Prupe.4G072800_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000406
Physical Location & Seq
Forward (+)
3561436 .. 3563166
1731 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G072800.1

Sequence Viewer

Length: 849 bp
ATGGCTCCAAACTTGATCTTGATCTCTCTCTTTCTCTGTTCTTTTATGGCCGCCTCTTCAGCTGGCAACTTCTACCAAGATTTTGACCTAATATGGGGTGACCATCGTGCAAAAATACTCAGTGGAGGTAGCCTTCTGACGCTTTCACTGGACCAGGCCTCTGGTTCTGGCTTCCAATCCAAGAGACAATACCTCTTTGGCAGAATCGACATGCAGCTCAAGCTTGTTGCTGGAAACTCTGCAGGAACCGTCACCGCTTACTATTTGTCTTCAGAAGGGCCAAACCGCGATGAGATTGATTTTGAGTTCTTGGGGAACTTGAGTGGAGACCCTTATATTGTGCACACCAATGTGTACACTCAAGGGAAAGCGGACAGAGAGCAACAATTCTACCTCTGGTTCGACCCAACAAAAGATTTTCACACCTACTCTTTTCTTTGGAACCCTCAGCGTATAATATTCTTAGTGGACAATATCCCCATAAGAGTGTTCGACAATGGAGAATCGTATGGGGTTCCATTTCCCAAGAGACAACCCATGAAGCTATACTCAAGCCTGTGGAACGCAGACCAATGGGCTACAAAAGGTGGCCTAGTGAAAACAGACTGGTCCAAAGCTCCTTTCACAGCCTTCTACAGAAACTTCAAAGCTAATGCTTGTGTTTGGTCAAAGGGTTCATCTTCATGTGCAAATAATAAAAATAATGCTTGGCAGACTCAAGGGCTGGATGCAAATAGTCGTAGAAGACTGAGGTGGGTTCAAAAGTACTTCATGATTTACAACTATTGCTCTGATCTGAAGCGATTTCCTCAGGGTCGTCCAAGGGAGTGCAGGCGTTCTAGGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

283

Amino Acids

32.46

Weight (kDa)

