Rorug02G0430600

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
55244536 .. 55247530
2995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0430600.1

Sequence Viewer

Length: 1092 bp
ATGAGTTCCTATGGATGTGGCTTCAATGGCAATGACCGCAATCTCGATTCCGAACGAAGAGATCCTGGTCTTACTGCTCAGAAGCAGAATAAGGATCGTGTCTTCATAAGAAAGCCTTCCCTCACAACCAAGATCGTGAGGCGCATACAGGCCCAGCATAAGCAGTTGGAGAAGAAATTTTTCAAGGACAGAGCTGCACTGGTAGACAAATACCATCAGCTCTACAAACCTCTGTACGAAAAGAGATATGAAATTGTTAATGGTATATCTGAAGTCGGAGTAAAAACTCAAGAACTGTTAGAAGATGAATTGAGATATGAAATTGTTAATGGTATATCTGAAGTCGGAGTAAAAACTCAAGAACTGTTAGAAGATGACGAAGCCAATGGAGAGAAAGGAGTGCCTAACTTTTGGTTGTCTGCGCTGAAGAATAATAAGAAACTTTTGATTATGAACCATGACGAACGCGCTCTCCAGTATCTGAACGATATCAAGTGGTCCAGGATACATGATCCTAAGGGATTCAGGCTGGAATTCTTATTTGATCCTAATCCTTACTTTCGAAACTCCGTCCTGACAAAAACATATTACATGGTTGAAGAACATGAACCGATATGGAGCAAGGAAATCGGGACGGAGATTGATTGGTATCCCGGGCAATGCTTGACAATCAATCCAAGAAAGGATCCAAAGAGTGCCAAGTCTTTGAGTACTCCAGCTGATATTTGTTCCAGCTTCTTTACGTTTTTCAAACTTCCCCAGCTTGATGATTATACTGGTGCAGATATGGTTTCTATGTTCAAGACTAGGATAGAAAACGACCGTGAAATGGTCTTAACAATTCGAGACAAGATCATCCCTCACGCAGTGTCATGGTTCGCTGTTAATATAGACGAGCTTGATGATAGTGAAGACGACGATGACAGTGACTATCATTTTGACTTTGATAGTGATGATGAAGATGACACGTACAAGAAGTATGCTGCTGCTTATAACAACAACAAAGAAGAGGAAGATCGCAAAAGAAAGAGAGAGAGTGACTGGACTAATGCTGAGAGAGCAATGGCTAGGCTAACGCTGCGAGAGCAGTAA

Protein Analysis

363

Amino Acids

42.73

Weight (kDa)

