RLG00000020549

xyloglucan:xyloglucosyl transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000406
Physical Location & Seq
Forward (+)
66149272 .. 66151948
2677 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020549

Sequence Viewer

Length: 897 bp
ATGATGGCCGGCATAGCTGCCTCAGCTAATTTCTGGGAAGACTTTGAACAAACATACGGCGACCAGCGTCTTCAATTACTTGATGGAGGGAAACATTTCACACTCAGCCAGGACGCGAATTCTGGGGCGGGATTCAAATCCAAGAACGAATACCTATTTGGACGTTTCGACATGGATATGAAGCTCGCGCCTGGGAACTCAGCTGGTACTGTCACCACATTTTATTTATCTTCTCCTCAAGGGCACGAACACGATGAGATAGACATAGAGTTTTTGGGCAACTCTTCTGGGAGTCCGTACACTCTCCATACCAATGTGTTCAGTAAGGGTAAAGGAAATAAAGAACAACAATTTCATCTTTGGTTTGATCCCACACAAGATTTTCACAACTATACAATTATCTGGAACCCCCATCGTATTATATGGATGGTGGATAACAGTCCCATTAGGATTTTCAACAACGTCGAAGCATCAATTGGTGTTCCATATCCTCATAGCAAACCGATGAGGATTTACTGCAGCTTCTGGAATGCCGATGACTGGGCTACACAAGGTGGAAAAGTAAAGGCCGACTGGTCTCAAGGTTCTAAAACAGTCTCTTACAAAGACCACAAGATCAATGCTTGTCTTCCTTGGGATCAGGCCTGTGCTTCGAACACAGCCGGCAATTCATGGCAGAATATTGATCTTGGTCGTTTAGGTCATGATAGGCTTCGATGGGTACAAGAGAAGTATAGGATCAGCAACTACTGTGACCCCAGTAAATCTCCCCAAGGTGTCCCGCCACGCGAGTGTATGCACTCCGAGTTTCAGAGCCCCCCAAATCCCAACCCTGCAAATCCCCGCGCTCCCAACATTCCCGACCTTAAAAATCCCGGCAACAAACCCAAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

299

Amino Acids

33.74

Weight (kDa)

