RLG00000020546

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
66136747 .. 66137823
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020546

Sequence Viewer

Length: 777 bp
ATGTCTTCCTCTAAGGTCTCAGTGATGCTTTGCCTTTCTGCTGTGTTGTTAAATTCTTTCATGGTCATGGCTGCAGCCGGTAATTTCTATGAAGACTTTGACATCACATTCGGCGAACAACGTGCTAAGATACTCAACGGAGGACAACTTCTCACACTCGACCTCGACCAGTATTCCGGATCTGGTTTCAAGTCCAAGAATGAGTACTTGTTGCTGGCAACTCGGCTGGCACTGTCACTGCATATTATCTATCTTCTCAAGGGGAAAGGGAACAAAGAACAACAATTCTATCTTTGGTTTGATCCTACAAACGCCTTCCACACCTACTCGCTTGTCTGGAACAGCCAACGCATTATATTCTCCGTGGATAATATTCCAGTTAGAGTGTTCAACAACTTGGAGTCAGTTGGTGTTCCATTCCCCAAAAACCAACCGATGAGGATTTACTCGAGTCTATGGAATGCTGATGACTGGGCTACACAAGGTGGGCGTGTGAAGACTGATTGGACTCATGCTCCTTTCACTGCCTCTTACAGAAACTTCAAGGCCAATGCTTGCGTCACTGGCTCATCGTCATCATCATGCGGTGTCTCCACTACTGCTTCAACTAATTCCTTAACTGATCAACAGAGTGCATGGCAGAATCAAGGTCTAGATGCCGCAGGCCGAAACAGGATTCGATGGGTGCAGCAGAAGTTCATGGTCTACAACTACTGTTCTGACCTAAAACGATTTCCCCAAGGTCTTCCGGTAGAATGTACACGATCAAGGTTCTAG

Protein Analysis

259

Amino Acids

29.08

Weight (kDa)

