Rh2CG473100

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
63844731 .. 63847952
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG473100.1

Sequence Viewer

Length: 1002 bp
ATGCCATTTCTATACTTTTTGCAACACATATCACTTACTTTCAAAAGAAAAGACCAATTTAATTTTGCAAACCATATCCCTCAATTTTCAGATCAAATGTCTTCTTGTAACATCATCCTTTCTCTCTCCTTGTTCATAACTTGTGTCATGGTCATTATGGCCTCTGCTAGTAATTTCTATCAGGACTTTCACATTTTATTCGGTGACCAACGTGCTCAAATACTTGATGGAGGACAACTTCTCACCCTCTCCCAGGACCAGACTTCCGGGTCCGGCTTCATTTCTCAGAACCAATACCTATTTGGACGGTTCGACATGCAAATGAAGCTGGCGCCAGGGAACACTGCTGGTACCGTCACCACATTTTATTTATCATCTTCAGGGTACCATCATGATGAGATTGACTTGGAGTTTCTTGGAAACACATCCGGGAATCCCTACACTCTCAGTACTAATATCTACACGCAGGCAATAGGGGGTAGAGAACAACAATTCCATCTTTGGTTTGATCCCTCAAAAGACTTCCACACTTACTCCGTTGTTTGGAATGTTCATCGCATTATAATCTTTGTGGATAACAGTCCCATTAGGGTTTTCAACAACTTGGAACTACTTCATGTTCCGTTTCCTAAAAGCCAACCCATGACGATTTACGCCAGTTTCTGGGATGGTGATAGCTGGGCTACACAAGGTGGCCGTGTGAAGATTGACTGGTCTCAAGCTCCTTTCACCGCCTCTTATGGAAGATACAACATCAATGCTTGTCTAGGATCACAGCAGCAAGGTTCATCATCATCGTATCCATTCTCATACACAGACTGTGTTCCCACATCTACCAATTCCTCAAATGTCGACAACTCATGGAGGAATCTAGGGCTTAATGCTGCAGGTCGAAACAGGCTTCGATGGGTTCAAACGAAGTTCATGATCTACAACTACTGCACTGACCGTAATAAGTTTCCCGGTGGTCTGCCACGGGAATGCCAGCATTCCAAGTTCTAG

Protein Analysis

333

Amino Acids

37.96

Weight (kDa)

