Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Forward (+)

30204372 .. 30205958

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTCTCGACGGCCTCTGCTAGAAATTTCTATCAAGACTTTCACATTTTATTCGGCGAACAACGTGCACAAATACTCGACGGAGGACAACTTCTCACCCTCTCCCAGGACCAGACTTCCGGCTCCGGCTTCATTTCTCAGAACCAATACCTATTTGGACGGTTTGACATGCAAATGAAGCTAGCCCCCGGGAACACTGCTGGTACTGTCACCACGTTTTATTTATCATCTTCAGGGAACCATCATGATGAGATTGACTTGGAGTTTCTTGGAAACACTTCCGGGAATCCTTACACTCTCAGTACTAATATCTACACTCAGGGAATAGGGGGCAGGGAACAACAGTTCCATCTTTGGTTTGATCCCTCCGAAGACTTCCACACCTATTCTGTCGTTTGGAATATCCATCGCATTATAATCTTTGTGGATAACAGTCCCATTAGGGTTTTCAACAACCTGGAACTACTTCATGTTCCGTATCCTTCGAGCCAGCCCATGACGATTTACGCCAGTTTCTGGGATGGCGATAGCTGGGCTACACAAGGTGGGAGTGTGAAGACTGACTGGACTCAAGCTCCTTTCACTGCCTCTTATGGAAGATACAGCATCAATGCTTGTCTAGGATCAGACCACCAAGGCTTATCATCATACCCGTACTCATACTCAGACTGTGTTCCAACCTCCACGAATATGTCAAATGTCGATAATTCATGGAGAAACCTAGGGCTTGATGCTGCAGGTCGAAACAGGCTTCGATGGGTTCAAACGAAGTACATGGTCTACAATTACTGTGCTGACCGTAATAAGTTCCCCGGTGGTCTGCCACGGGAATGCAAGCATTCCAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

284

Amino Acids

32.0

Weight (kDa)

