Rw2G039850

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
65339984 .. 65341085
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039850.1

Sequence Viewer

Length: 864 bp
ATGCTGCTTCTTTCTTTATTCATCACCTCTCTTCTAGCCATCACTGCCTCAGCTGGTAATTTTTTTCAAGACTTTGACATTACATTTGGCGATCAACGCGCTAAGATACTCGAAGGAGGACAGTTTCTCACTCTCAACCTCGACAAGTATTCTGGGTCTGGTTTCAAATCCAAGAACGAGTACTTATTCGGAAGGATCGACATGCAAATCAAGCTCGTGCCTGGTAACTCGGCTGGCACTGTCACTACATACTATTTATCCTCTGAAGGTCCAACTCATGATGAAATCGACTTCGAGTTTTTGGGCAACTCATCTGGAGATCCCTACACTCTCCACACCAATGTGTTCAGTCAGGGCAAAGGGGACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAACGGCCTTCCACACCTACTCATTTGTCTGGAACTCCCAACGCATTATATTCTTTGTCGACAACATTCCAATCCGAGTGTTCAACAACATGGAATCATTTGGTGTTCCATTCCCTAAAAACCAGCCAATGAGGATTTACTCGAGTCTGTGGAATGCCGACGACTGGGCTACACAAGGCGGGCGTGTGAAGACTGACTGGACGCAAGCTCCTTTCACTGCTTCGTATCGAAACTTCAAGGCCAATGCTTGTGTTGCTGGATCCTCCTCCTCCTCCTGCGGTGTCGCCACCGTTGCATCGACTGATAAGACACAGCAGAGTGCATGGCAGACTCAAACGCTTGATGCTGCAGGGCGAAATAGGCTTCGATGGGTGCAACAAAAGTTCATGGTGTACAACTACTGCTCTGACCTCAAAAGATTCCCCCAAGGCCTTCCGGTCGAATGCAAGCGATCAAGGTTCTAG

Protein Analysis

287

Amino Acids

32.47

Weight (kDa)