6.59

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 13 - 193 1e-63 Glycosyl hydrolases family 16
XET_C PF06955 222 - 265 5.1e-06 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 116, 188, 789, 846
AciI CCGC 3 cut(s) 128, 782, 844
AclWI GGATC 3 cut(s) 362, 645, 746
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 118
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 3 cut(s) 208, 299, 723
AfiI CCNNNNNNNGG 1 cut(s) 540
AgsI TTSAA 4 cut(s) 47, 74, 136, 457
AjnI CCWGG 2 cut(s) 108, 190
AjuI GAANNNNNNNTTGG 4 cut(s) 141, 173, 459, 491
AleI CACNNNNGTG 1 cut(s) 790
AluBI AGCT 5 cut(s) 17, 26, 184, 203, 522
AluI AGCT 5 cut(s) 17, 26, 184, 203, 522
Alw26I GTCTC 2 cut(s) 582, 601
AlwI GGATC 3 cut(s) 362, 645, 746
AlwNI CAGNNNCTG 1 cut(s) 525
AoxI GGCC 3 cut(s) 6, 567, 642
ApeKI GCWGC 2 cut(s) 17, 519
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 2 cut(s) 190, 848
AsuC2I CCSGG 1 cut(s) 876
AsuHPI GGTGA 1 cut(s) 205
AsuII TTCGAA 1 cut(s) 653
BaeGI GKGCMC 1 cut(s) 246
BanII GRGCYC 1 cut(s) 818
BbsI GAAGAC 3 cut(s) 45, 62, 620
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 4, 531
BccI CCATC 4 cut(s) 77, 420, 421, 711
BceAI ACGGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 110, 192
BcnI CCSGG 1 cut(s) 876
BcoDI GTCTC 2 cut(s) 582, 601
BfaI CTAG 1 cut(s) 895
BfmI CTRYAG 1 cut(s) 517
BisI GCNGC 2 cut(s) 18, 520
BlsI GCNGC 2 cut(s) 19, 521
Bme1390I CCNGG 3 cut(s) 110, 192, 876
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 3 cut(s) 110, 192, 876
BmrI ACTGGG 2 cut(s) 550, 753
BmsI GCATC 1 cut(s) 479
BmuI ACTGGG 2 cut(s) 550, 753
BoxI GACNNNNGTC 1 cut(s) 66
BpiI GAAGAC 3 cut(s) 45, 62, 620
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 222, 564
BpuMI CCSGG 1 cut(s) 876
BsaBI GATNNNNATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 3 cut(s) 191, 632, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse118I RCCGGY 2 cut(s) 8, 662
Bse1I ACTGG 3 cut(s) 545, 578, 759
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 2 cut(s) 110, 192
BseDI CCNNGG 3 cut(s) 191, 632, 772
BseGI GGATG 1 cut(s) 432
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMII CTCAG 3 cut(s) 36, 118, 213
BseNI ACTGG 3 cut(s) 545, 578, 759
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 246
BseXI GCAGC 2 cut(s) 4, 531
Bsh1236I CGCG 4 cut(s) 116, 188, 789, 846
BshFI GGCC 3 cut(s) 8, 569, 644
BsiSI CCGG 3 cut(s) 9, 663, 876
BslFI GGGAC 2 cut(s) 426, 764
BslI CCNNNNNNNGG 1 cut(s) 540
BsmAI GTCTC 2 cut(s) 582, 601
BsmFI GGGAC 2 cut(s) 426, 764
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 3 cut(s) 8, 569, 644
Bso31I GGTCTC 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 2 cut(s) 246, 818
Bsp143I GATC 5 cut(s) 367, 615, 637, 685, 738
BspACI CCGC 3 cut(s) 128, 782, 844
BspANI GGCC 3 cut(s) 8, 569, 644
BspCNI CTCAG 3 cut(s) 35, 117, 212
BspFNI CGCG 4 cut(s) 116, 188, 789, 846
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 521
BspPI GGATC 3 cut(s) 362, 645, 746
BspT104I TTCGAA 1 cut(s) 653
BspTNI GGTCTC 1 cut(s) 582
BsrFI RCCGGY 2 cut(s) 8, 662
BsrI ACTGG 3 cut(s) 545, 578, 759
BssAI RCCGGY 2 cut(s) 8, 662
BssECI CCNNGG 3 cut(s) 191, 632, 772
BssMI GATC 5 cut(s) 367, 615, 637, 685, 738
BssT1I CCWWGG 2 cut(s) 632, 772
Bst2UI CCWGG 2 cut(s) 110, 192
Bst4CI ACNGT 4 cut(s) 211, 440, 595, 752
Bst6I CTCTTC 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 3 cut(s) 10, 186, 664
BstDEI CTNAG 3 cut(s) 22, 104, 199
BstF5I GGATG 1 cut(s) 432
BstFNI CGCG 4 cut(s) 116, 188, 789, 846
BstHHI GCGC 2 cut(s) 190, 848
BstKTI GATC 5 cut(s) 370, 618, 640, 688, 741
BstMAI GTCTC 2 cut(s) 582, 601
BstMBI GATC 5 cut(s) 367, 615, 637, 685, 738
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNI CCWGG 2 cut(s) 110, 192
BstPAI GACNNNNGTC 1 cut(s) 66
BstSCI CCNGG 3 cut(s) 108, 190, 874
BstSFI CTRYAG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 4 cut(s) 116, 188, 789, 846
BstV1I GCAGC 2 cut(s) 4, 531
BstV2I GAAGAC 3 cut(s) 45, 62, 620
BsuRI GGCC 3 cut(s) 8, 569, 644
BtsCI GGATG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 10, 186, 664
CaiI CAGNNNCTG 1 cut(s) 525
CciI TCATGA 1 cut(s) 703
CfoI GCGC 2 cut(s) 190, 848
Cfr10I RCCGGY 2 cut(s) 8, 662
CseI GACGC 2 cut(s) 56, 122
Csp6I GTAC 3 cut(s) 207, 298, 722
CviAII CATG 3 cut(s) 172, 672, 704
CviQI GTAC 3 cut(s) 207, 298, 722
DdeI CTNAG 3 cut(s) 22, 104, 199
DpnI GATC 5 cut(s) 369, 617, 639, 687, 740
DpnII GATC 5 cut(s) 367, 615, 637, 685, 738
