Rorug02G0425900

xyloglucan:xyloglucosyl transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000406
Physical Location & Seq
Reverse (-)
54678503 .. 54679986
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0425900.1

Sequence Viewer

Length: 1026 bp
ATGGAGTTCACCAACCTCGGAAAATGTCTATGTTTCGCTTTGATCCTCTTGATATATGGAGCTTGGTCTTCTGAAGCCACTTCTCGCACACTCCAAGATGCATCAATGTATGGGAGATACGAGCAATGGATGGCTGGTTATGGACGTGTCTATGAAGAGATCAACGAGAAGGAGAAGCGCTTCCAAATATTTAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAAATGAAGAATTCATTGCTTTGAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGACCACTTCTTTCAAGTATGAAAACGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGTAACCCCAATCAAGGACCAAGGCCAATGTGGATGCTGTTGGGCATTTTCAGCAGTGGCAGCCATGGAAGGAATCACTCAACTTACTACAGGTCAACTTATTTCTTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAATGCCTTTGAGTTCATCAATCAAAATCATGGACTTAATACTGAGGCTAATTACCCCTATACCGGTGTTGATGGTACATGCAATGCCCAGAAGGAAGCAAGCCATGGAGCCTCGATAACTGGTCACGAAGATGTGCCTGCAAATAGTGAAAGTGCCCTTCTTAAGGCTGTAGCTAATCAACCCATTTCCGTTGCCATTGATGCTAGTGGTTCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGCGTCATTGATGATGGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGGGCCCAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAGGTCTGTGTGGTATTGCTATGGCAGCCTCTTACCCCACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

341

Amino Acids

37.19

Weight (kDa)

4.62

Isoelectric Point (pI)

