MD09G1152600.v1.1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
12137760 .. 12139185
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1152600.v1.1.491

Sequence Viewer

Length: 888 bp
ATGTCTTCTTGTACGGTACCAATGAATATGGTGTTTCTTCTTTCTCTGTTCACAACTTCTCTAATGGTCATGACCGCCTCAGCTGGTAATTTCTTTCAAGACTTTGACATTACATTTGGCGACGGACGTGCCAAGATACTCAACGGAGGACAGCTTCTCACGCTCAACCTTGATAAGGCCTCTGGGTCTGGCTTCAAGTCCAAGAATGAGTACTTATTTGGAAGGATTGACATGCAGATCAAGCTCGTCTCCGGCAACTCAGCTGGAACCGTTACTGCCTACTATTTATCTTCTGAAGGTCCAACCCATGACGAGATTGATTTCGAGTTTTTGGGCAACTCAACTGGTGAACCCTACACTCTCCATACCAATGTCTTCAGCCAAGGAAAAGGGAACAGAGAACAACAATTCCATCTTTGGTTTGACCCCACAAAAACCTTCCACACATACTCCATTGTTTGGAACTCGCAGCGCATTATATTCTTGGTGGATAACATTCCAATCAGAGTGTTCAACAACTTGGAATCAGCTGGAGTCCCATTCCCTAAAAACCAGCCCATGAGGATTTATTCAAGTTTGTGGAATGCAGATGACTGGGCAACAAGAGGTGGACTTGTCAAGACTGATTGGACTCAAGCTCCTTTCACCGCCTCTTACAGAAACTTCAAGGCCAATGCTTGTACTGCTAGCTCACCATCCTCCTGTGCCTCCACTACATCTACTAATTCATTGACAGAGCAGAGTGCATGGAAAACTCAAGGGCTTGATGCCGCAGGCCGAAACAGGCTTCGTTGGGTGCAACAAAAGTTCATGGTTTACAACTACTGCTCTGATCTTAAACGCTTCCCACAAGGCCTCCCAACTGAATGCAAGCGATCGAGGTTCTAG

Protein Analysis

296

Amino Acids

33.1

Weight (kDa)

