
BisI GCNGC 2 cut(s) 683, 792
BlsI GCNGC 2 cut(s) 684, 793
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 6 cut(s) 158, 172, 240, 241, 334, 870
Bme18I GGWCC 2 cut(s) 160, 174
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 160, 174
BmiI GGNNCC 4 cut(s) 175, 237, 256, 290
BmrFI CCNGG 6 cut(s) 158, 172, 240, 241, 334, 870
BpiI GAAGAC 1 cut(s) 614
BpuEI CTTGAG 1 cut(s) 606
BpuMI CCSGG 5 cut(s) 172, 240, 241, 334, 870
BsaHI GRCGYC 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 4 cut(s) 156, 239, 546, 881
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 447, 547, 567
Bse1I ACTGG 2 cut(s) 561, 620
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 4 cut(s) 156, 239, 546, 881
BseGI GGATG 3 cut(s) 18, 329, 577
BseLI CCNNNNNNNGG 4 cut(s) 157, 447, 547, 567
BseMII CTCAG 2 cut(s) 203, 364
BseNI ACTGG 2 cut(s) 561, 620
BseXI GCAGC 2 cut(s) 694, 778
BseYI CCCAGC 1 cut(s) 582
BsgI GTGCAG 1 cut(s) 832
BshFI GGCC 2 cut(s) 65, 600
BshNI GGYRCC 3 cut(s) 235, 254, 288
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 5 cut(s) 171, 177, 240, 333, 870
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 4 cut(s) 157, 447, 547, 567
BsmAI GTCTC 1 cut(s) 624
BsmFI GGGAC 1 cut(s) 471
BsmI GAATGC 2 cut(s) 893, 895
BsnI GGCC 2 cut(s) 65, 600
Bso31I GGTCTC 1 cut(s) 624
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 3 cut(s) 412, 674, 834
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 1 cut(s) 636
BspANI GGCC 2 cut(s) 65, 600
BspCNI CTCAG 2 cut(s) 202, 363
BspHI TCATGA 2 cut(s) 295, 831
BspLI GGNNCC 4 cut(s) 175, 237, 256, 290
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 785
BspPI GGATC 2 cut(s) 407, 682
BspT107I GGYRCC 3 cut(s) 235, 254, 288
BspTNI GGTCTC 1 cut(s) 624
BsrI ACTGG 2 cut(s) 561, 620
BssECI CCNNGG 4 cut(s) 156, 239, 546, 881
BssMI GATC 3 cut(s) 412, 674, 834
BssNI GRCGYC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 5 cut(s) 213, 259, 485, 728, 857
BstACI GRCGYC 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 234, 893
BstDEI CTNAG 2 cut(s) 189, 350
BstDSI CCRYGG 2 cut(s) 546, 881
BstEII GGTNACC 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 18, 329, 577
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 415, 677, 837
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 3 cut(s) 412, 674, 834
BstMWI GCNNNNNNNGC 2 cut(s) 229, 557
BstNI CCWGG 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 223
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 6 cut(s) 156, 170, 238, 239, 332, 868
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 2 cut(s) 694, 778
BstV2I GAAGAC 1 cut(s) 614
BsuRI GGCC 2 cut(s) 65, 600
BtgI CCRYGG 2 cut(s) 546, 881
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 3 cut(s) 18, 329, 577
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 849
BveI ACCTGC 1 cut(s) 785
Cac8I GCNNGC 2 cut(s) 234, 893
CaiI CAGNNNCTG 1 cut(s) 567
CciI TCATGA 2 cut(s) 295, 831
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 160, 174
Cfr9I CCCGGG 1 cut(s) 239
Csp6I GTAC 3 cut(s) 255, 289, 354
CviAII CATG 7 cut(s) 52, 220, 296, 521, 547, 768, 832
CviQI GTAC 3 cut(s) 255, 289, 354
DdeI CTNAG 2 cut(s) 189, 350
DinI GGCGCC 1 cut(s) 237
DpnI GATC 3 cut(s) 414, 676, 836
DpnII GATC 3 cut(s) 412, 674, 834
DraIII CACNNNGTG 1 cut(s) 596
DrdI GACNNNNNNGTC 2 cut(s) 172, 616
DseDI GACNNNNNNGTC 2 cut(s) 172, 616
EaeI YGGCCR 1 cut(s) 598
Eco130I CCWWGG 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 624
Eco47I GGWCC 2 cut(s) 160, 174
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 546
EgeI GGCGCC 1 cut(s) 237
EheI GGCGCC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 7 cut(s) 55, 223, 299, 524, 550, 771, 835
FaqI GGGAC 1 cut(s) 471
FatI CATG 7 cut(s) 51, 219, 295, 520, 546, 767, 831
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 2 cut(s) 683, 792
FokI GGATG 3 cut(s) 5, 316, 584
Fsp4HI GCNGC 2 cut(s) 683, 792
FspBI CTAG 4 cut(s) 72, 671, 779, 907
GlaI GCGC 1 cut(s) 237
GluI GCNGC 2 cut(s) 683, 792
GsaI CCCAGC 1 cut(s) 586
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 2 cut(s) 65, 600
