pycom09g07220

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
5419143 .. 5420240
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07220.3

Sequence Viewer

Length: 861 bp
ATGGTGTTTCTTCTTTCTCTGTTCACAACTTCTCTAATGGCCATGACTGCCTCAGCTGGTAATTTCTTTCAAGACTTTGACATTACATTTGGCGACGGACGTGCCAAGATACTCAACGGAGGACAGCTTCTCACACTCAACCTTGATAAGGCCTCTGGGTCTGGCTTCAAGTCCAAGAATGAGTACTTATTTGGAAGGATTGACATGCAGATCAAGCTCGTCTCCGGCAACTCAGCTGGAACCGTTACTGCCTACTATTTATCTTCTGAAGGTCCAACCCATGACGAGATTGATTTCGAGTTTTTGGGCAACTCAACTGGTGAACCCTACACTCTCCATACCAATGTCTTCAGCCAAGGAAAAGGGAACAGAGAACAACAATTCCAGCTTTGGTTTGACCCCACAAAAACCTTCCACACATACTCCATTGTTTGGAACTCGCAGCGCATTATATTCTTGGTGGATAACATTCCAATCAGAGTGTTCAACAACTTGGAATCAGCTGGAGTCCCATTCCCTAAAAACCAGCCCATGAGGATTTATTCAAGTTTGTGGAATGCAGATGACTGGGCAACAAGAGGTGGCCTTGTCAAGACTGACTGGACTCAAGCTCCTTTCACCGCCTCTTACAGAAACTTCAAGGCCAATGCTTGTACTGCTAGCTCACCATCCTCCTGTGCCTCCACTACATCTACTAATTCATTGACAGAGCAGAGTGCATGGAAAACTCAGGGGCTTGATGCCGCAGGCCGAAACAGGCTTCGTTGGGTGCAACAGAAGTTCATGGTTTACAACTACTGCTCTGATCTTAAACGCTTCCCACAAGGCCTCCCAGCTGAATGCAAGCGATCGAGGTTCTAG

Protein Analysis

287

Amino Acids

32.09

Weight (kDa)