9.19

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 84 - 170 3.3e-31 Glycosyl hydrolases family 16
XET_C PF06955 210 - 253 4.8e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 705
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 2 cut(s) 585, 660
AclWI GGATC 2 cut(s) 187, 296
AcsI RAATTY 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 2 cut(s) 206, 760
AgsI TTSAA 4 cut(s) 190, 391, 544, 606
Alw26I GTCTC 2 cut(s) 22, 595
AlwI GGATC 2 cut(s) 187, 296
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 2 cut(s) 546, 664
ApeKI GCWGC 3 cut(s) 71, 74, 688
ApoI RAATTY 1 cut(s) 52
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AvaI CYCGRG 1 cut(s) 448
BbsI GAAGAC 3 cut(s) 99, 503, 737
BbvI GCAGC 3 cut(s) 58, 86, 700
BccI CCATC 1 cut(s) 675
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BclI TGATCA 1 cut(s) 622
BcoDI GTCTC 2 cut(s) 22, 595
BfaI CTAG 2 cut(s) 653, 775
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 4 cut(s) 72, 75, 660, 689
BlsI GCNGC 4 cut(s) 73, 76, 661, 690
BmcAI AGTACT 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 448
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 2 cut(s) 15, 646
BmuI ACTGGG 1 cut(s) 481
BpiI GAAGAC 3 cut(s) 99, 503, 737
BpuEI CTTGAG 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 363, 739
BsaWI WCCGGW 2 cut(s) 176, 748
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 169, 377, 476, 568
BseAI TCCGGA 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 363, 739
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 4 cut(s) 169, 377, 476, 568
BseXI GCAGC 3 cut(s) 58, 86, 700
BsgI GTGCAG 1 cut(s) 707
BshFI GGCC 2 cut(s) 548, 666
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 3 cut(s) 78, 177, 749
BsmAI GTCTC 2 cut(s) 22, 595
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 2 cut(s) 548, 666
Bso31I GGTCTC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 448
Bsp13I TCCGGA 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 758
Bsp143I GATC 4 cut(s) 179, 301, 622, 764
BspACI CCGC 2 cut(s) 585, 660
BspANI GGCC 2 cut(s) 548, 666
BspCNI CTCAG 1 cut(s) 32
BspEI TCCGGA 1 cut(s) 176
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 187, 296
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 1 cut(s) 758
BsrI ACTGG 4 cut(s) 169, 377, 476, 568
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 363, 739
BssMI GATC 4 cut(s) 179, 301, 622, 764
BssT1I CCWWGG 1 cut(s) 739
Bst4CI ACNGT 2 cut(s) 234, 716
BstAUI TGTACA 1 cut(s) 758
BstC8I GCNNGC 4 cut(s) 216, 228, 556, 664
BstDEI CTNAG 3 cut(s) 12, 19, 126
BstDSI CCRYGG 1 cut(s) 363
BstKTI GATC 4 cut(s) 182, 304, 625, 767
BstMAI GTCTC 2 cut(s) 22, 595
BstMBI GATC 4 cut(s) 179, 301, 622, 764
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 3 cut(s) 58, 86, 700
BstV2I GAAGAC 3 cut(s) 99, 503, 737
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 2 cut(s) 548, 666
BtgI CCRYGG 1 cut(s) 363
BtsI GCAGTG 2 cut(s) 236, 522
BtsIMutI CAGTG 5 cut(s) 27, 230, 236, 522, 561
Cac8I GCNNGC 4 cut(s) 216, 228, 556, 664
Cfr10I RCCGGY 1 cut(s) 77
CseI GACGC 1 cut(s) 547
Csp6I GTAC 2 cut(s) 205, 759
CviAII CATG 6 cut(s) 61, 67, 512, 582, 636, 700
CviJI RGCY 8 cut(s) 71, 77, 226, 345, 476, 548, 567, 666
CviKI_1 RGCY 8 cut(s) 71, 77, 226, 345, 476, 548, 567, 666
CviQI GTAC 2 cut(s) 205, 759
DdeI CTNAG 3 cut(s) 12, 19, 126
DpnI GATC 4 cut(s) 181, 303, 624, 766
DpnII GATC 4 cut(s) 179, 301, 622, 764
DraIII CACNNNGTG 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 22
Eco88I CYCGRG 1 cut(s) 448
EcoT14I CCWWGG 1 cut(s) 739
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 6 cut(s) 64, 70, 515, 585, 639, 703
FatI CATG 6 cut(s) 60, 66, 511, 581, 635, 699
FbaI TGATCA 1 cut(s) 622
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 4 cut(s) 72, 75, 660, 689
Fsp4HI GCNGC 4 cut(s) 72, 75, 660, 689
FspBI CTAG 2 cut(s) 653, 775
GluI GCNGC 4 cut(s) 72, 75, 660, 689
HaeIII GGCC 2 cut(s) 548, 666
HapII CCGG 3 cut(s) 78, 177, 749
HgaI GACGC 1 cut(s) 547
Hin1II CATG 6 cut(s) 64, 70, 515, 585, 639, 703
HinfI GANTC 5 cut(s) 401, 451, 508, 643, 676
HpaII CCGG 3 cut(s) 78, 177, 749
Hpy166II GTNNAC 2 cut(s) 706, 761
Hpy188I TCNGA 1 cut(s) 721
Hpy188III TCNNGA 3 cut(s) 177, 337, 653
Hpy8I GTNNAC 2 cut(s) 706, 761
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 234, 716
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 74, 241, 635, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 3 cut(s) 12, 19, 126
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 6 cut(s) 64, 70, 515, 585, 639, 703
Kpn2I TCCGGA 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 4 cut(s) 179, 301, 622, 764
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 3 cut(s) 58, 86, 700
LweI GCATC 2 cut(s) 15, 646
MaeI CTAG 2 cut(s) 653, 775
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 2 cut(s) 234, 559
MalI GATC 4 cut(s) 181, 303, 624, 766
MboI GATC 4 cut(s) 179, 301, 622, 764
MboII GAAGA 4 cut(s) 104, 245, 508, 737
MflI RGATCY 1 cut(s) 179
MluCI AATT 4 cut(s) 52, 82, 284, 610
MlyI GAGTC 3 cut(s) 410, 460, 502
MnlI CCTC 5 cut(s) 19, 134, 173, 432, 538
MroI TCCGGA 1 cut(s) 176
MseI TTAA 2 cut(s) 50, 617
MslI CAYNNNNRTG 2 cut(s) 65, 580
MspI CCGG 3 cut(s) 78, 177, 749
Mva1269I GAATGC 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 564
NdeII GATC 4 cut(s) 179, 301, 622, 764
NlaIII CATG 6 cut(s) 64, 70, 515, 585, 639, 703
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 234, 559
PaeR7I CTCGAG 1 cut(s) 448
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 2 cut(s) 643, 676
PkrI GCNGC 4 cut(s) 73, 76, 661, 690
PleI GAGTC 3 cut(s) 409, 459, 502
PpsI GAGTC 3 cut(s) 409, 459, 502
PspXI VCTCGAGB 1 cut(s) 448
PstI CTGCAG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 2 cut(s) 206, 760
RsaNI GTAC 2 cut(s) 205, 759
RseI CAYNNNNRTG 2 cut(s) 65, 580
SaqAI TTAA 2 cut(s) 50, 617
SatI GCNGC 4 cut(s) 72, 75, 660, 689
Sau3AI GATC 4 cut(s) 179, 301, 622, 764
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 3 cut(s) 410, 460, 502
SetI ASST 9 cut(s) 18, 124, 165, 326, 487, 652, 726, 745, 773
SfaNI GCATC 2 cut(s) 15, 646
SfcI CTRYAG 1 cut(s) 72
Sfr274I CTCGAG 1 cut(s) 448
SlaI CTCGAG 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 65, 580
SmlI CTYRAG 2 cut(s) 257, 448
SmoI CTYRAG 2 cut(s) 257, 448
Sse9I AATT 4 cut(s) 52, 82, 284, 610
SsiI CCGC 2 cut(s) 585, 660
SspI AATATT 1 cut(s) 373
SspMI CTAG 2 cut(s) 653, 775
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 2 cut(s) 234, 716
TaiI ACGT 1 cut(s) 124
TaqI TCGA 4 cut(s) 159, 165, 449, 679
TasI AATT 4 cut(s) 52, 82, 284, 610
TatI WGTACW 2 cut(s) 204, 758
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 2 cut(s) 643, 676
Tru1I TTAA 2 cut(s) 50, 617
Tru9I TTAA 2 cut(s) 50, 617
TscAI CASTG 5 cut(s) 27, 237, 243, 529, 568
TseFI GTSAC 2 cut(s) 234, 559
TseI GCWGC 3 cut(s) 71, 74, 688
Tsp45I GTSAC 2 cut(s) 234, 559
TspDTI ATGAA 3 cut(s) 49, 105, 688
TspGWI ACGGA 2 cut(s) 153, 352
TspRI CASTG 5 cut(s) 27, 237, 243, 529, 568
XapI RAATTY 1 cut(s) 52
XbaI TCTAGA 1 cut(s) 652
XhoI CTCGAG 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 2 cut(s) 653, 775
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.