pycom17g13320

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
10981934 .. 10983158
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13320.1

Sequence Viewer

Length: 1017 bp
ATGACAGCCCTATTATTCACGCGGCATACTTTATACTACTCGCTCGAAGGTTTCCAGCATAGAAGGGGCTCTCACAACTCCAATTTATACCATCAAACCACAAACTGCTTCATTTCTCTCTCTGAAGCAATCAAAATGTCTTATTCTTCTAAGCTCTCAATGGTGCTTCTGCTTTCTTTGTCCATAACTTGTGTCATGGCCATGGCTGCCTCGGCTGGCAATTTCTATCAAGACTTTGATTTTACATTTGGCGACGGACGTGCCAAGATACTCAACGGAGGACAGCTTCTCACACTTAACCTTGATCAAGCTTCCGGTTCCGGTTTCAAATCCAAGAACGACTACTTATTTGGAAGAATTGATATGCAGATCAAGCTTGTTGCCGGTAACTCAGCGGGAACTGTTACTGCCTACTATTTATCCTCCGAAGGTCCAACTCATGATGAAATCGACTTTGAGTTTTTGGGAAACGTATCCGGAGATCCCTGCACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGGAATAGAGAACAGCAGTTCCACCTGTGGTTTGATCCCACAAAGGCCTTCCACACCTACTCCATTGTTTGGAACACGCAACGCATTATATTTTTGGTGGATAACATTCCAATCAGAGTGTTCAACAACTTGGAATCAGTTGGAGTCCCATTCCCCAAAAACCAGCCCATGCGGATTTACTCAAGCTTGTGGAATGCAGATGACTGGGCAACAAGAGGTGGCCTTGTCAAGACTGATTGGACTAAAGCTCCCTTCACTGCCTCTTACAGAAACTTCAAGGCCAATGCTTGTACTGCTGGCTCATCATCCTCATGTGCCTCCACTGCATCTACCAATTCAGTGGGGGCCAGTGCATGGCAGACTCAAGGGCTCGATGCCGCCGGCCGTAACCGGCTTCGATGGGTGCAACAAAAGTTCATGGTCTACAACTACTGCAATGACCTTAAACGTTTCCCACAAGGCCTCCCAGCGGAGTGCAGAAGATCAAGGTTCTAG

Protein Analysis

339

Amino Acids

37.84

Weight (kDa)