8.99

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 432
AciI CCGC 2 cut(s) 621, 744
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 288, 334
AfaI GTAC 2 cut(s) 185, 655
AfiI CCNNNNNNNGG 2 cut(s) 148, 432
AgsI TTSAA 5 cut(s) 71, 169, 487, 546, 640
AjiI CACGTC 1 cut(s) 101
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 9 cut(s) 56, 127, 217, 236, 388, 503, 611, 663, 836
AluI AGCT 9 cut(s) 56, 127, 217, 236, 388, 503, 611, 663, 836
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 6 cut(s) 39, 150, 583, 642, 748, 826
ApeKI GCWGC 1 cut(s) 442
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 332, 610, 657
AsuNHI GCTAGC 1 cut(s) 659
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 454
BccI CCATC 1 cut(s) 676
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 660, 859
BisI GCNGC 2 cut(s) 443, 744
BlsI GCNGC 2 cut(s) 444, 745
BmcAI AGTACT 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 1 cut(s) 730
BmtI GCTAGC 1 cut(s) 663
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 525
Bpu10I CCTNAGC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 355
BsaXI ACNNNNNCTCC 6 cut(s) 407, 437, 595, 625, 813, 843
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 432
Bse1I ACTGG 3 cut(s) 322, 572, 605
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 2 cut(s) 148, 432
BseMII CTCAG 3 cut(s) 66, 246, 743
BseNI ACTGG 3 cut(s) 322, 572, 605
BseXI GCAGC 1 cut(s) 454
BseYI CCCAGC 1 cut(s) 832
Bsh1285I CGRYCG 1 cut(s) 851
BshFI GGCC 6 cut(s) 41, 152, 585, 644, 750, 828
BsiEI CGRYCG 1 cut(s) 851
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 148, 432
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 2 cut(s) 562, 845
BsnI GGCC 6 cut(s) 41, 152, 585, 644, 750, 828
Bsp143I GATC 3 cut(s) 210, 805, 848
BspACI CCGC 2 cut(s) 621, 744
BspANI GGCC 6 cut(s) 41, 152, 585, 644, 750, 828
BspCNI CTCAG 3 cut(s) 65, 245, 742
BspLI GGNNCC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 663
BsrI ACTGG 3 cut(s) 322, 572, 605
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 210, 805, 848
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 1 cut(s) 244
BstC8I GCNNGC 3 cut(s) 661, 748, 845
BstDEI CTNAG 3 cut(s) 52, 232, 729
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 668
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 213, 808, 851
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 210, 805, 848
BstMCI CGRYCG 1 cut(s) 851
BstMWI GCNNNNNNNGC 3 cut(s) 47, 214, 656
BstNSI RCATGY 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 340
BsuRI GGCC 6 cut(s) 41, 152, 585, 644, 750, 828
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 668
Cac8I GCNNGC 3 cut(s) 661, 748, 845
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 184, 654
CviAII CATG 6 cut(s) 43, 205, 281, 532, 720, 784
CviQI GTAC 2 cut(s) 184, 654
DdeI CTNAG 3 cut(s) 52, 232, 729
DpnI GATC 3 cut(s) 212, 807, 850
DpnII GATC 3 cut(s) 210, 805, 848
EaeI YGGCCR 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 355
Eco147I AGGCCT 2 cut(s) 152, 828
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 2 cut(s) 288, 334
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 6 cut(s) 46, 208, 284, 535, 723, 787
FaiI YATR 9 cut(s) 44, 206, 282, 339, 421, 452, 533, 721, 785
FaqI GGGAC 1 cut(s) 494
FatI CATG 6 cut(s) 42, 204, 280, 531, 719, 783
Fnu4HI GCNGC 2 cut(s) 443, 744
FokI GGATG 1 cut(s) 655
Fsp4HI GCNGC 2 cut(s) 443, 744
FspBI CTAG 2 cut(s) 660, 859
GlaI GCGC 1 cut(s) 446
GluI GCNGC 2 cut(s) 443, 744
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 1 cut(s) 525
HaeIII GGCC 6 cut(s) 41, 152, 585, 644, 750, 828
HapII CCGG 1 cut(s) 225
HhaI GCGC 1 cut(s) 447
Hin1II CATG 6 cut(s) 46, 208, 284, 535, 723, 787
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HinfI GANTC 3 cut(s) 497, 507, 604
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 332, 610, 657
Hpy166II GTNNAC 3 cut(s) 24, 323, 790
Hpy188I TCNGA 3 cut(s) 268, 479, 805
Hpy188III TCNNGA 2 cut(s) 71, 592
Hpy8I GTNNAC 3 cut(s) 24, 323, 790
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 189, 263, 421
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 5 cut(s) 208, 560, 719, 772, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 214, 656
HpyF3I CTNAG 3 cut(s) 52, 232, 729
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 6 cut(s) 46, 208, 284, 535, 723, 787
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 210, 805, 848
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 1 cut(s) 730
MaeI CTAG 2 cut(s) 660, 859
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 244
MalI GATC 3 cut(s) 212, 807, 850
MboI GATC 3 cut(s) 210, 805, 848
MboII GAAGA 2 cut(s) 255, 340
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 61, 380, 697
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 516, 598
MmeI TCCRAC 1 cut(s) 299
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 810
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 4 cut(s) 56, 236, 503, 836
MspI CCGG 1 cut(s) 225
Mva1269I GAATGC 2 cut(s) 562, 845
MwoI GCNNNNNNNGC 3 cut(s) 47, 214, 656
NdeII GATC 3 cut(s) 210, 805, 848
NheI GCTAGC 1 cut(s) 659
NlaIII CATG 6 cut(s) 46, 208, 284, 535, 723, 787
NlaIV GGNNCC 1 cut(s) 241
NspI RCATGY 1 cut(s) 208
PceI AGGCCT 2 cut(s) 152, 828
PctI GAATGC 2 cut(s) 562, 845
PfeI GAWTC 1 cut(s) 497
PflMI CCANNNNNTGG 1 cut(s) 432
PkrI GCNGC 2 cut(s) 444, 745
Ple19I CGATCG 1 cut(s) 851
PleI GAGTC 2 cut(s) 515, 598
PpsI GAGTC 2 cut(s) 515, 598
PspFI CCCAGC 1 cut(s) 832
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 272
PvuI CGATCG 1 cut(s) 851
PvuII CAGCTG 4 cut(s) 56, 236, 503, 836
RsaI GTAC 2 cut(s) 185, 655
RsaNI GTAC 2 cut(s) 184, 654
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 443, 744
Sau3AI GATC 3 cut(s) 210, 805, 848
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 1 cut(s) 185
SchI GAGTC 2 cut(s) 516, 598
SfaNI GCATC 1 cut(s) 730
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse9I AATT 3 cut(s) 61, 380, 697
SseBI AGGCCT 2 cut(s) 152, 828
SsiI CCGC 2 cut(s) 621, 744
SspMI CTAG 2 cut(s) 660, 859
StuI AGGCCT 2 cut(s) 152, 828
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 297, 851
TasI AATT 3 cut(s) 61, 380, 697
TatI WGTACW 2 cut(s) 183, 653
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 1 cut(s) 497
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TseI GCWGC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 690, 772
TspGWI ACGGA 2 cut(s) 111, 132
Van91I CCANNNNNTGG 1 cut(s) 432
VpaK11BI GGWCC 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 146
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 660, 859
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.