5.22

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAP PF00956 45 - 294 1.2e-60 Nucleosome assembly protein (NAP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 468
AciI CCGC 1 cut(s) 37
AclWI GGATC 6 cut(s) 56, 102, 506, 539, 680, 693
AcsI RAATTY 2 cut(s) 176, 533
AcuI CTGAAG 3 cut(s) 291, 360, 446
AdeI CACNNNGTG 1 cut(s) 868
AfaI GTAC 3 cut(s) 236, 712, 971
AfiI CCNNNNNNNGG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 966
AgsI TTSAA 5 cut(s) 25, 184, 599, 751, 802
AjnI CCWGG 2 cut(s) 64, 500
AloI GAACNNNNNNTCC 2 cut(s) 456, 488
AluBI AGCT 6 cut(s) 194, 220, 719, 735, 763, 898
AluI AGCT 6 cut(s) 194, 220, 719, 735, 763, 898
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 6 cut(s) 56, 102, 506, 539, 680, 693
AlwNI CAGNNNCTG 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 653
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 4 cut(s) 194, 983, 986, 1078
ApoI RAATTY 2 cut(s) 176, 533
ArsI GACNNNNNNTTYG 2 cut(s) 920, 952
Asp700I GAANNNNTTC 2 cut(s) 115, 179
AspLEI GCGC 3 cut(s) 144, 424, 470
AspS9I GGNCC 2 cut(s) 151, 498
AsuC2I CCSGG 2 cut(s) 654, 655
AsuII TTCGAA 1 cut(s) 562
AvaI CYCGRG 1 cut(s) 653
AvaII GGWCC 1 cut(s) 498
AxyI CCTNAGG 1 cut(s) 516
BamHI GGATCC 1 cut(s) 685
BbsI GAAGAC 2 cut(s) 94, 918
BbvI GCAGC 4 cut(s) 181, 970, 973, 1065
BccI CCATC 1 cut(s) 222
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BciT130I CCWGG 2 cut(s) 66, 502
BciVI GTATCC 2 cut(s) 498, 660
BcnI CCSGG 2 cut(s) 654, 655
BcoDI GTCTC 1 cut(s) 840
BfaI CTAG 2 cut(s) 807, 1068
BfuI GTATCC 2 cut(s) 498, 660
BisI GCNGC 4 cut(s) 195, 984, 987, 1079
BlsI GCNGC 4 cut(s) 196, 985, 988, 1080
BmcAI AGTACT 1 cut(s) 712
Bme1390I CCNGG 4 cut(s) 66, 502, 654, 655
Bme18I GGWCC 1 cut(s) 498
BmeT110I CYCGRG 1 cut(s) 653
BmgT120I GGNCC 2 cut(s) 151, 498
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 4 cut(s) 66, 502, 654, 655
BpiI GAAGAC 2 cut(s) 94, 918
BpmI CTGGAG 2 cut(s) 458, 699
Bpu14I TTCGAA 1 cut(s) 562
BpuEI CTTGAG 2 cut(s) 273, 342
BpuMI CCSGG 2 cut(s) 654, 655
BsaAI YACGTR 1 cut(s) 969
BsaBI GATNNNNATC 2 cut(s) 549, 648
BsaJI CCNNGG 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 1 cut(s) 829
Bse1I ACTGG 4 cut(s) 204, 475, 781, 1046
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 3 cut(s) 37, 665, 1068
Bse8I GATNNNNATC 2 cut(s) 549, 648
BseBI CCWGG 2 cut(s) 66, 502
BseDI CCNNGG 1 cut(s) 653
BseGI GGATG 2 cut(s) 20, 855
BseJI GATNNNNATC 2 cut(s) 549, 648
BseLI CCNNNNNNNGG 1 cut(s) 829
BseMI GCAATG 3 cut(s) 37, 665, 1068
BseMII CTCAG 2 cut(s) 92, 1044
BseNI ACTGG 4 cut(s) 204, 475, 781, 1046
BseXI GCAGC 4 cut(s) 181, 970, 973, 1065
BseYI CCCAGC 2 cut(s) 153, 759
BsgI GTGCAG 2 cut(s) 180, 801
Bsh1236I CGCG 1 cut(s) 468
Bsh1285I CGRYCG 1 cut(s) 823
BshFI GGCC 1 cut(s) 152
BsiEI CGRYCG 1 cut(s) 823
BsiHKCI CYCGRG 1 cut(s) 653
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 1 cut(s) 829
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 653
Bsp119I TTCGAA 1 cut(s) 562
Bsp143I GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
BspACI CCGC 1 cut(s) 37