5.95

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	11 - 190	2.8e-60	Glycosyl hydrolases family 16
XET_C	PF06955	236 - 278	6e-18	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	780
AclWI	GGATC	2 cut(s)	356, 631
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	4 cut(s)	205, 304, 656, 773
AfiI	CCNNNNNNNGG	2 cut(s)	106, 516
AgsI	TTSAA	2 cut(s)	451, 764
AjnI	CCWGG	2 cut(s)	105, 456
AloI	GAACNNNNNNTCC	4 cut(s)	329, 330, 361, 362
AluBI	AGCT	3 cut(s)	181, 531, 575
AluI	AGCT	3 cut(s)	181, 531, 575
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	10
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	356, 631
AlwNI	CAGNNNCTG	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	25
Asp700I	GAANNNNTTC	2 cut(s)	277, 465
AspA2I	CCTAGG	1 cut(s)	721
AspS9I	GGNCC	1 cut(s)	109
AsuC2I	CCSGG	4 cut(s)	189, 190, 283, 813
AsuHPI	GGTGA	2 cut(s)	88, 202
AsuNHI	GCTAGC	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	109
AvrII	CCTAGG	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	70
BbsI	GAAGAC	2 cut(s)	378, 563
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	5 cut(s)	249, 357, 414, 515, 750
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	2 cut(s)	107, 458
BciVI	GTATCC	1 cut(s)	489
BcnI	CCSGG	4 cut(s)	189, 190, 283, 813
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	5 cut(s)	21, 182, 620, 722, 850
BfmI	CTRYAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	1 cut(s)	735
BlnI	CCTAGG	1 cut(s)	721
BlsI	GCNGC	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	6 cut(s)	107, 189, 190, 283, 458, 813
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	124, 239
BmrFI	CCNGG	6 cut(s)	107, 189, 190, 283, 458, 813
BmsI	GCATC	2 cut(s)	615, 721
BmtI	GCTAGC	1 cut(s)	185
BpiI	GAAGAC	2 cut(s)	378, 563
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	4 cut(s)	189, 190, 283, 813
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	7 cut(s)	105, 187, 188, 634, 721, 811, 824
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 516
Bse1I	ACTGG	2 cut(s)	510, 569
BseBI	CCWGG	2 cut(s)	107, 458
BseDI	CCNNGG	7 cut(s)	105, 187, 188, 634, 721, 811, 824
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	106, 516
BseMII	CTCAG	4 cut(s)	152, 313, 332, 678
BseNI	ACTGG	2 cut(s)	510, 569
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	1 cut(s)	531
BshFI	GGCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	120, 126, 189, 282, 813
BslFI	GGGAC	1 cut(s)	420
BslI	CCNNNNNNNGG	2 cut(s)	106, 516
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	2 cut(s)	836, 838
BsnI	GGCC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	361, 623
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	4 cut(s)	151, 312, 331, 677
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	124, 239
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	728
BspOI	GCTAGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	356, 631
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	510, 569
BssECI	CCNNGG	7 cut(s)	105, 187, 188, 634, 721, 811, 824
BssMI	GATC	2 cut(s)	361, 623
BssT1I	CCWWGG	2 cut(s)	634, 721
Bst2UI	CCWGG	2 cut(s)	107, 458
Bst4CI	ACNGT	7 cut(s)	162, 208, 345, 434, 671, 791, 800
BstC8I	GCNNGC	3 cut(s)	183, 491, 836
BstDEI	CTNAG	4 cut(s)	138, 299, 318, 664
BstDSI	CCRYGG	1 cut(s)	824
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	2 cut(s)	364, 626
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	2 cut(s)	361, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	107, 458
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	6 cut(s)	105, 187, 188, 281, 456, 811
BstSFI	CTRYAG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	2 cut(s)	378, 563
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	824
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	2 cut(s)	195, 582
BtsIMutI	CAGTG	2 cut(s)	195, 582
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	3 cut(s)	183, 491, 836
CaiI	CAGNNNCTG	1 cut(s)	516
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	109
Cfr9I	CCCGGG	1 cut(s)	188
Csp6I	GTAC	4 cut(s)	204, 303, 655, 772
CviAII	CATG	6 cut(s)	169, 245, 470, 496, 711, 775
CviQI	GTAC	4 cut(s)	204, 303, 655, 772
DdeI	CTNAG	4 cut(s)	138, 299, 318, 664
DpnI	GATC	2 cut(s)	363, 625
DpnII	GATC	2 cut(s)	361, 623