9.44

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 4 cut(s) 51, 255, 286, 371
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 3 cut(s) 42, 255, 818
AfaI GTAC 2 cut(s) 356, 767
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 646, 761
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 350
AluBI AGCT 6 cut(s) 62, 217, 223, 544, 617, 650
AluI AGCT 6 cut(s) 62, 217, 223, 544, 617, 650
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 178, 321, 523
Alw44I GTGCAC 1 cut(s) 341
AoxI GGCC 4 cut(s) 48, 156, 278, 589
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 151, 278, 609
AsuHPI GGTGA 2 cut(s) 110, 244
AvaII GGWCC 2 cut(s) 151, 609
AxyI CCTNAGG 1 cut(s) 810
BaeGI GKGCMC 1 cut(s) 345
BbsI GAAGAC 2 cut(s) 261, 751
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 178, 321, 523
BfaI CTAG 2 cut(s) 593, 840
BfmI CTRYAG 2 cut(s) 240, 634
BisI GCNGC 2 cut(s) 51, 215
BlsI GCNGC 2 cut(s) 52, 216
BmcAI AGTACT 1 cut(s) 767
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 151, 609
BmgT120I GGNCC 3 cut(s) 151, 278, 609
BmiI GGNNCC 4 cut(s) 6, 247, 443, 516
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 261, 751
Bpu10I CCTNAGC 1 cut(s) 447
BpuEI CTTGAG 5 cut(s) 203, 340, 345, 535, 702
BsaBI GATNNNNATC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 821
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 153, 611
Bse21I CCTNAGG 1 cut(s) 810
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 4 cut(s) 133, 461, 740, 824
BseNI ACTGG 2 cut(s) 153, 611
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 4 cut(s) 50, 158, 280, 591
BsiHKAI GWGCWC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 3 cut(s) 178, 321, 523
BsnI GGCC 4 cut(s) 50, 158, 280, 591
Bso31I GGTCTC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 15, 21, 793
BspACI CCGC 4 cut(s) 51, 255, 286, 371
BspANI GGCC 4 cut(s) 50, 158, 280, 591
BspCNI CTCAG 4 cut(s) 132, 460, 741, 823
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 4 cut(s) 6, 247, 443, 516
BspMAI CTGCAG 1 cut(s) 244
BspTNI GGTCTC 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 2 cut(s) 153, 611
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 3 cut(s) 15, 21, 793
BssT1I CCWWGG 1 cut(s) 821
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 61
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 64, 833
BstDEI CTNAG 5 cut(s) 119, 447, 463, 749, 810
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 3 cut(s) 18, 24, 796
BstMAI GTCTC 3 cut(s) 178, 321, 523
BstMBI GATC 3 cut(s) 15, 21, 793
BstMWI GCNNNNNNNGC 2 cut(s) 59, 220
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 214
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 240, 634
BstSLI GKGCMC 1 cut(s) 345
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 2 cut(s) 261, 751
BstXI CCANNNNNNTGG 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 4 cut(s) 50, 158, 280, 591
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 2 cut(s) 127, 146
Cac8I GCNNGC 2 cut(s) 64, 833
CciI TCATGA 1 cut(s) 771
Cfr13I GGNCC 3 cut(s) 151, 278, 609
CseI GACGC 1 cut(s) 148
Csp6I GTAC 2 cut(s) 355, 766
CviAII CATG 4 cut(s) 211, 538, 684, 772
CviQI GTAC 2 cut(s) 355, 766
DdeI CTNAG 5 cut(s) 119, 447, 463, 749, 810
DpnI GATC 3 cut(s) 17, 23, 795
DpnII GATC 3 cut(s) 15, 21, 793
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 821
Eco147I AGGCCT 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 151, 609
Eco57I CTGAAG 3 cut(s) 42, 255, 818
Eco81I CCTNAGG 1 cut(s) 810
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 821
ErhI CCWWGG 1 cut(s) 821
FaeI CATG 4 cut(s) 214, 541, 687, 775
FatI CATG 4 cut(s) 210, 537, 683, 771
Fnu4HI GCNGC 2 cut(s) 51, 215
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 2 cut(s) 51, 215
FspBI CTAG 2 cut(s) 593, 840
GluI GCNGC 2 cut(s) 51, 215
HaeIII GGCC 4 cut(s) 50, 158, 280, 591
HgaI GACGC 1 cut(s) 148
Hin1II CATG 4 cut(s) 214, 541, 687, 775
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 204, 503, 715
HphI GGTGA 2 cut(s) 110, 244
Hpy166II GTNNAC 4 cut(s) 343, 355, 357, 469
Hpy188I TCNGA 4 cut(s) 138, 274, 793, 798
Hpy188III TCNNGA 2 cut(s) 19, 772
Hpy8I GTNNAC 4 cut(s) 343, 355, 357, 469
HpyAV CCTTC 3 cut(s) 143, 269, 640
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 7 cut(s) 110, 214, 242, 343, 689, 731, 831
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 220
HpyF3I CTNAG 5 cut(s) 119, 447, 463, 749, 810
Hsp92II CATG 4 cut(s) 214, 541, 687, 775
Kzo9I GATC 3 cut(s) 15, 21, 793
LmnI GCTCC 2 cut(s) 10, 622
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 718
MaeI CTAG 2 cut(s) 593, 840
MaeIII GTNAC 2 cut(s) 98, 250
MalI GATC 3 cut(s) 17, 23, 795
MboI GATC 3 cut(s) 15, 21, 793
MboII GAAGA 4 cut(s) 48, 261, 672, 756
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 709
MnlI CCTC 8 cut(s) 64, 119, 169, 203, 404, 456, 744, 819
MslI CAYNNNNRTG 4 cut(s) 348, 350, 485, 682
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 59, 220
NdeII GATC 3 cut(s) 15, 21, 793
NlaIII CATG 4 cut(s) 214, 541, 687, 775
NlaIV GGNNCC 4 cut(s) 6, 247, 443, 516
NmuCI GTSAC 2 cut(s) 98, 250
NspI RCATGY 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 350
PagI TCATGA 1 cut(s) 771
PceI AGGCCT 1 cut(s) 158
PfeI GAWTC 2 cut(s) 204, 503
PkrI GCNGC 2 cut(s) 52, 216
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
Psp6I CCWGG 1 cut(s) 153
PspEI GGTNACC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 4 cut(s) 6, 247, 443, 516
PspPI GGNCC 3 cut(s) 151, 278, 609
PstI CTGCAG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 356, 767
RsaNI GTAC 2 cut(s) 355, 766
RseI CAYNNNNRTG 4 cut(s) 348, 350, 485, 682
SatI GCNGC 2 cut(s) 51, 215
Sau3AI GATC 3 cut(s) 15, 21, 793
Sau96I GGNCC 3 cut(s) 151, 278, 609
ScaI AGTACT 1 cut(s) 767
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 2 cut(s) 240, 634
SinI GGWCC 2 cut(s) 151, 609
SmiMI CAYNNNNRTG 4 cut(s) 348, 350, 485, 682
SmlI CTYRAG 5 cut(s) 218, 319, 360, 550, 717
SmoI CTYRAG 5 cut(s) 218, 319, 360, 550, 717
Sse9I AATT 1 cut(s) 386
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 4 cut(s) 51, 255, 286, 371
SspI AATATT 1 cut(s) 459
SspMI CTAG 2 cut(s) 593, 840
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 821
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 207, 402, 492
TasI AATT 1 cut(s) 386
TatI WGTACW 2 cut(s) 354, 765
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 204, 503
TscAI CASTG 2 cut(s) 127, 153
TseFI GTSAC 2 cut(s) 98, 250
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 2 cut(s) 98, 250
TspDTI ATGAA 4 cut(s) 554, 666, 672, 760
TspRI CASTG 2 cut(s) 127, 153
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 151, 609
XceI RCATGY 1 cut(s) 214
XspI CTAG 2 cut(s) 593, 840
ZrmI AGTACT 1 cut(s) 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.