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 2 cut(s) 91, 1045
BspFNI CGCG 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 6 cut(s) 56, 102, 506, 539, 680, 693
BspT104I TTCGAA 1 cut(s) 562
BsrDI GCAATG 3 cut(s) 37, 665, 1068
BsrI ACTGG 4 cut(s) 204, 475, 781, 1046
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
Bst2UI CCWGG 2 cut(s) 66, 502
Bst4CI ACNGT 4 cut(s) 297, 366, 824, 926
Bst6I CTCTTC 2 cut(s) 52, 1002
BstBAI YACGTR 1 cut(s) 969
BstBI TTCGAA 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 78, 516, 1053
BstF5I GGATG 2 cut(s) 20, 855
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 3 cut(s) 144, 424, 470
BstKTI GATC 8 cut(s) 64, 97, 135, 514, 547, 688, 855, 1018
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
BstMCI CGRYCG 1 cut(s) 823
BstMWI GCNNNNNNNGC 5 cut(s) 27, 36, 1058, 1078, 1084
BstNI CCWGG 2 cut(s) 66, 502
BstSCI CCNGG 4 cut(s) 64, 500, 652, 653
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 4 cut(s) 181, 970, 973, 1065
BstV2I GAAGAC 2 cut(s) 94, 918
BstX2I RGATCY 2 cut(s) 61, 685
BstYI RGATCY 2 cut(s) 61, 685
Bsu36I CCTNAGG 1 cut(s) 516
BsuI GTATCC 2 cut(s) 498, 660
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 2 cut(s) 20, 855
BtsI GCAGTG 1 cut(s) 873
BtsIMutI CAGTG 3 cut(s) 197, 873, 931
CaiI CAGNNNCTG 1 cut(s) 481
CfoI GCGC 3 cut(s) 144, 424, 470
Cfr13I GGNCC 2 cut(s) 151, 498
Cfr9I CCCGGG 1 cut(s) 653
Csp6I GTAC 3 cut(s) 235, 711, 970
CviAII CATG 5 cut(s) 458, 509, 592, 605, 873
CviQI GTAC 3 cut(s) 235, 711, 970
DdeI CTNAG 3 cut(s) 78, 516, 1053
DpnI GATC 8 cut(s) 63, 96, 134, 513, 546, 687, 854, 1017
DpnII GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
DraIII CACNNNGTG 1 cut(s) 868
Eam1104I CTCTTC 2 cut(s) 52, 1002
EarI CTCTTC 2 cut(s) 52, 1002
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 498
Eco57I CTGAAG 3 cut(s) 291, 360, 446
Eco81I CCTNAGG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 64, 500
EcoRV GATATC 1 cut(s) 490
FaeI CATG 5 cut(s) 461, 512, 595, 608, 876
FalI AAGNNNNNCTT 2 cut(s) 100, 132
FaqI GGGAC 1 cut(s) 646
FatI CATG 5 cut(s) 457, 508, 591, 604, 872
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 195, 984, 987, 1079
FokI GGATG 2 cut(s) 27, 842
Fsp4HI GCNGC 4 cut(s) 195, 984, 987, 1079
FspBI CTAG 2 cut(s) 807, 1068
GlaI GCGC 3 cut(s) 143, 423, 469
GluI GCNGC 4 cut(s) 195, 984, 987, 1079
GsaI CCCAGC 2 cut(s) 157, 763
GsuI CTGGAG 2 cut(s) 458, 699
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 654
HhaI GCGC 3 cut(s) 144, 424, 470
Hin1II CATG 5 cut(s) 461, 512, 595, 608, 876
Hin6I GCGC 3 cut(s) 142, 422, 468
HinP1I GCGC 3 cut(s) 142, 422, 468
HinfI GANTC 2 cut(s) 47, 522
HpaII CCGG 1 cut(s) 654
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 7 cut(s) 52, 81, 271, 278, 340, 347, 483
Hpy188III TCNNGA 8 cut(s) 44, 136, 290, 359, 574, 631, 802, 845
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 920
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 4 cut(s) 297, 366, 824, 926
HpyCH4IV ACGT 2 cut(s) 743, 968
HpyCH4V TGCA 2 cut(s) 197, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 36, 1058, 1078, 1084
