Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Reverse (-)

12581315 .. 12583006

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTGTTCTTGCAAGCTCCCAGTGAATATGGTGCTTTTTCTTTTTTTGTTCACAACTTCTCTGATGCTCATGGCTGCCTCAGCTGGTAATTTCTACCAAGACTTTGACGTTACATTTGGCGATGGACGTGCCAAGATACTCAATGGAGGACAGCTTCTCACGCTCAACCTTGACCAGGCTTCAGGGTCTGGTTTCAAGTCCAAAAATGAGTACTTATTTGGAAGGATTGATATGCAGATCAAGTTGGTCGCTGGGAATTCGGCTGGAACCGTCACTGCCTACTATTTATCCTCTGAAGGTCCAACTCATGATGAAATCGACTTTGAGTTTTTGGGAAATGTATCTGGAGATCCCTACACTCTCCATACCAATGTGTTCAGCCAAGGAAAAGGGAACAGAGAACAGCAGTTTCAACTTTGGTTTGATCCCACAAATGCCTTCCACACTTACTCCATTGTATGGAACTCCCAACGCATTATATTCTTGGTGGACAACATTCCAATCAGAGTGTTCAACAACCTGGAATCAGTTGGAGTCCCATTCCCTAAAAACCAGCCCATGAGGATTTACTCAAGCTTATGGAATGCAGATGACTGGGCAACAAGAGGTGGCCTTGTCAAGACAGACTGGACCAAAGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGCCAATGCTTGTACTGCTGATTCATCATCCTCATGTGCCTCCACTGCATCTACCAATTCAGTAGGAGACAGTGCATGGCAGACTCAAGGTCTTGATGCAGCAGGCCGAAACCGGCTTCGATGGGTGCAACAAAAGTTCATGATCTACAACTACTGCAATGACCTTAAACGTTTCCCACAAGGCCTCCCAGCTGAATGCAGAAGATCAAGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

295

Amino Acids

32.95

Weight (kDa)

8.48

Isoelectric Point (pI)

