Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Forward (+)

54667126 .. 54667881

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0425600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGATTTCTGTTGATGCCATGGCTGCTAGACTAGCCTCATCTCTTGTTATCGCTGAGGGAAAGAAACAGGTTGATCTCCAGCCTACACAAGGCCAAGGCTTACGACAATCAGAGGTTTTTATGGTGGGGAAATTGCTCACTGCTCGGGACTTCAAAGTTAGATCCTTTCTAGGGATGTTCTGCAATGCTTGGCAGATCAATGGATCTCTGCAGGTGGAGGAGGCAGAGGGCCAAAGGGTTTTGTTCACTTTGTCTAACCCTACTGACTGGGTTCGTATCTGGAAGGGTGCTCCATGGGGGTACAACCATGCACCGATGGAGCTGGCCTGCTATGACGGCGTGATGCCGGGGGAAAAGGTCCCTCTGACCATGGCATCATACTGGATAATTCTTCAAGGTATTCCTCCTACTTTTAGGTCAGAAAGAGTGATGACTATGATTGGCTACACTCTTGGGGATTTTCAGGAGATTGACAAGATCGGGAAGAAGGTGGGAACTAGGGCTGGGTTCGGTACGGTACCGGACCTTCAAGCGCAAAACCACCTATCGTACCAAAGCTTATTGGTACACAAAATGAGCTACCATTACCGGCCACAAAAGTCGGTATACCAACTTCTCGATATCGGTTGGTTGGGCCTCCAACCGAGTTTAAGATTGGGCCAGCTTTTAGCTATGGCCCAAATGAAAATTTTAAAGCCCAAACATGTCAGCAATAGAATATCACAGACTCAAAGAGGCCAAAACAGATGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

251

Amino Acids

28.24

Weight (kDa)

