Rorug04G0115400

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000406
Physical Location & Seq
Reverse (-)
18163430 .. 18163744
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0115400.1

Sequence Viewer

Length: 315 bp
ATGGACGTGCAGAAGGAAGAGAGTGCAAACAGCGTCGAAGATAATAGTAGCACTGTAAATTCGAGGAACCAACACATGATAATGAAAAAGAGAGGAAGGCCAAGGAAAGGTAATGCGAAAGATCATGAGGATCATGAGTACTGTAACAATAACAGTGATCTGAAGGAGAGCAGCCGGAGGCATCAGAAATCAGCTGAAGCCGAAGAACCCATCAATTCTGTTGAAGAAGAACTAGTTCTTGATTTTGAAGAGCCTGCAGTGCATACAAAGAGACAGAGACCACGCAAGAGGGCGCCGAGGCGAGCTGCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

104

Amino Acids

12.08

Weight (kDa)

7.93

Isoelectric Point (pI)

69.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AclWI GGATC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 182, 216
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 224, 248
AhlI ACTAGT 1 cut(s) 232
AjiI CACGTC 1 cut(s) 7
AluBI AGCT 2 cut(s) 194, 305
AluI AGCT 2 cut(s) 194, 305
Alw26I GTCTC 2 cut(s) 265, 271
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 171, 305
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 295
BanI GGYRCC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 183, 292
BccI CCATC 1 cut(s) 218
BcoDI GTCTC 2 cut(s) 265, 271
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 2 cut(s) 255, 306
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 2 cut(s) 172, 306
BlsI GCNGC 2 cut(s) 173, 307
BmcAI AGTACT 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 7
BmiI GGNNCC 2 cut(s) 68, 294
BmsI GCATC 1 cut(s) 190
BsaHI GRCGYC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 101, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 101, 296
BseLI CCNNNNNNNGG 1 cut(s) 107
BseXI GCAGC 2 cut(s) 183, 292
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 265, 271
BsnI GGCC 1 cut(s) 100
Bso31I GGTCTC 1 cut(s) 271
Bsp143I GATC 3 cut(s) 121, 130, 157
BspANI GGCC 1 cut(s) 100
BspHI TCATGA 2 cut(s) 124, 133
BspLI GGNNCC 2 cut(s) 68, 294
BspMAI CTGCAG 2 cut(s) 259, 310
BspPI GGATC 1 cut(s) 138
BspQI GCTCTTC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 101, 296
BssMI GATC 3 cut(s) 121, 130, 157
BssNI GRCGYC 1 cut(s) 293
BssT1I CCWWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 55, 143, 155
Bst6I CTCTTC 2 cut(s) 12, 243
BstACI GRCGYC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 255, 303
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 3 cut(s) 124, 133, 160
BstMAI GTCTC 2 cut(s) 265, 271
BstMBI GATC 3 cut(s) 121, 130, 157
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstSFI CTRYAG 2 cut(s) 255, 306
BstV1I GCAGC 2 cut(s) 183, 292
BsuRI GGCC 1 cut(s) 100
BtrI CACGTC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 51, 160, 264
Cac8I GCNNGC 2 cut(s) 255, 303
CciI TCATGA 2 cut(s) 124, 133
CfoI GCGC 1 cut(s) 295
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 76, 125, 134
CviJI RGCY 6 cut(s) 100, 174, 194, 200, 253, 305
CviKI_1 RGCY 6 cut(s) 100, 174, 194, 200, 253, 305
CviQI GTAC 1 cut(s) 139
DinI GGCGCC 1 cut(s) 294
DpnI GATC 3 cut(s) 123, 132, 159
DpnII GATC 3 cut(s) 121, 130, 157
Eam1104I CTCTTC 2 cut(s) 12, 243
EarI CTCTTC 2 cut(s) 12, 243
Eco130I CCWWGG 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 271
Eco57I CTGAAG 2 cut(s) 182, 216
EcoT14I CCWWGG 1 cut(s) 101
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 101
FaeI CATG 3 cut(s) 79, 128, 137
FaiI YATR 4 cut(s) 77, 126, 135, 264
FatI CATG 3 cut(s) 75, 124, 133
Fnu4HI GCNGC 2 cut(s) 172, 306
Fsp4HI GCNGC 2 cut(s) 172, 306
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 172, 306
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 175
HgaI GACGC 1 cut(s) 22
HhaI GCGC 1 cut(s) 295
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 3 cut(s) 79, 128, 137
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HpaII CCGG 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 162, 186
Hpy188III TCNNGA 3 cut(s) 125, 134, 239
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 7, 90, 157
HpyCH4III ACNGT 3 cut(s) 55, 143, 155
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 5 cut(s) 10, 26, 257, 262, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpySE526I ACGT 1 cut(s) 6
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 3 cut(s) 79, 128, 137
HspAI GCGC 1 cut(s) 293
KasI GGCGCC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 121, 130, 157
LguI GCTCTTC 1 cut(s) 243
LpnPI CCDG 2 cut(s) 188, 267
Lsp1109I GCAGC 2 cut(s) 183, 292
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 123, 132, 159
MboI GATC 3 cut(s) 121, 130, 157
MboII GAAGA 6 cut(s) 29, 50, 215, 236, 239, 260
MluCI AATT 2 cut(s) 58, 214
Mly113I GGCGCC 1 cut(s) 293
MnlI CCTC 6 cut(s) 57, 86, 121, 171, 282, 291
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 259
NarI GGCGCC 1 cut(s) 293
NdeII GATC 3 cut(s) 121, 130, 157
NlaIII CATG 3 cut(s) 79, 128, 137
NlaIV GGNNCC 2 cut(s) 68, 294
PagI TCATGA 2 cut(s) 124, 133
PciSI GCTCTTC 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 234
PkrI GCNGC 2 cut(s) 173, 307
PluTI GGCGCC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 68, 294
PstI CTGCAG 2 cut(s) 259, 310
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 80
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 2 cut(s) 172, 306
Sau3AI GATC 3 cut(s) 121, 130, 157
ScaI AGTACT 1 cut(s) 140
SetI ASST 4 cut(s) 9, 112, 196, 307
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 2 cut(s) 255, 306
SfoI GGCGCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 80
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 2 cut(s) 58, 214
SspDI GGCGCC 1 cut(s) 292
SspMI CTAG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 101
TaaI ACNGT 3 cut(s) 55, 143, 155
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 36, 62
TasI AATT 2 cut(s) 58, 214
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 3 cut(s) 58, 160, 264
TseI GCWGC 2 cut(s) 171, 305
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 3 cut(s) 58, 160, 264
XapI RAATTY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 233
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.