36.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	32 - 212	2.1e-66	Glycosyl hydrolases family 16
XET_C	PF06955	246 - 289	1e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AclI	AACGTT	1 cut(s)	838
AclWI	GGATC	2 cut(s)	344, 419
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	165, 315
AfaI	GTAC	2 cut(s)	212, 682
AfiI	CCNNNNNNNGG	2 cut(s)	175, 459
AgsI	TTSAA	4 cut(s)	196, 413, 514, 667
AhdI	GACNNNNNGTC	1 cut(s)	756
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	174, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	6 cut(s)	16, 83, 154, 576, 638, 860
AluI	AGCT	6 cut(s)	16, 83, 154, 576, 638, 860
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	2 cut(s)	344, 419
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	4 cut(s)	610, 669, 772, 850
ApeKI	GCWGC	2 cut(s)	74, 767
ApoI	RAATTY	1 cut(s)	256
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	2 cut(s)	299, 630
AvaII	GGWCC	2 cut(s)	299, 630
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	61, 779
BccI	CCATC	2 cut(s)	116, 783
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	176, 521
BcoDI	GTCTC	1 cut(s)	729
BisI	GCNGC	2 cut(s)	75, 768
BlsI	GCNGC	2 cut(s)	76, 769
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	176, 521
Bme18I	GGWCC	2 cut(s)	299, 630
BmeRI	GACNNNNNGTC	1 cut(s)	756
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	299, 630
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	176, 521
BmrI	ACTGGG	2 cut(s)	14, 604
BmsI	GCATC	3 cut(s)	54, 725, 754
BmuI	ACTGGG	2 cut(s)	14, 604
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	556, 738
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	6 cut(s)	434, 464, 622, 652, 837, 867
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 459
Bse118I	RCCGGY	1 cut(s)	780
Bse1I	ACTGG	3 cut(s)	20, 599, 632
Bse3DI	GCAATG	1 cut(s)	832
BseBI	CCWGG	2 cut(s)	176, 521
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	175, 459
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	3 cut(s)	20, 599, 632
BseXI	GCAGC	2 cut(s)	61, 779
BseYI	CCCAGC	2 cut(s)	251, 856
BshFI	GGCC	4 cut(s)	612, 671, 774, 852
BsiSI	CCGG	1 cut(s)	781
BslFI	GGGAC	1 cut(s)	521
BslI	CCNNNNNNNGG	2 cut(s)	175, 459
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	521
BsmI	GAATGC	2 cut(s)	589, 869
BsnI	GGCC	4 cut(s)	612, 671, 774, 852
Bsp143I	GATC	5 cut(s)	237, 349, 424, 810, 872
BspANI	GGCC	4 cut(s)	612, 671, 774, 852
BspCNI	CTCAG	1 cut(s)	92
BspHI	TCATGA	2 cut(s)	307, 807
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	344, 419
BsrDI	GCAATG	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	780
BsrI	ACTGG	3 cut(s)	20, 599, 632
BssAI	RCCGGY	1 cut(s)	780
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	5 cut(s)	237, 349, 424, 810, 872
BssT1I	CCWWGG	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	176, 521
Bst4CI	ACNGT	2 cut(s)	271, 740
BstC8I	GCNNGC	2 cut(s)	14, 772
BstDEI	CTNAG	1 cut(s)	79
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	695
BstKTI	GATC	5 cut(s)	240, 352, 427, 813, 875
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	5 cut(s)	237, 349, 424, 810, 872
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 160, 683, 713
BstNI	CCWGG	2 cut(s)	176, 521
BstSCI	CCNGG	2 cut(s)	174, 519
BstV1I	GCAGC	2 cut(s)	61, 779
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	612, 671, 774, 852
BtgZI	GCGATG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	695
BtsI	GCAGTG	3 cut(s)	273, 645, 711
BtsIMutI	CAGTG	5 cut(s)	27, 273, 645, 711, 745
Cac8I	GCNNGC	2 cut(s)	14, 772
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	2 cut(s)	307, 807
Cfr10I	RCCGGY	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	299, 630
Csp6I	GTAC	2 cut(s)	211, 681
CviAII	CATG	6 cut(s)	70, 308, 559, 702, 744, 808
CviQI	GTAC	2 cut(s)	211, 681
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	5 cut(s)	239, 351, 426, 812, 874
DpnII	GATC	5 cut(s)	237, 349, 424, 810, 872
DriI	GACNNNNNGTC	1 cut(s)	756
Eam1105I	GACNNNNNGTC	1 cut(s)	756
