Prupe.3G171800_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19028231 .. 19029748
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G171800.1

Sequence Viewer

Length: 867 bp
ATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAGGTCTCAATGGTGCTCATTCTTTCTTTGGTCATAACTTCTCTCATGGCCATGACTGCCTCAGCTGGTAATTTCTTTCAAGACTTTGATGTAACATTCGGCGATCAGCGCGCTAAGATACTAAATGGAGGACAACTTCTCACACTCAACCTTGACAAGGCTTCTGGGTCTGGTTTCAAATCCAAGAATGAGTACTTATTGGGCAGGATTGACATGCAGATCAAGTTGGTCTCTGGCAACTCAGCTGGCACTGTCACTGCATACTATTTATCTTCTGAGGGTCCAACTCATGATGAGATTGACTTCGAGTTTTTGGGAAACTTATCTGGAGACCCCTACACTCTCCATACCAATGTTTTCAGCCAAGGAAAAGGAAACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAGAGGCCTTCCACACCTATTCAATTGTCTGGAACAGCCAGAGGATTATATTCTTAGTGGACAACATTCCAATCAGAGTGTTCACCAACTTGGAAACAATTGGAGTTCCATTTCCCAAAAACCAACCCATGAGGATTTACTCAAGCCTCTGGAATGCTGATGACTGGGCAACAAGAGGTGGACTTGTGAAGACTGACTGGACACAAGCTCCTTTCACTGCCTCTTACAGAAACTTCCAGGCCTCCACCACATCTACTAACTCCTTAACAGAGCAGAGTGCATGGCAGACTCAAGGGCTAGATGCTGCAGGCCGAAACCGGCTTCGATGGGTGCAACAAAAGTTCATGGTCTACAACTACTGTTCTGACCTCAAACGCTTCCCACAAGGCCTCCCAGTTGAATGCAGACGATCGAGGTTCTAG

Protein Analysis

289

Amino Acids

32.35

Weight (kDa)