18.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 97 3.5e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 123 - 340 1.1e-83 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 876
AfaI GTAC 2 cut(s) 655, 947
AfeI AGCGCT 1 cut(s) 179
AfiI CCNNNNNNNGG 3 cut(s) 415, 641, 742
AflII CTTAAG 1 cut(s) 740
AflIII ACRYGT 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 641
AgsI TTSAA 3 cut(s) 313, 349, 810
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 5 cut(s) 62, 374, 401, 523, 752
AluI AGCT 5 cut(s) 62, 374, 401, 523, 752
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 377
Aor51HI AGCGCT 1 cut(s) 179
AoxI GGCC 2 cut(s) 424, 924
ApaI GGGCCC 1 cut(s) 928
ApeKI GCWGC 3 cut(s) 461, 971, 1004
ApoI RAATTY 1 cut(s) 287
ArsI GACNNNNNNTTYG 4 cut(s) 240, 272, 569, 601
AsiGI ACCGGT 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 3 cut(s) 418, 924, 925
AsuHPI GGTGA 2 cut(s) 557, 947
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 2 cut(s) 736, 928
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 2 cut(s) 60, 555
BbvI GCAGC 3 cut(s) 473, 958, 1016
BccI CCATC 4 cut(s) 124, 568, 644, 881
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 783, 845
BfmI CTRYAG 2 cut(s) 489, 747
BfoI RGCGCY 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 740
BisI GCNGC 3 cut(s) 462, 972, 1005
BlsI GCNGC 3 cut(s) 463, 973, 1006
Bme18I GGWCC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 418, 924, 925
BmiI GGNNCC 3 cut(s) 688, 925, 926
BmsI GCATC 5 cut(s) 88, 110, 220, 425, 769
BpiI GAAGAC 2 cut(s) 60, 555
BpmI CTGGAG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 876
BsaJI CCNNGG 6 cut(s) 16, 421, 465, 553, 682, 850
BsaWI WCCGGW 1 cut(s) 641
Bsc4I CCNNNNNNNGG 3 cut(s) 415, 641, 742
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 2 cut(s) 389, 703
Bse3DI GCAATG 3 cut(s) 131, 291, 667
BseCI ATCGAT 1 cut(s) 307
BseDI CCNNGG 6 cut(s) 16, 421, 465, 553, 682, 850
BseGI GGATG 3 cut(s) 135, 218, 440
BseLI CCNNNNNNNGG 3 cut(s) 415, 641, 742
BseMI GCAATG 3 cut(s) 131, 291, 667
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 2 cut(s) 389, 703
BseSI GKGCMC 2 cut(s) 736, 928
BseXI GCAGC 3 cut(s) 473, 958, 1016
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 2 cut(s) 426, 926
BshTI ACCGGT 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 307
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 904
BslI CCNNNNNNNGG 3 cut(s) 415, 641, 742
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 904
BsmI GAATGC 1 cut(s) 960
BsnI GGCC 2 cut(s) 426, 926
Bsp120I GGGCCC 1 cut(s) 924
Bsp1286I GDGCHC 2 cut(s) 736, 928
Bsp143I GATC 2 cut(s) 42, 159
Bsp19I CCATGG 3 cut(s) 465, 682, 850
BspANI GGCC 2 cut(s) 426, 926
BspCNI CTCAG 1 cut(s) 613
BspDI ATCGAT 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 688, 925, 926
BspPI GGATC 1 cut(s) 37
BspTI CTTAAG 1 cut(s) 740
BsrDI GCAATG 3 cut(s) 131, 291, 667
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 2 cut(s) 389, 703
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 6 cut(s) 16, 421, 465, 553, 682, 850
BssMI GATC 2 cut(s) 42, 159
BssNI GRCGYC 1 cut(s) 876
BssT1I CCWWGG 5 cut(s) 421, 465, 553, 682, 850
Bst4CI ACNGT 3 cut(s) 367, 379, 533
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 876
BstAFI CTTAAG 1 cut(s) 740
BstC8I GCNNGC 4 cut(s) 235, 372, 679, 717
BstDEI CTNAG 2 cut(s) 621, 894
BstDSI CCRYGG 3 cut(s) 465, 682, 850
BstENI CCTNNNNNAGG 1 cut(s) 740
BstF5I GGATG 3 cut(s) 135, 218, 440
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 45, 162
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 42, 159
BstMWI GCNNNNNNNGC 4 cut(s) 452, 461, 779, 1004
BstNSI RCATGY 1 cut(s) 660
BstSFI CTRYAG 2 cut(s) 489, 747
BstSLI GKGCMC 2 cut(s) 736, 928
BstV1I GCAGC 3 cut(s) 473, 958, 1016
BstV2I GAAGAC 2 cut(s) 60, 555
Bsu15I ATCGAT 1 cut(s) 307
BsuRI GGCC 2 cut(s) 426, 926
BsuTUI ATCGAT 1 cut(s) 307
BtgI CCRYGG 3 cut(s) 465, 682, 850
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 135, 218, 440
BtsI GCAGTG 2 cut(s) 462, 1017
BtsIMutI CAGTG 2 cut(s) 462, 1017
Cac8I GCNNGC 4 cut(s) 235, 372, 679, 717
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 418, 924, 925
ClaI ATCGAT 1 cut(s) 307
CseI GACGC 1 cut(s) 865
Csp6I GTAC 2 cut(s) 654, 946
CspAI ACCGGT 1 cut(s) 641
CviAII CATG 7 cut(s) 320, 466, 608, 657, 683, 851, 918
CviQI GTAC 2 cut(s) 654, 946
DdeI CTNAG 2 cut(s) 621, 894
DpnI GATC 2 cut(s) 44, 161
DpnII GATC 2 cut(s) 42, 159