9.11

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 76 - 256 5e-66 Glycosyl hydrolases family 16
XET_C PF06955 291 - 333 3.1e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 591, 876
AccI GTMKAC 1 cut(s) 945
AccII CGCG 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 476
AciI CCGC 5 cut(s) 22, 395, 694, 900, 992
AclI AACGTT 1 cut(s) 970
AclWI GGATC 2 cut(s) 476, 551
AcoI YGGCCR 2 cut(s) 198, 904
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 814
AfiI CCNNNNNNNGG 3 cut(s) 591, 876, 991
AgsI TTSAA 3 cut(s) 328, 646, 799
AjiI CACGTC 1 cut(s) 260
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 6 cut(s) 154, 286, 311, 376, 708, 770
AluI AGCT 6 cut(s) 154, 286, 311, 376, 708, 770
AlwI GGATC 2 cut(s) 476, 551
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 7 cut(s) 198, 567, 742, 801, 867, 904, 982
ApeKI GCWGC 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspS9I GGNCC 2 cut(s) 431, 867
AvaII GGWCC 1 cut(s) 431
BalI TGGCCA 1 cut(s) 200
BanII GRGCYC 2 cut(s) 71, 894
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 99, 915
BceAI ACGGC 1 cut(s) 891
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciVI GTATCC 1 cut(s) 484
BclI TGATCA 1 cut(s) 304
BfaI CTAG 1 cut(s) 1015
BfuI GTATCC 1 cut(s) 484
BisI GCNGC 3 cut(s) 23, 207, 900
BlsI GCNGC 3 cut(s) 24, 208, 901
Bme18I GGWCC 1 cut(s) 431
BmgBI CACGTC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 431, 867
BmiI GGNNCC 2 cut(s) 319, 868
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 2 cut(s) 857, 886
BmuI ACTGGG 1 cut(s) 736
BpuEI CTTGAG 2 cut(s) 688, 870
BsaJI CCNNGG 3 cut(s) 201, 210, 514
BsaWI WCCGGW 3 cut(s) 314, 320, 476
BsaXI ACNNNNNCTCC 6 cut(s) 566, 596, 754, 784, 969, 999
Bsc4I CCNNNNNNNGG 3 cut(s) 591, 876, 991
Bse118I RCCGGY 3 cut(s) 383, 902, 912
Bse1I ACTGG 2 cut(s) 731, 870
Bse3DI GCAATG 1 cut(s) 964
BseAI TCCGGA 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 201, 210, 514
BseGI GGATG 1 cut(s) 827
BseLI CCNNNNNNNGG 3 cut(s) 591, 876, 991
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 731, 870
BseX3I CGGCCG 1 cut(s) 904
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 988
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 7 cut(s) 200, 569, 744, 803, 869, 906, 984
BsiEI CGRYCG 1 cut(s) 907
BsiSI CCGG 6 cut(s) 315, 321, 384, 477, 903, 913
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 3 cut(s) 591, 876, 991
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 7 cut(s) 200, 569, 744, 803, 869, 906, 984
Bsp1286I GDGCHC 2 cut(s) 71, 894
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 5 cut(s) 304, 369, 481, 556, 1004
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 5 cut(s) 22, 395, 694, 900, 992
BspANI GGCC 7 cut(s) 200, 569, 744, 803, 869, 906, 984
BspCNI CTCAG 1 cut(s) 404
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 319, 868
BspPI GGATC 2 cut(s) 476, 551
BsrDI GCAATG 1 cut(s) 964
BsrFI RCCGGY 3 cut(s) 383, 902, 912
BsrI ACTGG 2 cut(s) 731, 870
BssAI RCCGGY 3 cut(s) 383, 902, 912
BssECI CCNNGG 3 cut(s) 201, 210, 514
BssMI GATC 5 cut(s) 304, 369, 481, 556, 1004
BssT1I CCWWGG 2 cut(s) 201, 514
Bst4CI ACNGT 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 217, 820, 904
BstDEI CTNAG 2 cut(s) 150, 391
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 827
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 5 cut(s) 307, 372, 484, 559, 1007
BstMBI GATC 5 cut(s) 304, 369, 481, 556, 1004
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 5 cut(s) 206, 212, 373, 815, 845
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 1 cut(s) 481
BstZI CGGCCG 1 cut(s) 904
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 7 cut(s) 200, 569, 744, 803, 869, 906, 984
BtgI CCRYGG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 827
BtsI GCAGTG 2 cut(s) 777, 843
BtsIMutI CAGTG 4 cut(s) 777, 843, 867, 877
Cac8I GCNNGC 3 cut(s) 217, 820, 904
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 3 cut(s) 383, 902, 912
Cfr13I GGNCC 2 cut(s) 431, 867
Csp6I GTAC 1 cut(s) 813
CviAII CATG 7 cut(s) 196, 202, 440, 691, 834, 876, 940
CviQI GTAC 1 cut(s) 813
DdeI CTNAG 2 cut(s) 150, 391
DpnI GATC 5 cut(s) 306, 371, 483, 558, 1006
DpnII GATC 5 cut(s) 304, 369, 481, 556, 1004
EaeI YGGCCR 2 cut(s) 198, 904
EagI CGGCCG 1 cut(s) 904
EclXI CGGCCG 1 cut(s) 904
Eco130I CCWWGG 2 cut(s) 201, 514
Eco147I AGGCCT 2 cut(s) 569, 984
Eco24I GRGCYC 2 cut(s) 71, 894
Eco47I GGWCC 1 cut(s) 431
Eco52I CGGCCG 1 cut(s) 904