7.13

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 60 - 239 2.7e-59 Glycosyl hydrolases family 16
XET_C PF06955 286 - 328 1.4e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AasI GACNNNNNNGTC 1 cut(s) 268
Acc36I ACCTGC 1 cut(s) 878
Acc65I GGTACC 2 cut(s) 350, 384
AccB1I GGYRCC 3 cut(s) 331, 350, 384
AccB7I CCANNNNNTGG 1 cut(s) 663
AccI GTMKAC 1 cut(s) 852
AciI CCGC 1 cut(s) 732
AclWI GGATC 2 cut(s) 503, 778
AcoI YGGCCR 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 332
AdeI CACNNNGTG 1 cut(s) 692
AfaI GTAC 3 cut(s) 352, 386, 451
AfiI CCNNNNNNNGG 3 cut(s) 253, 543, 663
AgsI TTSAA 3 cut(s) 43, 598, 914
AjnI CCWGG 2 cut(s) 252, 334
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
AluBI AGCT 3 cut(s) 328, 678, 722
AluI AGCT 3 cut(s) 328, 678, 722
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 720
AlwI GGATC 2 cut(s) 503, 778
AlwNI CAGNNNCTG 1 cut(s) 663
AoxI GGCC 2 cut(s) 159, 694
ApeKI GCWGC 2 cut(s) 778, 884
Asp700I GAANNNNTTC 1 cut(s) 612
Asp718I GGTACC 2 cut(s) 350, 384
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 256, 270
AsuC2I CCSGG 3 cut(s) 268, 430, 963
AsuHPI GGTGA 5 cut(s) 215, 235, 349, 683, 721
AvaII GGWCC 2 cut(s) 256, 270
BanI GGYRCC 3 cut(s) 331, 350, 384
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 2 cut(s) 790, 871
BccI CCATC 5 cut(s) 221, 396, 504, 662, 900
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 2 cut(s) 254, 336
BciVI GTATCC 1 cut(s) 810
BcnI CCSGG 3 cut(s) 268, 430, 963
BcoDI GTCTC 1 cut(s) 720
BfaI CTAG 4 cut(s) 168, 767, 872, 1000
BfmI CTRYAG 1 cut(s) 885
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 878
BfuI GTATCC 1 cut(s) 810
BisI GCNGC 2 cut(s) 779, 885
BlsI GCNGC 2 cut(s) 780, 886
BmcAI AGTACT 1 cut(s) 451
Bme1390I CCNGG 5 cut(s) 254, 268, 336, 430, 963
Bme18I GGWCC 2 cut(s) 256, 270
BmgT120I GGNCC 2 cut(s) 256, 270
BmiI GGNNCC 4 cut(s) 271, 333, 352, 386
BmrFI CCNGG 5 cut(s) 254, 268, 336, 430, 963
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 702
BpuMI CCSGG 3 cut(s) 268, 430, 963
BsaHI GRCGYC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 720
BsaJI CCNNGG 3 cut(s) 252, 335, 974
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 543, 663
Bse1I ACTGG 2 cut(s) 657, 716
BseBI CCWGG 2 cut(s) 254, 336
BseDI CCNNGG 3 cut(s) 252, 335, 974
BseGI GGATG 3 cut(s) 114, 425, 673
BseLI CCNNNNNNNGG 3 cut(s) 253, 543, 663
BseMII CTCAG 2 cut(s) 299, 460
BseNI ACTGG 2 cut(s) 657, 716
BseXI GCAGC 2 cut(s) 790, 871
BseYI CCCAGC 1 cut(s) 678
BsgI GTGCAG 1 cut(s) 925
BshFI GGCC 2 cut(s) 161, 696
BshNI GGYRCC 3 cut(s) 331, 350, 384
BsiHKAI GWGCWC 1 cut(s) 217
BsiSI CCGG 4 cut(s) 267, 273, 429, 963
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 3 cut(s) 253, 543, 663
BsmAI GTCTC 1 cut(s) 720
BsmFI GGGAC 1 cut(s) 567
BsmI GAATGC 2 cut(s) 986, 988
BsnI GGCC 2 cut(s) 161, 696
Bso31I GGTCTC 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 91, 508, 770, 927
BspACI CCGC 1 cut(s) 732
BspANI GGCC 2 cut(s) 161, 696
BspCNI CTCAG 2 cut(s) 298, 459
BspHI TCATGA 2 cut(s) 391, 924
BspLI GGNNCC 4 cut(s) 271, 333, 352, 386
BspMAI CTGCAG 1 cut(s) 889
BspMI ACCTGC 1 cut(s) 878
BspPI GGATC 2 cut(s) 503, 778