8.28

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 23 - 201 1e-65 Glycosyl hydrolases family 16
XET_C PF06955 238 - 282 2.8e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 459
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 579, 678
AclWI GGATC 5 cut(s) 203, 314, 389, 654, 667
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 2 cut(s) 182, 794
AfiI CCNNNNNNNGG 1 cut(s) 564
AgsI TTSAA 4 cut(s) 68, 166, 484, 637
AjnI CCWGG 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 341
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 3 cut(s) 53, 214, 608
AluI AGCT 3 cut(s) 53, 214, 608
AlwI GGATC 5 cut(s) 203, 314, 389, 654, 667
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 3 cut(s) 405, 639, 829
ApeKI GCWGC 2 cut(s) 4, 746
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 269
BamHI GGATCC 1 cut(s) 659
BarI GAAGNNNNNNTAC 2 cut(s) 617, 649
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 733
BccI CCATC 3 cut(s) 47, 390, 762
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 222
BfaI CTAG 2 cut(s) 35, 862
BfmI CTRYAG 1 cut(s) 747
BisI GCNGC 2 cut(s) 5, 747
BlsI GCNGC 2 cut(s) 6, 748
BmcAI AGTACT 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 2 cut(s) 704, 733
BmuI ACTGGG 1 cut(s) 574
BpiI GAAGAC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 826
BsaWI WCCGGW 1 cut(s) 835
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 564
Bse1I ACTGG 2 cut(s) 569, 602
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 826
BseLI CCNNNNNNNGG 1 cut(s) 564
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 569, 602
BseRI GAGGAG 3 cut(s) 655, 658, 661
BseXI GCAGC 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 840
BshFI GGCC 3 cut(s) 407, 641, 831
BsiEI CGRYCG 1 cut(s) 840
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 836
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 2 cut(s) 559, 848
BsnI GGCC 3 cut(s) 407, 641, 831
BsoBI CYCGRG 1 cut(s) 541
Bsp1407I TGTACA 1 cut(s) 792
Bsp143I GATC 6 cut(s) 91, 195, 319, 394, 659, 851
BspACI CCGC 2 cut(s) 579, 678
BspANI GGCC 3 cut(s) 407, 641, 831
BspCNI CTCAG 1 cut(s) 62
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 5 cut(s) 203, 314, 389, 654, 667
BsrGI TGTACA 1 cut(s) 792
BsrI ACTGG 2 cut(s) 569, 602
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 6 cut(s) 91, 195, 319, 394, 659, 851
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 826
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 3 cut(s) 123, 241, 691
Bst6I CTCTTC 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 792
BstC8I GCNNGC 4 cut(s) 235, 581, 606, 848
BstDEI CTNAG 2 cut(s) 49, 102
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 6 cut(s) 94, 198, 322, 397, 662, 854
BstMBI GATC 6 cut(s) 91, 195, 319, 394, 659, 851
BstMCI CGRYCG 1 cut(s) 840
BstMWI GCNNNNNNNGC 6 cut(s) 44, 96, 211, 653, 692, 760
BstNI CCWGG 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 747
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 733
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 2 cut(s) 319, 659
BstYI RGATCY 2 cut(s) 319, 659
BsuRI GGCC 3 cut(s) 407, 641, 831
BtsI GCAGTG 2 cut(s) 42, 615
BtsIMutI CAGTG 3 cut(s) 42, 237, 615
Cac8I GCNNGC 4 cut(s) 235, 581, 606, 848
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 1 cut(s) 269
CseI GACGC 1 cut(s) 610
Csp6I GTAC 2 cut(s) 181, 793
CviAII CATG 5 cut(s) 202, 278, 490, 723, 787
CviQI GTAC 2 cut(s) 181, 793
DdeI CTNAG 2 cut(s) 49, 102
DpnI GATC 6 cut(s) 93, 197, 321, 396, 661, 853
DpnII GATC 6 cut(s) 91, 195, 319, 394, 659, 851
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 826
Eco147I AGGCCT 1 cut(s) 831
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 5 cut(s) 205, 281, 493, 726, 790
FaiI YATR 7 cut(s) 203, 250, 279, 449, 491, 724, 788
FaqI GGGAC 1 cut(s) 377
FatI CATG 5 cut(s) 201, 277, 489, 722, 786
FauI CCCGC 1 cut(s) 572
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 5, 747
Fsp4HI GCNGC 2 cut(s) 5, 747
FspBI CTAG 2 cut(s) 35, 862
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 5, 747
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 3 cut(s) 407, 641, 831
HapII CCGG 1 cut(s) 836
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 205, 281, 493, 726, 790
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 4 cut(s) 494, 544, 730, 819
HpaII CCGG 1 cut(s) 836
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 460, 793
Hpy188I TCNGA 4 cut(s) 191, 265, 476, 808
Hpy188III TCNNGA 4 cut(s) 68, 278, 315, 430
Hpy8I GTNNAC 2 cut(s) 460, 793
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 5 cut(s) 107, 186, 260, 418, 842
HpyCH4III ACNGT 3 cut(s) 123, 241, 691
HpyCH4V TGCA 6 cut(s) 205, 695, 722, 749, 775, 846
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 96, 211, 653, 692, 760
HpyF3I CTNAG 2 cut(s) 49, 102
Hsp92II CATG 5 cut(s) 205, 281, 493, 726, 790
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 6 cut(s) 91, 195, 319, 394, 659, 851
LmnI GCTCC 1 cut(s) 613
Lsp1109I GCAGC 1 cut(s) 733
LweI GCATC 2 cut(s) 704, 733
MaeI CTAG 2 cut(s) 35, 862
MaeIII GTNAC 2 cut(s) 224, 241
MalI GATC 6 cut(s) 93, 197, 321, 396, 661, 853
MboI GATC 6 cut(s) 91, 195, 319, 394, 659, 851
MboII GAAGA 2 cut(s) 23, 601
MflI RGATCY 2 cut(s) 319, 659
MluCI AATT 2 cut(s) 58, 377
MlyI GAGTC 2 cut(s) 553, 724
MmeI TCCRAC 1 cut(s) 296
MslI CAYNNNNRTG 2 cut(s) 339, 341
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 1 cut(s) 836
MspR9I CCNGG 1 cut(s) 222
Mva1269I GAATGC 2 cut(s) 559, 848
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 6 cut(s) 44, 96, 211, 653, 692, 760
NdeII GATC 6 cut(s) 91, 195, 319, 394, 659, 851
NlaIII CATG 5 cut(s) 205, 281, 493, 726, 790
NlaIV GGNNCC 1 cut(s) 661
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 341
PaeR7I CTCGAG 1 cut(s) 541
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 2 cut(s) 559, 848
PfeI GAWTC 2 cut(s) 494, 819
PkrI GCNGC 2 cut(s) 6, 748
PleI GAGTC 2 cut(s) 552, 724
PpsI GAGTC 2 cut(s) 552, 724
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 1 cut(s) 269
PspXI VCTCGAGB 1 cut(s) 541
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 2 cut(s) 319, 659
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 2 cut(s) 182, 794
RsaNI GTAC 2 cut(s) 181, 793
RseI CAYNNNNRTG 2 cut(s) 339, 341
SalI GTCGAC 1 cut(s) 458
SatI GCNGC 2 cut(s) 5, 747
Sau3AI GATC 6 cut(s) 91, 195, 319, 394, 659, 851
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 182
SchI GAGTC 2 cut(s) 553, 724
ScrFI CCNGG 1 cut(s) 222
SetI ASST 9 cut(s) 29, 55, 141, 216, 271, 419, 610, 813, 860
SfaNI GCATC 2 cut(s) 704, 733
SfcI CTRYAG 1 cut(s) 747
Sfr274I CTCGAG 1 cut(s) 541
SinI GGWCC 1 cut(s) 269
SlaI CTCGAG 1 cut(s) 541
SmiMI CAYNNNNRTG 2 cut(s) 339, 341
SmlI CTYRAG 1 cut(s) 541
SmoI CTYRAG 1 cut(s) 541
Sse9I AATT 2 cut(s) 58, 377
SseBI AGGCCT 1 cut(s) 831
SsiI CCGC 2 cut(s) 579, 678
SspMI CTAG 2 cut(s) 35, 862
StuI AGGCCT 1 cut(s) 831
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 3 cut(s) 123, 241, 691
TasI AATT 2 cut(s) 58, 377
TatI WGTACW 2 cut(s) 180, 792
TfiI GAWTC 2 cut(s) 494, 819
TscAI CASTG 3 cut(s) 49, 244, 622
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 2 cut(s) 4, 746
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 10, 297, 775
TspRI CASTG 3 cut(s) 49, 244, 622
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 35, 862
ZrmI AGTACT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.