Eco57I CTGAAG 1 cut(s) 144
EcoT14I CCWWGG 2 cut(s) 201, 514
EcoT38I GRGCYC 2 cut(s) 71, 894
ErhI CCWWGG 2 cut(s) 201, 514
FaeI CATG 7 cut(s) 199, 205, 443, 694, 837, 879, 943
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 195, 201, 439, 690, 833, 875, 939
FauI CCCGC 1 cut(s) 388
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 3 cut(s) 23, 207, 900
FokI GGATG 1 cut(s) 814
FriOI GRGCYC 2 cut(s) 71, 894
Fsp4HI GCNGC 3 cut(s) 23, 207, 900
FspBI CTAG 1 cut(s) 1015
GluI GCNGC 3 cut(s) 23, 207, 900
GsaI CCCAGC 1 cut(s) 992
HaeIII GGCC 7 cut(s) 200, 569, 744, 803, 869, 906, 984
HapII CCGG 6 cut(s) 315, 321, 384, 477, 903, 913
Hin1II CATG 7 cut(s) 199, 205, 443, 694, 837, 879, 943
HindIII AAGCTT 3 cut(s) 309, 374, 706
HinfI GANTC 3 cut(s) 656, 666, 883
HpaII CCGG 6 cut(s) 315, 321, 384, 477, 903, 913
Hpy166II GTNNAC 1 cut(s) 946
Hpy188I TCNGA 3 cut(s) 124, 427, 638
Hpy188III TCNNGA 4 cut(s) 230, 440, 477, 751
Hpy8I GTNNAC 1 cut(s) 946
Hpy99I CGWCG 1 cut(s) 257
HpyAV CCTTC 5 cut(s) 41, 57, 422, 580, 784
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 3 cut(s) 259, 471, 970
HpyCH4V TGCA 8 cut(s) 367, 489, 719, 848, 875, 928, 957, 999
HpyF10VI GCNNNNNNNGC 5 cut(s) 206, 212, 373, 815, 845
HpyF3I CTNAG 2 cut(s) 150, 391
HpySE526I ACGT 3 cut(s) 259, 471, 970
Hsp92II CATG 7 cut(s) 199, 205, 443, 694, 837, 879, 943
Kpn2I TCCGGA 1 cut(s) 476
KroI GCCGGC 1 cut(s) 902
KroNI GCCGGC 1 cut(s) 904
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 5 cut(s) 304, 369, 481, 556, 1004
LmnI GCTCC 1 cut(s) 775
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 857, 886
MaeI CTAG 1 cut(s) 1015
MaeII ACGT 3 cut(s) 259, 471, 970
MaeIII GTNAC 3 cut(s) 386, 403, 908
MalI GATC 5 cut(s) 306, 371, 483, 558, 1006
MboI GATC 5 cut(s) 304, 369, 481, 556, 1004
MboII GAAGA 3 cut(s) 138, 366, 1014
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 71, 894
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 4 cut(s) 82, 220, 357, 856
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 2 cut(s) 675, 877
MmeI TCCRAC 2 cut(s) 458, 643
MnlI CCTC 8 cut(s) 220, 272, 433, 731, 793, 841, 850, 995
Mox20I TGGCCA 1 cut(s) 200
MroI TCCGGA 1 cut(s) 476
MroNI GCCGGC 1 cut(s) 902
MscI TGGCCA 1 cut(s) 200
MseI TTAA 2 cut(s) 297, 966
MslI CAYNNNNRTG 3 cut(s) 200, 501, 832
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 395, 992
MspI CCGG 6 cut(s) 315, 321, 384, 477, 903, 913
Mva1269I GAATGC 1 cut(s) 721
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 5 cut(s) 206, 212, 373, 815, 845
NaeI GCCGGC 1 cut(s) 904
NcoI CCATGG 1 cut(s) 201
NdeII GATC 5 cut(s) 304, 369, 481, 556, 1004
NgoMIV GCCGGC 1 cut(s) 902
NlaIII CATG 7 cut(s) 199, 205, 443, 694, 837, 879, 943
NlaIV GGNNCC 2 cut(s) 319, 868
NmeAIII GCCGAG 1 cut(s) 191
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 2 cut(s) 569, 984
PctI GAATGC 1 cut(s) 721
PdiI GCCGGC 1 cut(s) 904
PfeI GAWTC 1 cut(s) 656
PflMI CCANNNNNTGG 2 cut(s) 591, 876
PkrI GCNGC 3 cut(s) 24, 208, 901
PleI GAGTC 2 cut(s) 674, 877
PpsI GAGTC 2 cut(s) 674, 877
Psp1406I AACGTT 1 cut(s) 970
PspFI CCCAGC 1 cut(s) 988
PspN4I GGNNCC 2 cut(s) 319, 868
PspPI GGNCC 2 cut(s) 431, 867
PsuI RGATCY 1 cut(s) 481
RsaI GTAC 1 cut(s) 814
RsaNI GTAC 1 cut(s) 813
RseI CAYNNNNRTG 3 cut(s) 200, 501, 832
SaqAI TTAA 2 cut(s) 297, 966
SatI GCNGC 3 cut(s) 23, 207, 900
Sau3AI GATC 5 cut(s) 304, 369, 481, 556, 1004
Sau96I GGNCC 2 cut(s) 431, 867
SchI GAGTC 2 cut(s) 675, 877
SduI GDGCHC 2 cut(s) 71, 894
SfaNI GCATC 2 cut(s) 857, 886
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 3 cut(s) 200, 501, 832
SmlI CTYRAG 2 cut(s) 703, 885
SmoI CTYRAG 2 cut(s) 703, 885
Sse9I AATT 4 cut(s) 82, 220, 357, 856
SseBI AGGCCT 2 cut(s) 569, 984
SsiI CCGC 5 cut(s) 22, 395, 694, 900, 992
SspMI CTAG 1 cut(s) 1015
StuI AGGCCT 2 cut(s) 569, 984
StyI CCWWGG 2 cut(s) 201, 514
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 3 cut(s) 262, 474, 973
TaqI TCGA 4 cut(s) 45, 450, 894, 919
TasI AATT 4 cut(s) 82, 220, 357, 856
TatI WGTACW 1 cut(s) 812
TauI GCSGC 2 cut(s) 25, 902
TfiI GAWTC 1 cut(s) 656
Tru1I TTAA 2 cut(s) 297, 966
Tru9I TTAA 2 cut(s) 297, 966
TscAI CASTG 4 cut(s) 784, 850, 867, 877
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 100, 459, 928
TspGWI ACGGA 2 cut(s) 270, 291
TspRI CASTG 4 cut(s) 784, 850, 867, 877
Van91I CCANNNNNTGG 2 cut(s) 591, 876
VpaK11BI GGWCC 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 945
XspI CTAG 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.