BspT107I GGYRCC 3 cut(s) 331, 350, 384
BspTNI GGTCTC 1 cut(s) 720
BsrI ACTGG 2 cut(s) 657, 716
BssECI CCNNGG 3 cut(s) 252, 335, 974
BssMI GATC 4 cut(s) 91, 508, 770, 927
BssNI GRCGYC 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 254, 336
Bst4CI ACNGT 5 cut(s) 309, 355, 581, 821, 950
BstACI GRCGYC 1 cut(s) 332
BstC8I GCNNGC 3 cut(s) 330, 468, 986
BstDEI CTNAG 2 cut(s) 285, 446
BstDSI CCRYGG 1 cut(s) 974
BstEII GGTNACC 1 cut(s) 203
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 114, 425, 673
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 94, 511, 773, 930
BstMAI GTCTC 1 cut(s) 720
BstMBI GATC 4 cut(s) 91, 508, 770, 927
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 2 cut(s) 254, 336
BstNSI RCATGY 1 cut(s) 319
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 5 cut(s) 252, 266, 334, 428, 961
BstSFI CTRYAG 1 cut(s) 885
BstV1I GCAGC 2 cut(s) 790, 871
BstV2I GAAGAC 1 cut(s) 93
BsuI GTATCC 1 cut(s) 810
BsuRI GGCC 2 cut(s) 161, 696
BtgI CCRYGG 1 cut(s) 974
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 3 cut(s) 114, 425, 673
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 2 cut(s) 342, 942
BveI ACCTGC 1 cut(s) 878
Cac8I GCNNGC 3 cut(s) 330, 468, 986
CaiI CAGNNNCTG 1 cut(s) 663
CciI TCATGA 2 cut(s) 391, 924
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 256, 270
Csp6I GTAC 3 cut(s) 351, 385, 450
CviAII CATG 7 cut(s) 148, 316, 392, 617, 643, 861, 925
CviQI GTAC 3 cut(s) 351, 385, 450
DdeI CTNAG 2 cut(s) 285, 446
DinI GGCGCC 1 cut(s) 333
DpnI GATC 4 cut(s) 93, 510, 772, 929
DpnII GATC 4 cut(s) 91, 508, 770, 927
DraIII CACNNNGTG 1 cut(s) 692
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 694
Eco31I GGTCTC 1 cut(s) 720
Eco47I GGWCC 2 cut(s) 256, 270
Eco57I CTGAAG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 252, 334
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
FaeI CATG 7 cut(s) 151, 319, 395, 620, 646, 864, 928
FaqI GGGAC 1 cut(s) 567
FatI CATG 7 cut(s) 147, 315, 391, 616, 642, 860, 924
FblI GTMKAC 1 cut(s) 852
Fnu4HI GCNGC 2 cut(s) 779, 885
FokI GGATG 3 cut(s) 101, 412, 680
Fsp4HI GCNGC 2 cut(s) 779, 885
FspBI CTAG 4 cut(s) 168, 767, 872, 1000
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 779, 885
GsaI CCCAGC 1 cut(s) 682
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 161, 696
HapII CCGG 4 cut(s) 267, 273, 429, 963
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 7 cut(s) 151, 319, 395, 620, 646, 864, 928
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 2 cut(s) 433, 868
HpaII CCGG 4 cut(s) 267, 273, 429, 963
HphI GGTGA 5 cut(s) 215, 235, 349, 683, 721
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 2 cut(s) 91, 288
Hpy188III TCNNGA 3 cut(s) 182, 392, 925
Hpy8I GTNNAC 1 cut(s) 853
HpyCH4III ACNGT 5 cut(s) 309, 355, 581, 821, 950
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 22, 68, 319, 887, 942
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 2 cut(s) 285, 446
HpySE526I ACGT 1 cut(s) 211
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 7 cut(s) 151, 319, 395, 620, 646, 864, 928
HspAI GCGC 1 cut(s) 332
KasI GGCGCC 1 cut(s) 331
KpnI GGTACC 2 cut(s) 354, 388