Eco130I	CCWWGG	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	852
Eco47I	GGWCC	2 cut(s)	299, 630
Eco57I	CTGAAG	2 cut(s)	165, 315
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	174, 519
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	6 cut(s)	73, 311, 562, 705, 747, 811
FaqI	GGGAC	1 cut(s)	521
FatI	CATG	6 cut(s)	69, 307, 558, 701, 743, 807
Fnu4HI	GCNGC	2 cut(s)	75, 768
FokI	GGATG	1 cut(s)	682
Fsp4HI	GCNGC	2 cut(s)	75, 768
GluI	GCNGC	2 cut(s)	75, 768
GsaI	CCCAGC	2 cut(s)	255, 860
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	612, 671, 774, 852
HapII	CCGG	1 cut(s)	781
Hin1II	CATG	6 cut(s)	73, 311, 562, 705, 747, 811
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	4 cut(s)	524, 534, 689, 751
HpaII	CCGG	1 cut(s)	781
Hpy166II	GTNNAC	2 cut(s)	51, 490
Hpy188I	TCNGA	3 cut(s)	63, 295, 506
Hpy188III	TCNNGA	5 cut(s)	308, 345, 619, 761, 808
Hpy8I	GTNNAC	2 cut(s)	51, 490
HpyAV	CCTTC	3 cut(s)	216, 290, 448
HpyCH4III	ACNGT	2 cut(s)	271, 740
HpyCH4IV	ACGT	3 cut(s)	108, 127, 838
HpyCH4V	TGCA	9 cut(s)	12, 235, 587, 716, 743, 767, 796, 825, 867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 160, 683, 713
HpyF3I	CTNAG	1 cut(s)	79
HpySE526I	ACGT	3 cut(s)	108, 127, 838
Hsp92II	CATG	6 cut(s)	73, 311, 562, 705, 747, 811
Kzo9I	GATC	5 cut(s)	237, 349, 424, 810, 872
LmnI	GCTCC	2 cut(s)	21, 643
Lsp1109I	GCAGC	2 cut(s)	61, 779
LweI	GCATC	3 cut(s)	54, 725, 754
MaeII	ACGT	3 cut(s)	108, 127, 838
MaeIII	GTNAC	2 cut(s)	109, 271
MalI	GATC	5 cut(s)	239, 351, 426, 812, 874
MboI	GATC	5 cut(s)	237, 349, 424, 810, 872
MboII	GAAGA	1 cut(s)	882
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	3 cut(s)	88, 256, 724
MlyI	GAGTC	2 cut(s)	543, 745
MmeI	TCCRAC	2 cut(s)	326, 511
MnlI	CCTC	9 cut(s)	88, 140, 301, 555, 599, 661, 709, 718, 863
MseI	TTAA	1 cut(s)	834
MslI	CAYNNNNRTG	2 cut(s)	369, 700
MspA1I	CMGCKG	2 cut(s)	83, 860
MspI	CCGG	1 cut(s)	781
MspR9I	CCNGG	2 cut(s)	176, 521
Mva1269I	GAATGC	2 cut(s)	589, 869
MvaI	CCWGG	2 cut(s)	176, 521
MwoI	GCNNNNNNNGC	4 cut(s)	80, 160, 683, 713
NdeII	GATC	5 cut(s)	237, 349, 424, 810, 872
NlaIII	CATG	6 cut(s)	73, 311, 562, 705, 747, 811
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	271
PagI	TCATGA	2 cut(s)	307, 807
PceI	AGGCCT	1 cut(s)	852
PctI	GAATGC	2 cut(s)	589, 869
PfeI	GAWTC	2 cut(s)	524, 689
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	76, 769
PleI	GAGTC	2 cut(s)	542, 745
PpsI	GAGTC	2 cut(s)	542, 745
Psp1406I	AACGTT	1 cut(s)	838
Psp6I	CCWGG	2 cut(s)	174, 519
PspFI	CCCAGC	2 cut(s)	251, 856
PspGI	CCWGG	2 cut(s)	174, 519
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	299, 630
PstNI	CAGNNNCTG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	2 cut(s)	83, 860
RsaI	GTAC	2 cut(s)	212, 682
RsaNI	GTAC	2 cut(s)	211, 681
RseI	CAYNNNNRTG	2 cut(s)	369, 700
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	2 cut(s)	75, 768
Sau3AI	GATC	5 cut(s)	237, 349, 424, 810, 872
Sau96I	GGNCC	2 cut(s)	299, 630
ScaI	AGTACT	1 cut(s)	212
SchI	GAGTC	2 cut(s)	543, 745
ScrFI	CCNGG	2 cut(s)	176, 521
SfaNI	GCATC	3 cut(s)	54, 725, 754
SinI	GGWCC	2 cut(s)	299, 630
SmiMI	CAYNNNNRTG	2 cut(s)	369, 700
SmlI	CTYRAG	2 cut(s)	571, 753
SmoI	CTYRAG	2 cut(s)	571, 753
Sse9I	AATT	3 cut(s)	88, 256, 724
SseBI	AGGCCT	1 cut(s)	852
StuI	AGGCCT	1 cut(s)	852
StyD4I	CCNGG	2 cut(s)	174, 519
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	271, 740
TaiI	ACGT	3 cut(s)	111, 130, 841
TaqI	TCGA	2 cut(s)	318, 787
TasI	AATT	3 cut(s)	88, 256, 724
TatI	WGTACW	2 cut(s)	210, 680
TfiI	GAWTC	2 cut(s)	524, 689
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	5 cut(s)	27, 280, 652, 718, 745
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	74, 767
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	327, 681, 796
TspRI	CASTG	5 cut(s)	27, 280, 652, 718, 745
Van91I	CCANNNNNTGG	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	299, 630
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	256
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.