DraIII	CACNNNGTG	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	634, 721
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	105, 456
EcoT14I	CCWWGG	2 cut(s)	634, 721
ErhI	CCWWGG	2 cut(s)	634, 721
FaeI	CATG	6 cut(s)	172, 248, 473, 499, 714, 778
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	6 cut(s)	168, 244, 469, 495, 710, 774
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	1 cut(s)	735
FspBI	CTAG	5 cut(s)	21, 182, 620, 722, 850
GluI	GCNGC	1 cut(s)	735
GsaI	CCCAGC	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	5 cut(s)	120, 126, 189, 282, 813
Hin1II	CATG	6 cut(s)	172, 248, 473, 499, 714, 778
HinfI	GANTC	2 cut(s)	286, 568
HpaII	CCGG	5 cut(s)	120, 126, 189, 282, 813
HphI	GGTGA	2 cut(s)	88, 202
Hpy166II	GTNNAC	2 cut(s)	68, 781
Hpy188I	TCNGA	4 cut(s)	141, 370, 628, 667
Hpy188III	TCNNGA	3 cut(s)	7, 35, 245
Hpy8I	GTNNAC	2 cut(s)	68, 781
Hpy99I	CGWCG	2 cut(s)	13, 83
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	7 cut(s)	162, 208, 345, 434, 671, 791, 800
HpyCH4IV	ACGT	2 cut(s)	64, 215
HpyCH4V	TGCA	4 cut(s)	68, 172, 737, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	4 cut(s)	138, 299, 318, 664
HpySE526I	ACGT	2 cut(s)	64, 215
Hsp92II	CATG	6 cut(s)	172, 248, 473, 499, 714, 778
Kzo9I	GATC	2 cut(s)	361, 623
LmnI	GCTCC	2 cut(s)	128, 580
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	2 cut(s)	615, 721
MaeI	CTAG	5 cut(s)	21, 182, 620, 722, 850
MaeII	ACGT	2 cut(s)	64, 215
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	363, 625
MboI	GATC	2 cut(s)	361, 623
MboII	GAAGA	4 cut(s)	222, 383, 568, 609
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	25, 706, 784
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	1 cut(s)	701
MnlI	CCTC	6 cut(s)	25, 77, 110, 376, 598, 691
MroXI	GAANNNNTTC	2 cut(s)	277, 465
MslI	CAYNNNNRTG	4 cut(s)	173, 246, 689, 829
MspI	CCGG	5 cut(s)	120, 126, 189, 282, 813
MspR9I	CCNGG	6 cut(s)	107, 189, 190, 283, 458, 813
Mva1269I	GAATGC	2 cut(s)	836, 838
MvaI	CCWGG	2 cut(s)	107, 458
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	4 cut(s)	189, 190, 283, 813
NdeII	GATC	2 cut(s)	361, 623
NheI	GCTAGC	1 cut(s)	181
NlaIII	CATG	6 cut(s)	172, 248, 473, 499, 714, 778
NlaIV	GGNNCC	2 cut(s)	124, 239
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	172
PagI	TCATGA	1 cut(s)	244
PctI	GAATGC	2 cut(s)	836, 838
PdmI	GAANNNNTTC	2 cut(s)	277, 465
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	516
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	736
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PsiI	TTATAA	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	105, 456
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	105, 456
PspN4I	GGNNCC	2 cut(s)	124, 239
PspPI	GGNCC	1 cut(s)	109
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	516
RsaI	GTAC	4 cut(s)	205, 304, 656, 773
RsaNI	GTAC	4 cut(s)	204, 303, 655, 772
RseI	CAYNNNNRTG	4 cut(s)	173, 246, 689, 829
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	2 cut(s)	361, 623
Sau96I	GGNCC	1 cut(s)	109
ScaI	AGTACT	1 cut(s)	304
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	6 cut(s)	107, 189, 190, 283, 458, 813
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	2 cut(s)	615, 721
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	109
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	4 cut(s)	173, 246, 689, 829
SmlI	CTYRAG	1 cut(s)	570
SmoI	CTYRAG	1 cut(s)	570
Sse9I	AATT	3 cut(s)	25, 706, 784
SspMI	CTAG	5 cut(s)	21, 182, 620, 722, 850
StyD4I	CCNGG	6 cut(s)	105, 187, 188, 281, 456, 811
StyI	CCWWGG	2 cut(s)	634, 721
TaaI	ACNGT	7 cut(s)	162, 208, 345, 434, 671, 791, 800
TaiI	ACGT	2 cut(s)	67, 218
TaqI	TCGA	6 cut(s)	8, 78, 485, 702, 742, 754
TasI	AATT	3 cut(s)	25, 706, 784
TatI	WGTACW	2 cut(s)	302, 771
TfiI	GAWTC	1 cut(s)	286
TscAI	CASTG	2 cut(s)	202, 589
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	121, 191, 458, 699
TspGWI	ACGGA	2 cut(s)	96, 465
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	2 cut(s)	202, 589
Van91I	CCANNNNNTGG	1 cut(s)	516
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	109
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmaI	CCCGGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	2 cut(s)	277, 465
XspI	CTAG	5 cut(s)	21, 182, 620, 722, 850
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.