HapII CCGG 5 cut(s) 171, 177, 240, 333, 870
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 236
Hin1II CATG 7 cut(s) 55, 223, 299, 524, 550, 771, 835
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 2 cut(s) 337, 775
HpaII CCGG 5 cut(s) 171, 177, 240, 333, 870
HphI GGTGA 5 cut(s) 119, 139, 253, 587, 625
Hpy166II GTNNAC 1 cut(s) 760
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 3 cut(s) 86, 296, 832
Hpy8I GTNNAC 1 cut(s) 760
HpyCH4III ACNGT 5 cut(s) 213, 259, 485, 728, 857
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 223, 794, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 557
HpyF3I CTNAG 2 cut(s) 189, 350
HpySE526I ACGT 1 cut(s) 115
Hsp92I GRCGYC 1 cut(s) 236
Hsp92II CATG 7 cut(s) 55, 223, 299, 524, 550, 771, 835
HspAI GCGC 1 cut(s) 236
KasI GGCGCC 1 cut(s) 235
KpnI GGTACC 2 cut(s) 258, 292
Kzo9I GATC 3 cut(s) 412, 674, 834
LmnI GCTCC 1 cut(s) 631
Lsp1109I GCAGC 2 cut(s) 694, 778
MaeI CTAG 4 cut(s) 72, 671, 779, 907
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 2 cut(s) 107, 259
MalI GATC 3 cut(s) 414, 676, 836
MboI GATC 3 cut(s) 412, 674, 834
MboII GAAGA 3 cut(s) 273, 619, 660
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 76, 395, 745
Mly113I GGCGCC 1 cut(s) 236
MnlI CCTC 6 cut(s) 76, 128, 161, 427, 649, 765
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 1 cut(s) 786
MslI CAYNNNNRTG 3 cut(s) 224, 297, 886
MspI CCGG 5 cut(s) 171, 177, 240, 333, 870
MspR9I CCNGG 6 cut(s) 158, 172, 240, 241, 334, 870
Mva1269I GAATGC 2 cut(s) 893, 895
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 229, 557
NarI GGCGCC 1 cut(s) 236
NciI CCSGG 5 cut(s) 172, 240, 241, 334, 870
NcoI CCATGG 1 cut(s) 546
NdeII GATC 3 cut(s) 412, 674, 834
NlaIII CATG 7 cut(s) 55, 223, 299, 524, 550, 771, 835
NlaIV GGNNCC 4 cut(s) 175, 237, 256, 290
NmuCI GTSAC 2 cut(s) 107, 259
NspI RCATGY 1 cut(s) 223
PagI TCATGA 2 cut(s) 295, 831
PctI GAATGC 2 cut(s) 893, 895
PdmI GAANNNNTTC 1 cut(s) 516
PfeI GAWTC 2 cut(s) 337, 775
PflMI CCANNNNNTGG 2 cut(s) 547, 567
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 2 cut(s) 684, 793
PluTI GGCGCC 1 cut(s) 239
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 156
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 582
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 4 cut(s) 175, 237, 256, 290
PspPI GGNCC 2 cut(s) 160, 174
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 3 cut(s) 256, 290, 355
RsaNI GTAC 3 cut(s) 255, 289, 354
RseI CAYNNNNRTG 3 cut(s) 224, 297, 886
SalI GTCGAC 1 cut(s) 758
SaqAI TTAA 1 cut(s) 786
SatI GCNGC 2 cut(s) 683, 792
Sau3AI GATC 3 cut(s) 412, 674, 834
Sau96I GGNCC 2 cut(s) 160, 174
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 6 cut(s) 158, 172, 240, 241, 334, 870
SduI GDGCHC 1 cut(s) 121
SetI ASST 8 cut(s) 118, 204, 234, 584, 598, 628, 691, 799
SfcI CTRYAG 1 cut(s) 792
SfoI GGCGCC 1 cut(s) 237
SinI GGWCC 2 cut(s) 160, 174
SmaI CCCGGG 1 cut(s) 241
SmiMI CAYNNNNRTG 3 cut(s) 224, 297, 886
SmlI CTYRAG 1 cut(s) 621
SmoI CTYRAG 1 cut(s) 621
Sse9I AATT 3 cut(s) 76, 395, 745
SsiI CCGC 1 cut(s) 636
SspDI GGCGCC 1 cut(s) 235
SspMI CTAG 4 cut(s) 72, 671, 779, 907
StyD4I CCNGG 6 cut(s) 156, 170, 238, 239, 332, 868
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 5 cut(s) 213, 259, 485, 728, 857
TaiI ACGT 1 cut(s) 118
TaqI TCGA 4 cut(s) 216, 759, 799, 811
TasI AATT 3 cut(s) 76, 395, 745
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 2 cut(s) 337, 775
Tru1I TTAA 1 cut(s) 786
Tru9I TTAA 1 cut(s) 786
TscAI CASTG 2 cut(s) 253, 856
TseFI GTSAC 2 cut(s) 107, 259
TseI GCWGC 2 cut(s) 682, 791
Tsp45I GTSAC 2 cut(s) 107, 259
TspDTI ATGAA 7 cut(s) 28, 172, 242, 446, 509, 681, 820
TspGWI ACGGA 2 cut(s) 430, 516
TspMI CCCGGG 1 cut(s) 239
TspRI CASTG 2 cut(s) 253, 856
Van91I CCANNNNNTGG 2 cut(s) 547, 567
VpaK11BI GGWCC 2 cut(s) 160, 174
XagI CCTNNNNNAGG 1 cut(s) 155
XceI RCATGY 1 cut(s) 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmaI CCCGGG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 4 cut(s) 72, 671, 779, 907
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.