9.62

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	40 - 109	5.4e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
Acc65I	GGTACC	1 cut(s)	517
AccB1I	GGYRCC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	156, 211
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	687
AfaI	GTAC	5 cut(s)	302, 514, 519, 551, 567
AfiI	CCNNNNNNNGG	2 cut(s)	89, 171
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	3 cut(s)	154, 395, 530
AluBI	AGCT	5 cut(s)	322, 558, 579, 664, 671
AluI	AGCT	5 cut(s)	322, 558, 579, 664, 671
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	156, 211
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	8 cut(s)	91, 229, 324, 590, 634, 658, 675, 736
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	687
Asp718I	GGTACC	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	6 cut(s)	229, 358, 523, 634, 658, 676
AsuC2I	CCSGG	1 cut(s)	348
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	358, 523
BanI	GGYRCC	1 cut(s)	517
BarI	GAAGNNNNNNTAC	4 cut(s)	510, 542, 597, 629
Bbv12I	GWGCWC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	348
BfaI	CTAG	4 cut(s)	27, 32, 170, 498
BfmI	CTRYAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	358, 523
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	6 cut(s)	229, 358, 523, 634, 658, 676
BmiI	GGNNCC	2 cut(s)	360, 519
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	4 cut(s)	4, 333, 383, 737
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	18, 94, 293, 347, 369
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 171
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	2 cut(s)	272, 386
Bse3DI	GCAATG	1 cut(s)	190
BseDI	CCNNGG	5 cut(s)	18, 94, 293, 347, 369
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	89, 171
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	272, 386
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	8 cut(s)	93, 231, 326, 592, 636, 660, 677, 738
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	347, 521, 589
BslFI	GGGAC	2 cut(s)	161, 344
BslI	CCNNNNNNNGG	2 cut(s)	89, 171
BsmFI	GGGAC	2 cut(s)	161, 344
BsnI	GGCC	8 cut(s)	93, 231, 326, 592, 636, 660, 677, 738
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	5 cut(s)	73, 161, 195, 203, 477
Bsp19I	CCATGG	3 cut(s)	18, 293, 369
BspANI	GGCC	8 cut(s)	93, 231, 326, 592, 636, 660, 677, 738
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	360, 519
BspMAI	CTGCAG	1 cut(s)	213
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	156, 211
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	272, 386
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	5 cut(s)	18, 94, 293, 347, 369
BssMI	GATC	5 cut(s)	73, 161, 195, 203, 477
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	4 cut(s)	18, 94, 293, 369
Bst1107I	GTATAC	1 cut(s)	607
Bst4CI	ACNGT	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	324, 328, 662
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	3 cut(s)	18, 293, 369
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	76, 164, 198, 206, 480
BstMBI	GATC	5 cut(s)	73, 161, 195, 203, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 336
BstNSI	RCATGY	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	161, 203
BstYI	RGATCY	2 cut(s)	161, 203
BstZ17I	GTATAC	1 cut(s)	607
BsuRI	GGCC	8 cut(s)	93, 231, 326, 592, 636, 660, 677, 738
BtgI	CCRYGG	3 cut(s)	18, 293, 369
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	3 cut(s)	324, 328, 662
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	6 cut(s)	229, 358, 523, 634, 658, 676
Csp6I	GTAC	5 cut(s)	301, 513, 518, 550, 566
CviAII	CATG	5 cut(s)	19, 294, 308, 370, 704
CviQI	GTAC	5 cut(s)	301, 513, 518, 550, 566
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	5 cut(s)	75, 163, 197, 205, 479
DpnII	GATC	5 cut(s)	73, 161, 195, 203, 477
DraI	TTTAAA	1 cut(s)	693
EaeI	YGGCCR	1 cut(s)	590
Eco130I	CCWWGG	4 cut(s)	18, 94, 293, 369
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	358, 523
Eco88I	CYCGRG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	4 cut(s)	18, 94, 293, 369
ErhI	CCWWGG	4 cut(s)	18, 94, 293, 369
FaeI	CATG	5 cut(s)	22, 297, 311, 373, 707
FaqI	GGGAC	2 cut(s)	161, 344
FatI	CATG	5 cut(s)	18, 293, 307, 369, 703
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	4 cut(s)	27, 32, 170, 498
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	8 cut(s)	93, 231, 326, 592, 636, 660, 677, 738
HapII	CCGG	3 cut(s)	347, 521, 589
HhaI	GCGC	1 cut(s)	535
Hin1II	CATG	5 cut(s)	22, 297, 311, 373, 707
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	556
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	3 cut(s)	347, 521, 589
Hpy166II	GTNNAC	3 cut(s)	246, 568, 607
Hpy188I	TCNGA	3 cut(s)	112, 366, 421
Hpy188III	TCNNGA	5 cut(s)	146, 280, 464, 481, 617
Hpy8I	GTNNAC	3 cut(s)	246, 568, 607
HpyAV	CCTTC	3 cut(s)	277, 481, 536
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	4 cut(s)	183, 211, 311, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 336
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	22, 297, 311, 373, 707
HspAI	GCGC	1 cut(s)	533
KpnI	GGTACC	1 cut(s)	521
Kzo9I	GATC	5 cut(s)	73, 161, 195, 203, 477
LmnI	GCTCC	2 cut(s)	295, 319
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	4 cut(s)	4, 333, 383, 737
MaeI	CTAG	4 cut(s)	27, 32, 170, 498
MalI	GATC	5 cut(s)	75, 163, 197, 205, 479
MboI	GATC	5 cut(s)	73, 161, 195, 203, 477
MboII	GAAGA	2 cut(s)	383, 496
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	2 cut(s)	161, 203
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	4 cut(s)	131, 387, 687, 751
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	664
MseI	TTAA	2 cut(s)	650, 692
MspI	CCGG	3 cut(s)	347, 521, 589
MspR9I	CCNGG	1 cut(s)	348
MunI	CAATTG	1 cut(s)	751
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 336
NciI	CCSGG	1 cut(s)	348
NcoI	CCATGG	3 cut(s)	18, 293, 369
NdeII	GATC	5 cut(s)	73, 161, 195, 203, 477
NlaIII	CATG	5 cut(s)	22, 297, 311, 373, 707
NlaIV	GGNNCC	2 cut(s)	360, 519
NspI	RCATGY	1 cut(s)	707
PaqCI	CACCTGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	703
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	703
Psp5II	RGGWCCY	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	360, 519
PspPI	GGNCC	6 cut(s)	229, 358, 523, 634, 658, 676
PspPPI	RGGWCCY	1 cut(s)	358
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	161, 203
RsaI	GTAC	5 cut(s)	302, 514, 519, 551, 567
RsaNI	GTAC	5 cut(s)	301, 513, 518, 550, 566
SaqAI	TTAA	2 cut(s)	650, 692
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	73, 161, 195, 203, 477
Sau96I	GGNCC	6 cut(s)	229, 358, 523, 634, 658, 676
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	4 cut(s)	4, 333, 383, 737
SfcI	CTRYAG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	358, 523
Sse9I	AATT	4 cut(s)	131, 387, 687, 751
SspMI	CTAG	4 cut(s)	27, 32, 170, 498
StyD4I	CCNGG	1 cut(s)	346
StyI	CCWWGG	4 cut(s)	18, 94, 293, 369
TaaI	ACNGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	618
TasI	AATT	4 cut(s)	131, 387, 687, 751
Tru1I	TTAA	2 cut(s)	650, 692
Tru9I	TTAA	2 cut(s)	650, 692
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	698
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	358, 523
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	687
XceI	RCATGY	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	606
XspI	CTAG	4 cut(s)	27, 32, 170, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.