8.48

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 795
AccII CGCG 1 cut(s) 144
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 4 cut(s) 113, 211, 468, 845
AjnI CCWGG 1 cut(s) 681
AloI GAACNNNNNNTCC 2 cut(s) 408, 440
AluBI AGCT 3 cut(s) 98, 278, 653
AluI AGCT 3 cut(s) 98, 278, 653
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 3 cut(s) 43, 268, 357
AlwI GGATC 1 cut(s) 434
AoxI GGCC 5 cut(s) 81, 450, 684, 754, 832
ApeKI GCWGC 1 cut(s) 749
AspLEI GCGC 2 cut(s) 144, 146
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 51
BbvCI CCTCAGC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 736
BccI CCATC 2 cut(s) 435, 765
BciT130I CCWGG 1 cut(s) 683
BcoDI GTCTC 3 cut(s) 43, 268, 357
BfaI CTAG 2 cut(s) 743, 865
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 683
BmrI ACTGGG 2 cut(s) 619, 833
BmsI GCATC 1 cut(s) 736
BmuI ACTGGG 2 cut(s) 619, 833
BpiI GAAGAC 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 94
BpuEI CTTGAG 2 cut(s) 571, 720
BsaI GGTCTC 3 cut(s) 43, 268, 357
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 4 cut(s) 637, 667, 819, 849
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 762
Bse1I ACTGG 3 cut(s) 614, 647, 839
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 1 cut(s) 397
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 108, 288, 300
BseNI ACTGG 3 cut(s) 614, 647, 839
BsePI GCGCGC 1 cut(s) 142
BseXI GCAGC 1 cut(s) 736
Bsh1236I CGCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 857
BshFI GGCC 5 cut(s) 83, 452, 686, 756, 834
BsiEI CGRYCG 1 cut(s) 857
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 763
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 3 cut(s) 43, 268, 357
BsmI GAATGC 2 cut(s) 604, 851
BsnI GGCC 5 cut(s) 83, 452, 686, 756, 834
Bso31I GGTCTC 3 cut(s) 43, 268, 357
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 4 cut(s) 136, 252, 439, 854
BspANI GGCC 5 cut(s) 83, 452, 686, 756, 834
BspCNI CTCAG 3 cut(s) 107, 287, 301
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 754
BspPI GGATC 1 cut(s) 434
BspTNI GGTCTC 3 cut(s) 43, 268, 357
BsrFI RCCGGY 1 cut(s) 762
BsrI ACTGG 3 cut(s) 614, 647, 839
BssAI RCCGGY 1 cut(s) 762
BssECI CCNNGG 1 cut(s) 397
BssHII GCGCGC 1 cut(s) 142
BssMI GATC 4 cut(s) 136, 252, 439, 854
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 2 cut(s) 286, 806
BstC8I GCNNGC 3 cut(s) 144, 280, 754
BstDEI CTNAG 6 cut(s) 33, 94, 147, 274, 309, 499
BstENI CCTNNNNNAGG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 2 cut(s) 144, 146
BstKTI GATC 4 cut(s) 139, 255, 442, 857
BstMAI GTCTC 3 cut(s) 43, 268, 357
BstMBI GATC 4 cut(s) 136, 252, 439, 854
BstMCI CGRYCG 1 cut(s) 857
BstMWI GCNNNNNNNGC 2 cut(s) 89, 141
BstNI CCWGG 1 cut(s) 683
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 1 cut(s) 750
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 641
BsuRI GGCC 5 cut(s) 83, 452, 686, 756, 834
BtsI GCAGTG 2 cut(s) 288, 660
BtsIMutI CAGTG 3 cut(s) 282, 288, 660
Cac8I GCNNGC 3 cut(s) 144, 280, 754
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 144, 146
Cfr10I RCCGGY 1 cut(s) 762
Cfr13I GGNCC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 226
CviAII CATG 7 cut(s) 79, 85, 247, 323, 574, 726, 790
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 6 cut(s) 33, 94, 147, 274, 309, 499
DpnI GATC 4 cut(s) 138, 254, 441, 856
DpnII GATC 4 cut(s) 136, 252, 439, 854
EaeI YGGCCR 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 397
Eco147I AGGCCT 3 cut(s) 452, 686, 834
Eco31I GGTCTC 3 cut(s) 43, 268, 357
Eco47I GGWCC 1 cut(s) 314
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 7 cut(s) 82, 88, 250, 326, 577, 729, 793
FatI CATG 7 cut(s) 78, 84, 246, 322, 573, 725, 789
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 1 cut(s) 750
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 2 cut(s) 743, 865
GlaI GCGC 2 cut(s) 143, 145
GluI GCNGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 381
HaeIII GGCC 5 cut(s) 83, 452, 686, 756, 834
HapII CCGG 1 cut(s) 763
HhaI GCGC 2 cut(s) 144, 146
Hin1II CATG 7 cut(s) 82, 88, 250, 326, 577, 729, 793
Hin6I GCGC 2 cut(s) 142, 144
HinP1I GCGC 2 cut(s) 142, 144
HinfI GANTC 1 cut(s) 733
HpaII CCGG 1 cut(s) 763
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 4 cut(s) 505, 528, 626, 796
Hpy188I TCNGA 3 cut(s) 310, 521, 811
Hpy188III TCNNGA 5 cut(s) 113, 323, 360, 475, 595
Hpy8I GTNNAC 4 cut(s) 505, 528, 626, 796
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 2 cut(s) 286, 806
HpyCH4V TGCA 6 cut(s) 250, 293, 725, 752, 778, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 141
HpyF3I CTNAG 6 cut(s) 33, 94, 147, 274, 309, 499
Hsp92II CATG 7 cut(s) 82, 88, 250, 326, 577, 729, 793
HspAI GCGC 2 cut(s) 142, 144
Kzo9I GATC 4 cut(s) 136, 252, 439, 854
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 736
MaeI CTAG 2 cut(s) 743, 865
MaeIII GTNAC 2 cut(s) 124, 286
MalI GATC 4 cut(s) 138, 254, 441, 856
MboI GATC 4 cut(s) 136, 252, 439, 854
MboII GAAGA 9 cut(s) 3, 6, 9, 12, 15, 18, 21, 297, 646
MfeI CAATTG 2 cut(s) 468, 543
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 4 cut(s) 103, 422, 468, 543
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 710
MslI CAYNNNNRTG 2 cut(s) 83, 384
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 98, 278
MspI CCGG 1 cut(s) 763
MspR9I CCNGG 1 cut(s) 683
MunI CAATTG 2 cut(s) 468, 543
Mva1269I GAATGC 2 cut(s) 604, 851
MvaI CCWGG 1 cut(s) 683
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 89, 141
NdeII GATC 4 cut(s) 136, 252, 439, 854
NlaIII CATG 7 cut(s) 82, 88, 250, 326, 577, 729, 793
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 286
NspI RCATGY 1 cut(s) 250
PagI TCATGA 1 cut(s) 322
PauI GCGCGC 1 cut(s) 142
PceI AGGCCT 3 cut(s) 452, 686, 834
PctI GAATGC 2 cut(s) 604, 851
PkrI GCNGC 1 cut(s) 751
Ple19I CGATCG 1 cut(s) 857
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 754
PteI GCGCGC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 857
PvuII CAGCTG 2 cut(s) 98, 278
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 2 cut(s) 83, 384
SaqAI TTAA 1 cut(s) 710
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 4 cut(s) 136, 252, 439, 854
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 1 cut(s) 51
SetI ASST 9 cut(s) 39, 100, 186, 280, 464, 625, 655, 816, 863
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 750
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 83, 384
SmlI CTYRAG 2 cut(s) 586, 735
SmoI CTYRAG 2 cut(s) 586, 735
Sse9I AATT 4 cut(s) 103, 422, 468, 543
SseBI AGGCCT 3 cut(s) 452, 686, 834
SspMI CTAG 2 cut(s) 743, 865
StuI AGGCCT 3 cut(s) 452, 686, 834
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 286, 806
TaqI TCGA 3 cut(s) 339, 769, 857
TasI AATT 4 cut(s) 103, 422, 468, 543
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 1 cut(s) 710
Tru9I TTAA 1 cut(s) 710
TscAI CASTG 3 cut(s) 289, 295, 667
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 778
TspRI CASTG 3 cut(s) 289, 295, 667
VpaK11BI GGWCC 1 cut(s) 314
XagI CCTNNNNNAGG 1 cut(s) 188
XceI RCATGY 1 cut(s) 250
XmiI GTMKAC 1 cut(s) 795
XspI CTAG 2 cut(s) 743, 865
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.