FvH4_6g38170

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
30200241 .. 30201614
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38170.t1

Sequence Viewer

Length: 879 bp
ATGTCTTCTTCTAAGGCCTTCATGATGCTTCTAATGCTTTCTGTGGTCTCCTGTAATCTGTTAATAATGGCCGCTTCATCATCAGCTGGTGATTTCTACCGAAACATTGATGTTACATTTGGTGATCAACGCGCTAAGATACTCGACGGAGGAAAACTACTCACCCTCAACCTTGACAAGACTTTAGGGTCTGGCTTCCGGTCCAAAAAAGAGTACTTGTTTGGTAGGATCGACATTCAAATGAAGCTTGTGCCTGGTAACTCAGCTGGCACTGTCACCACATACTATTTATCTTCTGAAGGTGTAACTCATGATGAGATTGATTTCGAGTTTTTGGGCAACTCGACTGGAAATCCTTACACACTCCATACCAATGTGTTCAGTCAGGGAAAAGGAGAAAGAGAACAGCAGTTCCATCTTTGGTTTGATCCTACAAAATCCTTCCACACTTACTCTATCCTTTGGAACACCCACCGCATTATATTTTTCGTGGACAACATTCCAATTAGGGTGTTCGACAATTTGGAATCAATTGGGGTTCCGTTCCCTAAAAAGCAACCAATGAGGATATACTCGAGTTTGTGGAATGCTGATGACTGGGCAACACAAGGTGGACTTGTGAAGACAGACTGGGCACAAGCTCCTTTCACTGCCTCGTACCGGAACTTAAAAGCCAATGCTTGTCTTGCTGGCTCATCATCATCTACTTGTGTCTCCACTACAGCAGAGGACAAAGCATGGCAGAACCAAGCCCTTGATGCTGCAGGTCGAAAGAGGCTTCGATGGGTGCAAAACAAGTTCATGGTTTACAACTACTGTTCTGATCGTAAACGATTCCCGCAAGGTTTTCCACCGGAATGCAAGCGGTCAAGGTTTTAG

Protein Analysis

293

Amino Acids

33.04

Weight (kDa)

