Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8167812.1

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Reverse (-)

69 .. 431

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8167812.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggcgatttacgccagtttctgggatggtgatagctgggctacacaaggtggccgtgtgaagactgactggtctcaagctcctttcaccgcctcttatggaagatacaacatcaatgcttgtctaggatcacagcagcaaggttcatcatcatcatcatatccatactcatacacagactgtgttcccacatctaccaattcgtcaaatgtcgacaactcatggaggaatctagggcttaatgctgcaggtcgaaacaggcttcgatgggttcaaacgaagttcatgatctacaactactgcactgaccgtaataagtttcccggtggtctgccacgggaatgccagcattccaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

9.18

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	52
AdeI	CACNNNGTG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	2 cut(s)	36, 80
AluI	AGCT	2 cut(s)	36, 80
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	136
AlwNI	CAGNNNCTG	1 cut(s)	21
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	136, 245
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	2 cut(s)	41, 79
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	148, 232
BccI	CCATC	2 cut(s)	20, 261
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	3 cut(s)	125, 233, 361
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	137, 246
BlsI	GCNGC	2 cut(s)	138, 247
Bme1390I	CCNGG	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse1I	ACTGG	2 cut(s)	15, 74
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	15, 74
BseXI	GCAGC	2 cut(s)	148, 232
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	78
BsmI	GAATGC	2 cut(s)	347, 349
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	128, 288
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	15, 74
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	2 cut(s)	128, 288
Bst4CI	ACNGT	2 cut(s)	182, 311
BstC8I	GCNNGC	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	131, 291
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	128, 288
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	148, 232
BstV2I	GAAGAC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	21
CciI	TCATGA	1 cut(s)	285
CviAII	CATG	2 cut(s)	222, 286
CviJI	RGCY	6 cut(s)	36, 41, 54, 80, 238, 262
CviKI_1	RGCY	6 cut(s)	36, 41, 54, 80, 238, 262
DpnI	GATC	2 cut(s)	130, 290
DpnII	GATC	2 cut(s)	128, 288
DraIII	CACNNNGTG	1 cut(s)	50
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	225, 289
FaiI	YATR	6 cut(s)	99, 160, 166, 172, 223, 287
FatI	CATG	2 cut(s)	221, 285
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	137, 246
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	137, 246
FspBI	CTAG	3 cut(s)	125, 233, 361
GluI	GCNGC	2 cut(s)	137, 246
GsaI	CCCAGC	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	225, 289
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	41, 79
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4III	ACNGT	2 cut(s)	182, 311
HpyCH4V	TGCA	2 cut(s)	248, 303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	225, 289
Kzo9I	GATC	2 cut(s)	128, 288
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	8 cut(s)	7, 22, 28, 55, 234, 244, 337, 359
Lsp1109I	GCAGC	2 cut(s)	148, 232
MaeI	CTAG	3 cut(s)	125, 233, 361
MalI	GATC	2 cut(s)	130, 290
MboI	GATC	2 cut(s)	128, 288
MboII	GAAGA	2 cut(s)	73, 114
MluCI	AATT	1 cut(s)	199
MnlI	CCTC	2 cut(s)	103, 219
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	324
Mva1269I	GAATGC	2 cut(s)	347, 349
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	2 cut(s)	128, 288
NlaIII	CATG	2 cut(s)	225, 289
PagI	TCATGA	1 cut(s)	285
PctI	GAATGC	2 cut(s)	347, 349
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	138, 247
PspFI	CCCAGC	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	137, 246
Sau3AI	GATC	2 cut(s)	128, 288
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	5 cut(s)	38, 52, 82, 145, 253
SfcI	CTRYAG	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	3 cut(s)	125, 233, 361
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	2 cut(s)	182, 311
TaqI	TCGA	3 cut(s)	213, 253, 265
TasI	AATT	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	2 cut(s)	136, 245
TspDTI	ATGAA	2 cut(s)	135, 274
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	3 cut(s)	125, 233, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.