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 5 cut(s) 421, 465, 553, 682, 850
Eco24I GRGCYC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 418
Eco47III AGCGCT 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 5 cut(s) 421, 465, 553, 682, 850
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 5 cut(s) 421, 465, 553, 682, 850
FaeI CATG 7 cut(s) 323, 469, 611, 660, 686, 854, 921
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 1 cut(s) 904
FatI CATG 7 cut(s) 319, 465, 607, 656, 682, 850, 917
Fnu4HI GCNGC 3 cut(s) 462, 972, 1005
FokI GGATG 3 cut(s) 142, 205, 447
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 3 cut(s) 462, 972, 1005
FspBI CTAG 2 cut(s) 783, 845
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 462, 972, 1005
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 2 cut(s) 426, 926
HapII CCGG 1 cut(s) 642
HgaI GACGC 1 cut(s) 865
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 876
Hin1II CATG 7 cut(s) 323, 469, 611, 660, 686, 854, 921
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 2 cut(s) 497, 529
HindII GTYRAC 2 cut(s) 497, 529
HinfI GANTC 3 cut(s) 215, 309, 474
HpaII CCGG 1 cut(s) 642
HphI GGTGA 2 cut(s) 557, 947
Hpy166II GTNNAC 4 cut(s) 9, 382, 497, 529
Hpy188I TCNGA 4 cut(s) 20, 73, 514, 793
Hpy188III TCNNGA 2 cut(s) 49, 704
Hpy8I GTNNAC 4 cut(s) 9, 382, 497, 529
HpyAV CCTTC 6 cut(s) 163, 464, 664, 746, 935, 974
HpyCH4III ACNGT 3 cut(s) 367, 379, 533
HpyCH4IV ACGT 2 cut(s) 145, 360
HpyCH4V TGCA 8 cut(s) 101, 233, 269, 660, 719, 958, 974, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 461, 779, 1004
HpyF3I CTNAG 2 cut(s) 621, 894
HpySE526I ACGT 2 cut(s) 145, 360
Hsp92I GRCGYC 1 cut(s) 876
Hsp92II CATG 7 cut(s) 323, 469, 611, 660, 686, 854, 921
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 42, 159
LmnI GCTCC 3 cut(s) 59, 398, 686
Lsp1109I GCAGC 3 cut(s) 473, 958, 1016
LweI GCATC 5 cut(s) 88, 110, 220, 425, 769
MaeI CTAG 2 cut(s) 783, 845
MaeII ACGT 2 cut(s) 145, 360
MaeIII GTNAC 4 cut(s) 361, 403, 701, 856
MalI GATC 2 cut(s) 44, 161
MboI GATC 2 cut(s) 42, 159
MboII GAAGA 6 cut(s) 60, 167, 296, 560, 719, 950
MhlI GDGCHC 2 cut(s) 736, 928
MluCI AATT 5 cut(s) 248, 263, 287, 628, 800
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 6 cut(s) 26, 56, 556, 616, 700, 1018
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 5 cut(s) 192, 251, 615, 741, 909
MslI CAYNNNNRTG 2 cut(s) 708, 953
MspCI CTTAAG 1 cut(s) 740
MspI CCGG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 960
MwoI GCNNNNNNNGC 4 cut(s) 452, 461, 779, 1004
NcoI CCATGG 3 cut(s) 465, 682, 850
NdeII GATC 2 cut(s) 42, 159
NlaIII CATG 7 cut(s) 323, 469, 611, 660, 686, 854, 921
NlaIV GGNNCC 3 cut(s) 688, 925, 926
NmuCI GTSAC 1 cut(s) 701
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 660
PctI GAATGC 1 cut(s) 960
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 215, 309, 474
PinAI ACCGGT 1 cut(s) 641
PkrI GCNGC 3 cut(s) 463, 973, 1006
Psp1406I AACGTT 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 688, 925, 926
PspOMI GGGCCC 1 cut(s) 924
PspPI GGNCC 3 cut(s) 418, 924, 925
PstNI CAGNNNCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 655, 947
RsaNI GTAC 2 cut(s) 654, 946
RseI CAYNNNNRTG 2 cut(s) 708, 953
SaqAI TTAA 5 cut(s) 192, 251, 615, 741, 909
SatI GCNGC 3 cut(s) 462, 972, 1005
Sau3AI GATC 2 cut(s) 42, 159
Sau96I GGNCC 3 cut(s) 418, 924, 925
SduI GDGCHC 2 cut(s) 736, 928
SfaNI GCATC 5 cut(s) 88, 110, 220, 425, 769
SfcI CTRYAG 2 cut(s) 489, 747
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 2 cut(s) 708, 953
SmlI CTYRAG 1 cut(s) 740
SmoI CTYRAG 1 cut(s) 740
Sse9I AATT 5 cut(s) 248, 263, 287, 628, 800
SspI AATATT 1 cut(s) 189
SspMI CTAG 2 cut(s) 783, 845
StyI CCWWGG 5 cut(s) 421, 465, 553, 682, 850
TaaI ACNGT 3 cut(s) 367, 379, 533
TaiI ACGT 2 cut(s) 148, 363
TaqI TCGA 2 cut(s) 307, 692
TasI AATT 5 cut(s) 248, 263, 287, 628, 800
TfiI GAWTC 3 cut(s) 215, 309, 474
Tru1I TTAA 5 cut(s) 192, 251, 615, 741, 909
Tru9I TTAA 5 cut(s) 192, 251, 615, 741, 909
TscAI CASTG 2 cut(s) 462, 1024
TseFI GTSAC 1 cut(s) 701
TseI GCWGC 3 cut(s) 461, 971, 1004
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 6 cut(s) 168, 280, 297, 336, 369, 583
TspGWI ACGGA 1 cut(s) 757
TspRI CASTG 2 cut(s) 462, 1024
Vha464I CTTAAG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 418
XagI CCTNNNNNAGG 1 cut(s) 740
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 2 cut(s) 783, 845
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.