HpyF3I CTNAG 3 cut(s) 78, 516, 1053
HpySE526I ACGT 2 cut(s) 743, 968
Hsp92II CATG 5 cut(s) 461, 512, 595, 608, 876
HspAI GCGC 3 cut(s) 142, 422, 468
Kzo9I GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
LmnI GCTCC 1 cut(s) 618
Lsp1109I GCAGC 4 cut(s) 181, 970, 973, 1065
MaeI CTAG 2 cut(s) 807, 1068
MaeII ACGT 2 cut(s) 743, 968
MaeIII GTNAC 2 cut(s) 926, 1037
MalI GATC 8 cut(s) 63, 96, 134, 513, 546, 687, 854, 1017
MboI GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
MflI RGATCY 2 cut(s) 61, 685
MluCI AATT 6 cut(s) 176, 252, 308, 321, 533, 840
MmeI TCCRAC 3 cut(s) 147, 256, 325
MnlI CCTC 5 cut(s) 131, 132, 240, 870, 1003
MroXI GAANNNNTTC 2 cut(s) 115, 179
MseI TTAA 4 cut(s) 258, 327, 836, 885
MspA1I CMGCKG 1 cut(s) 719
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 4 cut(s) 66, 502, 654, 655
MvaI CCWGG 2 cut(s) 66, 502
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 5 cut(s) 27, 36, 1058, 1078, 1084
NciI CCSGG 2 cut(s) 654, 655
NdeII GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
NlaIII CATG 5 cut(s) 461, 512, 595, 608, 876
NlaIV GGNNCC 1 cut(s) 687
NmuCI GTSAC 2 cut(s) 926, 1037
NspV TTCGAA 1 cut(s) 562
PdmI GAANNNNTTC 2 cut(s) 115, 179
PfeI GAWTC 2 cut(s) 47, 522
PfoI TCCNGGA 1 cut(s) 500
PkrI GCNGC 4 cut(s) 196, 985, 988, 1080
Ppu21I YACGTR 1 cut(s) 969
PsiI TTATAA 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 64, 500
PspFI CCCAGC 2 cut(s) 153, 759
PspGI CCWGG 2 cut(s) 64, 500
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 2 cut(s) 151, 498
PstNI CAGNNNCTG 1 cut(s) 481
PsuI RGATCY 2 cut(s) 61, 685
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 3 cut(s) 236, 712, 971
RsaNI GTAC 3 cut(s) 235, 711, 970
SaqAI TTAA 4 cut(s) 258, 327, 836, 885
SatI GCNGC 4 cut(s) 195, 984, 987, 1079
Sau3AI GATC 8 cut(s) 61, 94, 132, 511, 544, 685, 852, 1015
Sau96I GGNCC 2 cut(s) 151, 498
ScaI AGTACT 1 cut(s) 712
ScrFI CCNGG 4 cut(s) 66, 502, 654, 655
SetI ASST 9 cut(s) 196, 222, 232, 721, 737, 746, 765, 900, 971
SfuI TTCGAA 1 cut(s) 562
SinI GGWCC 1 cut(s) 498
SmaI CCCGGG 1 cut(s) 655
SmlI CTYRAG 2 cut(s) 288, 357
SmoI CTYRAG 2 cut(s) 288, 357
Sse9I AATT 6 cut(s) 176, 252, 308, 321, 533, 840
SsiI CCGC 1 cut(s) 37
SspMI CTAG 2 cut(s) 807, 1068
StyD4I CCNGG 4 cut(s) 64, 500, 652, 653
TaaI ACNGT 4 cut(s) 297, 366, 824, 926
TaiI ACGT 2 cut(s) 746, 971
TaqI TCGA 3 cut(s) 45, 562, 844
TasI AATT 6 cut(s) 176, 252, 308, 321, 533, 840
TatI WGTACW 1 cut(s) 710
TfiI GAWTC 2 cut(s) 47, 522
Tru1I TTAA 4 cut(s) 258, 327, 836, 885
Tru9I TTAA 4 cut(s) 258, 327, 836, 885
TscAI CASTG 3 cut(s) 204, 873, 931
TseFI GTSAC 2 cut(s) 926, 1037
TseI GCWGC 4 cut(s) 194, 983, 986, 1078
Tsp45I GTSAC 2 cut(s) 926, 1037
TspDTI ATGAA 7 cut(s) 94, 264, 321, 333, 467, 621, 972
TspGWI ACGGA 2 cut(s) 559, 650
TspMI CCCGGG 1 cut(s) 653
TspRI CASTG 3 cut(s) 204, 873, 931
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 2 cut(s) 176, 533
XmaI CCCGGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 2 cut(s) 115, 179
XspI CTAG 2 cut(s) 807, 1068
ZrmI AGTACT 1 cut(s) 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.