DraIII CACNNNGTG 1 cut(s) 554
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco130I CCWWGG 2 cut(s) 632, 772
Eco147I AGGCCT 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 818
Eco31I GGTCTC 1 cut(s) 582
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 108, 190
EcoT14I CCWWGG 2 cut(s) 632, 772
EcoT38I GRGCYC 1 cut(s) 818
ErhI CCWWGG 2 cut(s) 632, 772
FaeI CATG 3 cut(s) 175, 675, 707
FaqI GGGAC 2 cut(s) 426, 764
FatI CATG 3 cut(s) 171, 671, 703
FauI CCCGC 3 cut(s) 121, 789, 851
Fnu4HI GCNGC 2 cut(s) 18, 520
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 818
Fsp4HI GCNGC 2 cut(s) 18, 520
FspBI CTAG 1 cut(s) 895
GlaI GCGC 2 cut(s) 189, 847
GluI GCNGC 2 cut(s) 18, 520
HaeIII GGCC 3 cut(s) 8, 569, 644
HapII CCGG 3 cut(s) 9, 663, 876
HgaI GACGC 2 cut(s) 56, 122
HhaI GCGC 2 cut(s) 190, 848
Hin1II CATG 3 cut(s) 175, 675, 707
Hin6I GCGC 2 cut(s) 188, 846
HinP1I GCGC 2 cut(s) 188, 846
HinfI GANTC 2 cut(s) 132, 292
HpaII CCGG 3 cut(s) 9, 663, 876
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 2 cut(s) 805, 813
Hpy188III TCNNGA 4 cut(s) 403, 526, 704, 860
Hpy8I GTNNAC 1 cut(s) 300
Hpy99I CGWCG 1 cut(s) 467
HpyCH4III ACNGT 4 cut(s) 211, 440, 595, 752
HpyCH4IV ACGT 2 cut(s) 163, 462
HpyCH4V TGCA 3 cut(s) 519, 799, 836
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 3 cut(s) 22, 104, 199
HpySE526I ACGT 2 cut(s) 163, 462
Hsp92II CATG 3 cut(s) 175, 675, 707
HspAI GCGC 2 cut(s) 188, 846
KroI GCCGGC 2 cut(s) 8, 662
KroNI GCCGGC 2 cut(s) 10, 664
Kzo9I GATC 5 cut(s) 367, 615, 637, 685, 738
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 2 cut(s) 4, 531
LweI GCATC 1 cut(s) 479
MaeI CTAG 1 cut(s) 895
MaeII ACGT 2 cut(s) 163, 462
MaeIII GTNAC 2 cut(s) 211, 752
MalI GATC 5 cut(s) 369, 617, 639, 687, 740
MboI GATC 5 cut(s) 367, 615, 637, 685, 738
MboII GAAGA 5 cut(s) 50, 62, 222, 276, 620
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 2 cut(s) 246, 818
MluCI AATT 7 cut(s) 28, 74, 118, 350, 396, 474, 667
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 5 cut(s) 31, 80, 246, 501, 501
MroNI GCCGGC 2 cut(s) 8, 662
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 867
MslI CAYNNNNRTG 3 cut(s) 176, 312, 790
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 3 cut(s) 9, 663, 876
MspR9I CCNGG 3 cut(s) 110, 192, 876
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 2 cut(s) 110, 192
MvnI CGCG 4 cut(s) 116, 188, 789, 846
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NaeI GCCGGC 2 cut(s) 10, 664
NciI CCSGG 1 cut(s) 876
NdeII GATC 5 cut(s) 367, 615, 637, 685, 738
NgoMIV GCCGGC 2 cut(s) 8, 662
NlaIII CATG 3 cut(s) 175, 675, 707
NlaIV GGNNCC 1 cut(s) 407
NmuCI GTSAC 2 cut(s) 211, 752
NspV TTCGAA 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 790
PagI TCATGA 1 cut(s) 703
PceI AGGCCT 1 cut(s) 644
PctI GAATGC 1 cut(s) 535
PdiI GCCGGC 2 cut(s) 10, 664
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 2 cut(s) 19, 521
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PshAI GACNNNNGTC 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 108, 190
PspGI CCWGG 2 cut(s) 108, 190
PspN4I GGNNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 521
PstNI CAGNNNCTG 1 cut(s) 525
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 208, 299, 723
RsaNI GTAC 3 cut(s) 207, 298, 722
RseI CAYNNNNRTG 3 cut(s) 176, 312, 790
SaqAI TTAA 1 cut(s) 867
SatI GCNGC 2 cut(s) 18, 520
Sau3AI GATC 5 cut(s) 367, 615, 637, 685, 738
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 110, 192, 876
SduI GDGCHC 2 cut(s) 246, 818
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 1 cut(s) 517
SfuI TTCGAA 1 cut(s) 653
SmiMI CAYNNNNRTG 3 cut(s) 176, 312, 790
SmlI CTYRAG 2 cut(s) 237, 579
SmoI CTYRAG 2 cut(s) 237, 579
Sse9I AATT 7 cut(s) 28, 74, 118, 350, 396, 474, 667
SseBI AGGCCT 1 cut(s) 644
SsiI CCGC 3 cut(s) 128, 782, 844
SspI AATATT 1 cut(s) 682
SspMI CTAG 1 cut(s) 895
StuI AGGCCT 1 cut(s) 644
StyD4I CCNGG 3 cut(s) 108, 190, 874
StyI CCWWGG 2 cut(s) 632, 772
TaaI ACNGT 4 cut(s) 211, 440, 595, 752
TaiI ACGT 2 cut(s) 166, 465
TaqI TCGA 4 cut(s) 168, 465, 653, 715
TasI AATT 7 cut(s) 28, 74, 118, 350, 396, 474, 667
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 867
Tru9I TTAA 1 cut(s) 867
TseFI GTSAC 2 cut(s) 211, 752
TseI GCWGC 2 cut(s) 17, 519
Tsp45I GTSAC 2 cut(s) 211, 752
TspDTI ATGAA 3 cut(s) 194, 344, 660
TspGWI ACGGA 1 cut(s) 285
XapI RAATTY 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.