Rh2BG499200

xyloglucan:xyloglucosyl transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000406
Physical Location & Seq
Forward (+)
70519133 .. 70522821
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG499200.1

Sequence Viewer

Length: 471 bp
ATGGTGGATAACAGTCCCATCAGGATTTTCAACAACGTCGAAGCATCAATTGATGTTCCATATCCTCATAGCAAACCGATGAGGATTTACTGCAGCTTCTGGAATGCCGATGACTGGGCTACACAAGGTGGAAAAGTAAAGGCCGACTGGTCTCAAGGTTCTAAAACAGTCTCTTACAAAGACCACAAGATCAATGCTTGTCTTCCTTGGGATCAGGGCTGTGCTTCGAACACAGCCGGCAATTCATGGCAGAATATTGATCTTGGTCGTTTAGGTCATGATAGGCTTCGATGGGTACAAGAGAAGTACAGGATCAGCAACTACTGTGACCCCAGTAAATCTCCCCAAGGTGTCCCCCCACGCGAGTGTATGCACTCCGAGTTTCAGAGCCCCCCAAATCCCAACCCTGCAACTCCCCGCGCTCCCTACATTCCCGACCTTAAAAATCCCGGCAACAAACCCAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

156

Amino Acids

17.69

Weight (kDa)

8.8

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 1 - 51 4.3e-12 Glycosyl hydrolases family 16
XET_C PF06955 80 - 123 1.7e-06 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 363, 420
AciI CCGC 1 cut(s) 418
AclWI GGATC 2 cut(s) 219, 320
AdeI CACNNNGTG 1 cut(s) 128
AfaI GTAC 2 cut(s) 297, 308
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 364
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 156, 175
AlwI GGATC 2 cut(s) 219, 320
AlwNI CAGNNNCTG 1 cut(s) 99
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 93
AspLEI GCGC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 450
AsuII TTCGAA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 105
BccI CCATC 2 cut(s) 26, 285
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 2 cut(s) 156, 175
BfaI CTAG 1 cut(s) 469
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 450
BmrI ACTGGG 2 cut(s) 124, 327
BmsI GCATC 1 cut(s) 53
BmuI ACTGGG 2 cut(s) 124, 327
BpiI GAAGAC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 206, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 119, 152, 333
BseDI CCNNGG 2 cut(s) 206, 346
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 119, 152, 333
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 363, 420
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 237, 450
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 156, 175
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 4 cut(s) 189, 211, 259, 312
BspACI CCGC 1 cut(s) 418
BspANI GGCC 1 cut(s) 143
BspFNI CGCG 2 cut(s) 363, 420
BspHI TCATGA 1 cut(s) 277
BspMAI CTGCAG 1 cut(s) 95
BspPI GGATC 2 cut(s) 219, 320
BspT104I TTCGAA 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 3 cut(s) 119, 152, 333
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 206, 346
BssMI GATC 4 cut(s) 189, 211, 259, 312
BssT1I CCWWGG 2 cut(s) 206, 346
Bst4CI ACNGT 3 cut(s) 14, 169, 326
BstBI TTCGAA 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 238
BstFNI CGCG 2 cut(s) 363, 420
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 4 cut(s) 192, 214, 262, 315
BstMAI GTCTC 2 cut(s) 156, 175
BstMBI GATC 4 cut(s) 189, 211, 259, 312
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 2 cut(s) 363, 420
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 238
CaiI CAGNNNCTG 1 cut(s) 99
CciI TCATGA 1 cut(s) 277
CfoI GCGC 1 cut(s) 422
Cfr10I RCCGGY 1 cut(s) 236
Csp6I GTAC 2 cut(s) 296, 307
CviAII CATG 2 cut(s) 246, 278
CviJI RGCY 7 cut(s) 96, 119, 143, 219, 236, 286, 390
CviKI_1 RGCY 7 cut(s) 96, 119, 143, 219, 236, 286, 390
CviQI GTAC 2 cut(s) 296, 307
DpnI GATC 4 cut(s) 191, 213, 261, 314
DpnII GATC 4 cut(s) 189, 211, 259, 312
DraIII CACNNNGTG 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 206, 346
Eco24I GRGCYC 1 cut(s) 392
Eco31I GGTCTC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 206, 346
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 2 cut(s) 206, 346
FaeI CATG 2 cut(s) 249, 281
FaiI YATR 5 cut(s) 61, 69, 247, 279, 371
FaqI GGGAC 1 cut(s) 338
FatI CATG 2 cut(s) 245, 277
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 94
FspBI CTAG 1 cut(s) 469
GlaI GCGC 1 cut(s) 421
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 237, 450
HhaI GCGC 1 cut(s) 422
Hin1II CATG 2 cut(s) 249, 281
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HpaII CCGG 2 cut(s) 237, 450
Hpy188I TCNGA 2 cut(s) 379, 387
Hpy188III TCNNGA 4 cut(s) 22, 100, 278, 434
Hpy99I CGWCG 1 cut(s) 41
HpyCH4III ACNGT 3 cut(s) 14, 169, 326
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 93, 373, 410
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 249, 281
HspAI GCGC 1 cut(s) 420
KroI GCCGGC 1 cut(s) 236
KroNI GCCGGC 1 cut(s) 238
Kzo9I GATC 4 cut(s) 189, 211, 259, 312
LmnI GCTCC 1 cut(s) 427
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 469
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 191, 213, 261, 314
MboI GATC 4 cut(s) 189, 211, 259, 312
MboII GAAGA 1 cut(s) 194
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 2 cut(s) 48, 241
MnlI CCTC 2 cut(s) 75, 75
MroNI GCCGGC 1 cut(s) 236
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 2 cut(s) 237, 450
MspR9I CCNGG 1 cut(s) 450
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 109
MvnI CGCG 2 cut(s) 363, 420
NaeI GCCGGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 450
NdeII GATC 4 cut(s) 189, 211, 259, 312
NgoMIV GCCGGC 1 cut(s) 236
NlaIII CATG 2 cut(s) 249, 281
NmuCI GTSAC 1 cut(s) 326
NspV TTCGAA 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 364
PagI TCATGA 1 cut(s) 277
PctI GAATGC 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 99
RsaI GTAC 2 cut(s) 297, 308
RsaNI GTAC 2 cut(s) 296, 307
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 4 cut(s) 189, 211, 259, 312
ScrFI CCNGG 1 cut(s) 450
SduI GDGCHC 1 cut(s) 392
SetI ASST 7 cut(s) 39, 98, 130, 160, 277, 352, 441
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 48, 241
SsiI CCGC 1 cut(s) 418
SspI AATATT 1 cut(s) 256
SspMI CTAG 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 448
StyI CCWWGG 2 cut(s) 206, 346
TaaI ACNGT 3 cut(s) 14, 169, 326
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 39, 227, 289
TasI AATT 2 cut(s) 48, 241
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 234
XspI CTAG 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.