FvH4_6g38150

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
30190834 .. 30195031
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38150.t1

Sequence Viewer

Length: 888 bp
ATGTCTTCTTCTAAGGTCCCCATGGTGCTTCTTCTTTCTCTGTTCATCACTTCTCTTCTAGCCATGATCGCCTCAGCTGGCAATTTCTTACAAGATTTTGACGTGACGTTTGGTGATCAACGCGTTAAGATACTCGAAGGAGGAAAATCTCTCACGCTCAACCTCGACCAGTATTCTGGCTCTGGTTTCAAATCCAAGAACGAGTACTTATTCGGAAGGATCGACATGCAGATCAAACTTGTGCCTGGAAACTCAGCTGGAACTGTCACTACATACTATTTATCTTCTGAAGGACCAACGCATGATGAAATCGACTTTGAGTTTTTGGGCAACTCATCTGGAAATCCATACACTCTCCACACCAATGTGTTCAGTCAGGGCAAAGGGGACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAAAGGCCTTCCACACCTACTCATTTGTCTGGAACTCCCAACGCATTATATTCTTGGTCGACAACATTCCAATCAGAGTGTTCAACAACTTGGAATCATTTGGTGTTCCATTCCCCAAAAACCAACCAATGAGGGTTTACTCAAGTCTGTGGAATGCCGACGACTGGGCTACACAAGGCGGGCGTGTGAAGACTGACTGGACTCAAGCTCCTTTCACTGCTTCATACCGAAACTTCAAGGCCAATGCTTGTGTTGCTGGATCATCCTCCTCCTCATGCGGTGTCGCCACCACTGCATCGACTGATTCAACACAACAGGGTGCATGGCAGACTCAAACGCTTGATGCTGCAGGGCGAAATAGGCTTCGATGGGTGCAACAAAAGTTCATGGTGTACAACTACTGCTCTGACCTCAAAAGATTTCCCCAAGGCCTTCCAGTCGAATGCAAGCGATCGAGGTTCTAG

Protein Analysis

296

Amino Acids

33.12

Weight (kDa)