Kzo9I GATC 4 cut(s) 91, 508, 770, 927
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 2 cut(s) 790, 871
MaeI CTAG 4 cut(s) 168, 767, 872, 1000
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 3 cut(s) 107, 203, 355
MalI GATC 4 cut(s) 93, 510, 772, 929
MboI GATC 4 cut(s) 91, 508, 770, 927
MboII GAAGA 4 cut(s) 93, 369, 715, 756
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 6 cut(s) 56, 61, 83, 172, 491, 838
Mly113I GGCGCC 1 cut(s) 332
MnlI CCTC 8 cut(s) 90, 172, 224, 257, 523, 745, 853, 858
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 2 cut(s) 60, 879
MslI CAYNNNNRTG 3 cut(s) 320, 393, 979
MspI CCGG 4 cut(s) 267, 273, 429, 963
MspR9I CCNGG 5 cut(s) 254, 268, 336, 430, 963
Mva1269I GAATGC 2 cut(s) 986, 988
MvaI CCWGG 2 cut(s) 254, 336
MwoI GCNNNNNNNGC 1 cut(s) 325
NarI GGCGCC 1 cut(s) 332
NciI CCSGG 3 cut(s) 268, 430, 963
NdeII GATC 4 cut(s) 91, 508, 770, 927
NlaIII CATG 7 cut(s) 151, 319, 395, 620, 646, 864, 928
NlaIV GGNNCC 4 cut(s) 271, 333, 352, 386
NmuCI GTSAC 2 cut(s) 203, 355
NspI RCATGY 1 cut(s) 319
PagI TCATGA 2 cut(s) 391, 924
PctI GAATGC 2 cut(s) 986, 988
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 2 cut(s) 433, 868
PflMI CCANNNNNTGG 1 cut(s) 663
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 2 cut(s) 780, 886
PluTI GGCGCC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 563
Psp6I CCWGG 2 cut(s) 252, 334
PspEI GGTNACC 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 2 cut(s) 252, 334
PspN4I GGNNCC 4 cut(s) 271, 333, 352, 386
PspPI GGNCC 2 cut(s) 256, 270
PstI CTGCAG 1 cut(s) 889
PstNI CAGNNNCTG 1 cut(s) 663
RsaI GTAC 3 cut(s) 352, 386, 451
RsaNI GTAC 3 cut(s) 351, 385, 450
RseI CAYNNNNRTG 3 cut(s) 320, 393, 979
SalI GTCGAC 1 cut(s) 851
SaqAI TTAA 2 cut(s) 60, 879
SatI GCNGC 2 cut(s) 779, 885
Sau3AI GATC 4 cut(s) 91, 508, 770, 927
Sau96I GGNCC 2 cut(s) 256, 270
ScaI AGTACT 1 cut(s) 451
ScrFI CCNGG 5 cut(s) 254, 268, 336, 430, 963
SduI GDGCHC 1 cut(s) 217
SetI ASST 8 cut(s) 214, 300, 330, 680, 694, 724, 787, 892
SfcI CTRYAG 1 cut(s) 885
SfoI GGCGCC 1 cut(s) 333
SinI GGWCC 2 cut(s) 256, 270
SmiMI CAYNNNNRTG 3 cut(s) 320, 393, 979
SmlI CTYRAG 1 cut(s) 717
SmoI CTYRAG 1 cut(s) 717
Sse9I AATT 6 cut(s) 56, 61, 83, 172, 491, 838
SsiI CCGC 1 cut(s) 732
SspDI GGCGCC 1 cut(s) 331
SspMI CTAG 4 cut(s) 168, 767, 872, 1000
StyD4I CCNGG 5 cut(s) 252, 266, 334, 428, 961
TaaI ACNGT 5 cut(s) 309, 355, 581, 821, 950
TaiI ACGT 1 cut(s) 214
TaqI TCGA 4 cut(s) 312, 852, 892, 904
TasI AATT 6 cut(s) 56, 61, 83, 172, 491, 838
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 2 cut(s) 433, 868
Tru1I TTAA 2 cut(s) 60, 879
Tru9I TTAA 2 cut(s) 60, 879
TscAI CASTG 2 cut(s) 349, 949
TseFI GTSAC 2 cut(s) 203, 355
TseI GCWGC 2 cut(s) 778, 884
Tsp45I GTSAC 2 cut(s) 203, 355
TspDTI ATGAA 7 cut(s) 124, 268, 338, 542, 605, 777, 913
TspGWI ACGGA 2 cut(s) 526, 612
TspRI CASTG 2 cut(s) 349, 949
Van91I CCANNNNNTGG 1 cut(s) 663
VpaK11BI GGWCC 2 cut(s) 256, 270
XagI CCTNNNNNAGG 1 cut(s) 251
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 852
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 4 cut(s) 168, 767, 872, 1000
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.