9.21

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 33 - 212 9.2e-65 Glycosyl hydrolases family 16
XET_C PF06955 244 - 287 3.5e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 755
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 72, 475, 839, 865
AclWI GGATC 2 cut(s) 236, 422
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 318
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 215, 659
AfiI CCNNNNNNNGG 1 cut(s) 660
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 4 cut(s) 86, 247, 266, 641
AluI AGCT 4 cut(s) 86, 247, 266, 641
Alw26I GTCTC 2 cut(s) 52, 718
AlwI GGATC 2 cut(s) 236, 422
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 2 cut(s) 15, 69
ApeKI GCWGC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 101, 134, 154, 268
AvaI CYCGRG 1 cut(s) 574
AvaII GGWCC 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 637
BbsI GAAGAC 1 cut(s) 629
BbvI GCAGC 1 cut(s) 748
BccI CCATC 2 cut(s) 423, 777
BciT130I CCWGG 1 cut(s) 255
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 52, 718
BfmI CTRYAG 2 cut(s) 720, 762
BfuAI ACCTGC 1 cut(s) 755
BisI GCNGC 2 cut(s) 72, 762
BlsI GCNGC 2 cut(s) 73, 763
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 2 cut(s) 607, 640
BmsI GCATC 2 cut(s) 15, 748
BmuI ACTGGG 2 cut(s) 607, 640
BpiI GAAGAC 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 52
BsaWI WCCGGW 3 cut(s) 198, 660, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 660
Bse1I ACTGG 3 cut(s) 352, 602, 635
BseBI CCWGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 660
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 352, 602, 635
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 2 cut(s) 17, 71
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 3 cut(s) 199, 661, 854
BslI CCNNNNNNNGG 1 cut(s) 660
BsmAI GTCTC 2 cut(s) 52, 718
BsmI GAATGC 2 cut(s) 592, 863
BsnI GGCC 2 cut(s) 17, 71
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 4 cut(s) 124, 228, 427, 823
BspACI CCGC 4 cut(s) 72, 475, 839, 865
BspANI GGCC 2 cut(s) 17, 71
BspCNI CTCAG 1 cut(s) 275
BspFNI CGCG 1 cut(s) 132
BspHI TCATGA 2 cut(s) 21, 310
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 236, 422
BspTNI GGTCTC 1 cut(s) 52
BsrI ACTGG 3 cut(s) 352, 602, 635
BssMI GATC 4 cut(s) 124, 228, 427, 823
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 274, 818
BstC8I GCNNGC 3 cut(s) 268, 691, 863
BstDEI CTNAG 3 cut(s) 12, 135, 262
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 1 cut(s) 134
BstKTI GATC 4 cut(s) 127, 231, 430, 826
BstMAI GTCTC 2 cut(s) 52, 718
BstMBI GATC 4 cut(s) 124, 228, 427, 823
BstMWI GCNNNNNNNGC 3 cut(s) 34, 686, 758
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 2 cut(s) 720, 762
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 629
BsuRI GGCC 2 cut(s) 17, 71
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 270, 648
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 3 cut(s) 268, 691, 863
CciI TCATGA 2 cut(s) 21, 310
CfoI GCGC 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 214, 658
CviAII CATG 4 cut(s) 22, 311, 738, 802
CviQI GTAC 2 cut(s) 214, 658
DdeI CTNAG 3 cut(s) 12, 135, 262
DpnI GATC 4 cut(s) 126, 230, 429, 825
DpnII GATC 4 cut(s) 124, 228, 427, 823
DraIII CACNNNGTG 1 cut(s) 611
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 253
FaeI CATG 4 cut(s) 25, 314, 741, 805
FaiI YATR 8 cut(s) 23, 283, 312, 369, 482, 571, 739, 803
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 4 cut(s) 21, 310, 737, 801
FauI CCCGC 1 cut(s) 846
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 72, 762
Fsp4HI GCNGC 2 cut(s) 72, 762
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 72, 762
HaeIII GGCC 2 cut(s) 17, 71
HapII CCGG 3 cut(s) 199, 661, 854
HhaI GCGC 1 cut(s) 134
Hin1II CATG 4 cut(s) 25, 314, 741, 805
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 2 cut(s) 527, 834
HpaII CCGG 3 cut(s) 199, 661, 854
HphI GGTGA 4 cut(s) 101, 134, 154, 268
Hpy166II GTNNAC 4 cut(s) 493, 614, 808, 830
Hpy188I TCNGA 2 cut(s) 298, 823
Hpy188III TCNNGA 2 cut(s) 22, 311
Hpy8I GTNNAC 4 cut(s) 493, 614, 808, 830
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 28, 293, 451
HpyCH4III ACNGT 2 cut(s) 274, 818
HpyCH4V TGCA 3 cut(s) 764, 790, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 686, 758
HpyF3I CTNAG 3 cut(s) 12, 135, 262
Hsp92II CATG 4 cut(s) 25, 314, 741, 805
HspAI GCGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 124, 228, 427, 823
LmnI GCTCC 1 cut(s) 646
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 2 cut(s) 15, 748
MaeIII GTNAC 4 cut(s) 112, 257, 274, 304
MalI GATC 4 cut(s) 126, 230, 429, 825
MboI GATC 4 cut(s) 124, 228, 427, 823
MboII GAAGA 2 cut(s) 285, 634
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 3 cut(s) 504, 520, 531
MnlI CCTC 6 cut(s) 143, 176, 558, 664, 721, 768
MseI TTAA 2 cut(s) 62, 668
MslI CAYNNNNRTG 3 cut(s) 239, 372, 856
MspA1I CMGCKG 2 cut(s) 86, 266
MspI CCGG 3 cut(s) 199, 661, 854
MspR9I CCNGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 2 cut(s) 592, 863
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 34, 686, 758
NdeII GATC 4 cut(s) 124, 228, 427, 823
NlaIII CATG 4 cut(s) 25, 314, 741, 805
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 574
PagI TCATGA 2 cut(s) 21, 310
PceI AGGCCT 1 cut(s) 17
PctI GAATGC 2 cut(s) 592, 863
PfeI GAWTC 2 cut(s) 527, 834
PkrI GCNGC 2 cut(s) 73, 763
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 201
PspXI VCTCGAGB 1 cut(s) 574
PstI CTGCAG 1 cut(s) 766
PvuII CAGCTG 2 cut(s) 86, 266
RsaI GTAC 2 cut(s) 215, 659
RsaNI GTAC 2 cut(s) 214, 658
RseI CAYNNNNRTG 3 cut(s) 239, 372, 856
SaqAI TTAA 2 cut(s) 62, 668
SatI GCNGC 2 cut(s) 72, 762
Sau3AI GATC 4 cut(s) 124, 228, 427, 823
Sau96I GGNCC 1 cut(s) 201
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 2 cut(s) 15, 748
SfcI CTRYAG 2 cut(s) 720, 762
Sfr274I CTCGAG 1 cut(s) 574
SinI GGWCC 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 574
SmiMI CAYNNNNRTG 3 cut(s) 239, 372, 856
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 3 cut(s) 504, 520, 531
SseBI AGGCCT 1 cut(s) 17
SsiI CCGC 4 cut(s) 72, 475, 839, 865
StuI AGGCCT 1 cut(s) 17
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 274, 818
TaqI TCGA 8 cut(s) 144, 231, 327, 344, 516, 575, 769, 781
TasI AATT 3 cut(s) 504, 520, 531
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 527, 834
Tru1I TTAA 2 cut(s) 62, 668
Tru9I TTAA 2 cut(s) 62, 668
TscAI CASTG 2 cut(s) 277, 655
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 761
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 10, 66, 257, 790
TspGWI ACGGA 2 cut(s) 162, 531
TspRI CASTG 2 cut(s) 277, 655
VpaK11BI GGWCC 1 cut(s) 201
XhoI CTCGAG 1 cut(s) 574
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.