8.81

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 31 - 209 1.2e-66 Glycosyl hydrolases family 16
XET_C PF06955 247 - 290 4.1e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 603, 702
AclWI GGATC 3 cut(s) 227, 413, 691
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 206, 818
AfiI CCNNNNNNNGG 1 cut(s) 588
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 190, 508, 661, 732
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 77, 257, 632
AluI AGCT 3 cut(s) 77, 257, 632
AlwI GGATC 3 cut(s) 227, 413, 691
AoxI GGCC 3 cut(s) 429, 663, 853
ApeKI GCWGC 1 cut(s) 770
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 2 cut(s) 16, 293
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 16, 293
BbsI GAAGAC 1 cut(s) 620
BbvCI CCTCAGC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 414, 786
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 1 cut(s) 115
BfaI CTAG 2 cut(s) 59, 886
BfmI CTRYAG 1 cut(s) 771
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 16, 293
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 16, 293
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 598
BmsI GCATC 2 cut(s) 728, 757
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 2 cut(s) 550, 612
BsaJI CCNNGG 2 cut(s) 21, 850
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 588
Bse1I ACTGG 4 cut(s) 169, 593, 626, 860
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 21, 850
BseGI GGATG 1 cut(s) 686
BseLI CCNNNNNNNGG 1 cut(s) 588
BseMII CTCAG 2 cut(s) 87, 267
BseNI ACTGG 4 cut(s) 169, 593, 626, 860
BseRI GAGGAG 2 cut(s) 682, 685
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 878
BshFI GGCC 3 cut(s) 431, 665, 855
BsiEI CGRYCG 1 cut(s) 878
BslFI GGGAC 2 cut(s) 2, 401
BslI CCNNNNNNNGG 1 cut(s) 588
BsmFI GGGAC 2 cut(s) 2, 401
BsmI GAATGC 2 cut(s) 583, 872
BsnI GGCC 3 cut(s) 431, 665, 855
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 2 cut(s) 603, 702
BspANI GGCC 3 cut(s) 431, 665, 855
BspCNI CTCAG 2 cut(s) 86, 266
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 3 cut(s) 227, 413, 691
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 4 cut(s) 169, 593, 626, 860
BssECI CCNNGG 2 cut(s) 21, 850
BssMI GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
BssT1I CCWWGG 2 cut(s) 21, 850
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 3 cut(s) 79, 605, 872
BstDEI CTNAG 3 cut(s) 12, 73, 253
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 686
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 7 cut(s) 69, 118, 222, 234, 421, 686, 878
BstMBI GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
BstMCI CGRYCG 1 cut(s) 878
BstMWI GCNNNNNNNGC 4 cut(s) 68, 677, 716, 784
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 1 cut(s) 620
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 3 cut(s) 431, 665, 855
BtgI CCRYGG 1 cut(s) 21
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 1 cut(s) 686
BtsI GCAGTG 2 cut(s) 639, 714
BtsIMutI CAGTG 2 cut(s) 639, 714
Cac8I GCNNGC 3 cut(s) 79, 605, 872
Cfr13I GGNCC 2 cut(s) 16, 293
Csp6I GTAC 2 cut(s) 205, 817
CviAII CATG 7 cut(s) 22, 64, 226, 302, 699, 747, 811
CviQI GTAC 2 cut(s) 205, 817
DdeI CTNAG 3 cut(s) 12, 73, 253
DpnI GATC 7 cut(s) 68, 117, 221, 233, 420, 685, 877
DpnII GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 21, 850
Eco147I AGGCCT 2 cut(s) 431, 855
Eco47I GGWCC 2 cut(s) 16, 293
Eco57I CTGAAG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 21, 850
ErhI CCWWGG 2 cut(s) 21, 850
FaeI CATG 7 cut(s) 25, 67, 229, 305, 702, 750, 814
FaqI GGGAC 2 cut(s) 2, 401
FatI CATG 7 cut(s) 21, 63, 225, 301, 698, 746, 810
FauI CCCGC 1 cut(s) 596
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 1 cut(s) 673
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 2 cut(s) 59, 886
GluI GCNGC 1 cut(s) 771
HaeIII GGCC 3 cut(s) 431, 665, 855
Hin1II CATG 7 cut(s) 25, 67, 229, 305, 702, 750, 814
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 518, 625, 728, 754
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 484, 562, 817
Hpy188I TCNGA 4 cut(s) 215, 289, 500, 832
Hpy188III TCNNGA 2 cut(s) 339, 454
Hpy8I GTNNAC 3 cut(s) 484, 562, 817
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 5 cut(s) 131, 210, 284, 442, 866
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 2 cut(s) 102, 107
HpyCH4V TGCA 6 cut(s) 229, 719, 746, 773, 799, 870
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 677, 716, 784
HpyF3I CTNAG 3 cut(s) 12, 73, 253
HpySE526I ACGT 2 cut(s) 102, 107
Hsp92II CATG 7 cut(s) 25, 67, 229, 305, 702, 750, 814
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 2 cut(s) 728, 757
MaeI CTAG 2 cut(s) 59, 886
MaeII ACGT 2 cut(s) 102, 107
MaeIII GTNAC 2 cut(s) 103, 265
MalI GATC 7 cut(s) 68, 117, 221, 233, 420, 685, 877
MboI GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
MboII GAAGA 4 cut(s) 23, 47, 276, 625
MluCI AATT 2 cut(s) 82, 401
MluI ACGCGT 1 cut(s) 121
MlyI GAGTC 2 cut(s) 619, 748
MnlI CCTC 9 cut(s) 82, 134, 173, 549, 700, 703, 706, 845, 873
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 363, 365
MspA1I CMGCKG 2 cut(s) 77, 257
MspR9I CCNGG 1 cut(s) 246
Mva1269I GAATGC 2 cut(s) 583, 872
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 68, 677, 716, 784
NcoI CCATGG 1 cut(s) 21
NdeII GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
NlaIII CATG 7 cut(s) 25, 67, 229, 305, 702, 750, 814
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 2 cut(s) 103, 265
NspI RCATGY 1 cut(s) 229
OliI CACNNNNGTG 1 cut(s) 365
PceI AGGCCT 2 cut(s) 431, 855
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PctI GAATGC 2 cut(s) 583, 872
PfeI GAWTC 2 cut(s) 518, 728
PkrI GCNGC 1 cut(s) 772
Ple19I CGATCG 1 cut(s) 878
PleI GAGTC 2 cut(s) 619, 748
PpsI GAGTC 2 cut(s) 619, 748
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 16, 293
PspPPI RGGWCCY 1 cut(s) 16
PsrI GAACNNNNNNTAC 2 cut(s) 253, 285
PstI CTGCAG 1 cut(s) 775
PvuI CGATCG 1 cut(s) 878
PvuII CAGCTG 2 cut(s) 77, 257
RsaI GTAC 2 cut(s) 206, 818
RsaNI GTAC 2 cut(s) 205, 817
RseI CAYNNNNRTG 2 cut(s) 363, 365
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 7 cut(s) 66, 115, 219, 231, 418, 683, 875
Sau96I GGNCC 2 cut(s) 16, 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 619, 748
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 2 cut(s) 728, 757
SfcI CTRYAG 1 cut(s) 771
SinI GGWCC 2 cut(s) 16, 293
SmiMI CAYNNNNRTG 2 cut(s) 363, 365
SmlI CTYRAG 2 cut(s) 565, 627
SmoI CTYRAG 2 cut(s) 565, 627
Sse9I AATT 2 cut(s) 82, 401
SseBI AGGCCT 2 cut(s) 431, 855
SsiI CCGC 2 cut(s) 603, 702
SspMI CTAG 2 cut(s) 59, 886
StuI AGGCCT 2 cut(s) 431, 855
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 2 cut(s) 21, 850
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 2 cut(s) 105, 110
TaqI TCGA 9 cut(s) 135, 165, 222, 312, 483, 722, 790, 864, 878
TasI AATT 2 cut(s) 82, 401
TatI WGTACW 2 cut(s) 204, 816
TfiI GAWTC 2 cut(s) 518, 728
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 646, 721
TseFI GTSAC 2 cut(s) 103, 265
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 103, 265
TspDTI ATGAA 4 cut(s) 34, 321, 636, 799
TspRI CASTG 2 cut(s) 646, 721
VpaK11BI GGWCC 2 cut(s) 16, 293
XceI RCATGY 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 59, 886
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.