8.92

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 33 - 211 7.3e-67 Glycosyl hydrolases family 16
XET_C PF06955 247 - 290 2.6e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 459
AciI CCGC 3 cut(s) 75, 648, 771
AcuI CTGAAG 2 cut(s) 315, 361
AfaI GTAC 4 cut(s) 13, 18, 212, 682
AfiI CCNNNNNNNGG 2 cut(s) 175, 459
AgsI TTSAA 5 cut(s) 98, 196, 514, 573, 667
AjiI CACGTC 1 cut(s) 128
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 7 cut(s) 83, 154, 244, 263, 530, 638, 690
AluI AGCT 7 cut(s) 83, 154, 244, 263, 530, 638, 690
Alw26I GTCTC 1 cut(s) 253
AoxI GGCC 4 cut(s) 177, 669, 775, 853
ApeKI GCWGC 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp718I GGTACC 1 cut(s) 16
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 359, 637, 684
AsuNHI GCTAGC 1 cut(s) 686
AvaII GGWCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 481
BccI CCATC 2 cut(s) 420, 703
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 687, 886
BisI GCNGC 2 cut(s) 470, 771
BlsI GCNGC 2 cut(s) 471, 772
BmcAI AGTACT 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 2 cut(s) 18, 268
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 1 cut(s) 757
BmtI GCTAGC 1 cut(s) 690
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 552
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 618, 741
BsaJI CCNNGG 1 cut(s) 382
BsaXI ACNNNNNCTCC 6 cut(s) 434, 464, 622, 652, 840, 870
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 459
Bse1I ACTGG 2 cut(s) 349, 599
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 695
BseLI CCNNNNNNNGG 2 cut(s) 175, 459
BseMII CTCAG 2 cut(s) 93, 273
BseNI ACTGG 2 cut(s) 349, 599
BseXI GCAGC 1 cut(s) 481
Bsh1285I CGRYCG 1 cut(s) 878
BshFI GGCC 4 cut(s) 179, 671, 777, 855
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 878
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 175, 459
BsmAI GTCTC 1 cut(s) 253
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 521
BsmI GAATGC 2 cut(s) 589, 872
BsnI GGCC 4 cut(s) 179, 671, 777, 855
Bsp143I GATC 3 cut(s) 237, 832, 875
BspACI CCGC 3 cut(s) 75, 648, 771
BspANI GGCC 4 cut(s) 179, 671, 777, 855
BspCNI CTCAG 2 cut(s) 92, 272
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 18, 268
BspOI GCTAGC 1 cut(s) 690
BspT107I GGYRCC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 349, 599
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 3 cut(s) 237, 832, 875
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 16, 271
BstC8I GCNNGC 3 cut(s) 688, 775, 872
BstDEI CTNAG 2 cut(s) 79, 259
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 695
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 3 cut(s) 240, 835, 878
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 3 cut(s) 237, 832, 875
BstMCI CGRYCG 1 cut(s) 878
BstMWI GCNNNNNNNGC 3 cut(s) 160, 241, 683
BstNSI RCATGY 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 367
BsuRI GGCC 4 cut(s) 179, 671, 777, 855
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 1 cut(s) 695
Cac8I GCNNGC 3 cut(s) 688, 775, 872
CciI TCATGA 1 cut(s) 69
CfoI GCGC 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 12, 17, 211, 681
CviAII CATG 6 cut(s) 70, 232, 308, 559, 747, 811
CviQI GTAC 4 cut(s) 12, 17, 211, 681
DdeI CTNAG 2 cut(s) 79, 259
DpnI GATC 3 cut(s) 239, 834, 877
DpnII GATC 3 cut(s) 237, 832, 875
Eco130I CCWWGG 1 cut(s) 382
Eco147I AGGCCT 2 cut(s) 179, 855
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 2 cut(s) 315, 361
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 6 cut(s) 73, 235, 311, 562, 750, 814
FaqI GGGAC 1 cut(s) 521
FatI CATG 6 cut(s) 69, 231, 307, 558, 746, 810
Fnu4HI GCNGC 2 cut(s) 470, 771
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 2 cut(s) 470, 771
FspBI CTAG 2 cut(s) 687, 886
GlaI GCGC 1 cut(s) 473
GluI GCNGC 2 cut(s) 470, 771
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 4 cut(s) 179, 671, 777, 855
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 474
Hin1II CATG 6 cut(s) 73, 235, 311, 562, 750, 814
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HinfI GANTC 3 cut(s) 524, 534, 631
HpaII CCGG 1 cut(s) 252
HphI GGTGA 3 cut(s) 359, 637, 684
Hpy166II GTNNAC 4 cut(s) 51, 350, 611, 817
Hpy188I TCNGA 3 cut(s) 295, 506, 832
Hpy188III TCNNGA 3 cut(s) 70, 98, 619
Hpy8I GTNNAC 4 cut(s) 51, 350, 611, 817
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 216, 290, 448
HpyCH4III ACNGT 2 cut(s) 16, 271
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 235, 587, 746, 799, 870
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 241, 683
HpyF3I CTNAG 2 cut(s) 79, 259
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 6 cut(s) 73, 235, 311, 562, 750, 814
HspAI GCGC 1 cut(s) 472
KpnI GGTACC 1 cut(s) 20
Kzo9I GATC 3 cut(s) 237, 832, 875
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 757
MaeI CTAG 2 cut(s) 687, 886
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 239, 834, 877
MboI GATC 3 cut(s) 237, 832, 875
MboII GAAGA 3 cut(s) 29, 282, 367
MluCI AATT 3 cut(s) 88, 407, 724
MlyI GAGTC 2 cut(s) 543, 625
MmeI TCCRAC 1 cut(s) 326
MseI TTAA 1 cut(s) 837
MslI CAYNNNNRTG 1 cut(s) 369
MspA1I CMGCKG 3 cut(s) 83, 263, 530
MspI CCGG 1 cut(s) 252
Mva1269I GAATGC 2 cut(s) 589, 872
MwoI GCNNNNNNNGC 3 cut(s) 160, 241, 683
NdeII GATC 3 cut(s) 237, 832, 875
NheI GCTAGC 1 cut(s) 686
NlaIII CATG 6 cut(s) 73, 235, 311, 562, 750, 814
NlaIV GGNNCC 2 cut(s) 18, 268
NspI RCATGY 1 cut(s) 235
PagI TCATGA 1 cut(s) 69
PceI AGGCCT 2 cut(s) 179, 855
PctI GAATGC 2 cut(s) 589, 872
PfeI GAWTC 1 cut(s) 524
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 2 cut(s) 471, 772
Ple19I CGATCG 1 cut(s) 878
PleI GAGTC 2 cut(s) 542, 625
PpsI GAGTC 2 cut(s) 542, 625
PspN4I GGNNCC 2 cut(s) 18, 268
PspPI GGNCC 1 cut(s) 299
PvuI CGATCG 1 cut(s) 878
PvuII CAGCTG 3 cut(s) 83, 263, 530
RsaI GTAC 4 cut(s) 13, 18, 212, 682
RsaNI GTAC 4 cut(s) 12, 17, 211, 681
RseI CAYNNNNRTG 1 cut(s) 369
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 2 cut(s) 470, 771
Sau3AI GATC 3 cut(s) 237, 832, 875
Sau96I GGNCC 1 cut(s) 299
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 543, 625
SfaNI GCATC 1 cut(s) 757
SinI GGWCC 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 633, 756
SmoI CTYRAG 2 cut(s) 633, 756
Sse9I AATT 3 cut(s) 88, 407, 724
SseBI AGGCCT 2 cut(s) 179, 855
SsiI CCGC 3 cut(s) 75, 648, 771
SspMI CTAG 2 cut(s) 687, 886
StuI AGGCCT 2 cut(s) 179, 855
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 16, 271
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 324, 878
TasI AATT 3 cut(s) 88, 407, 724
TatI WGTACW 2 cut(s) 210, 680
TauI GCSGC 1 cut(s) 773
TfiI GAWTC 1 cut(s) 524
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TseI GCWGC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 38, 717, 799
TspGWI ACGGA 2 cut(s) 138, 159
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 299
XagI CCTNNNNNAGG 1 cut(s) 173
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 687, 886
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.