RchiOBHm_Chr2g0151421

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
69024337 .. 69025814
1478 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52062

Sequence Viewer

Length: 879 bp
ATGTCTTCTTCTAAGGTCTCCATGATGCTTCTAATGCTTTCTCTGGCCTCAAGTAGTTATCTGTTAATGGCTACCTCATCAGCTGGTGATTTCTTCCGAGACATTGATGTTACTTTTGGCGATCAACGTGCTAAGATAATCGATGGAGGACAACTACTCACGCTCAGCCTTGACAAGATTTCTGGGTCTGGCTTCAAGTCTAAGAATGAGTACTTGTTTGGTAGGATCGACATGCAAATAAAGCTCGTGCCTGGTAACGCAGCTGGCACTGTCACCACATACTATTTATCTTCTGAAGGTCTAACTCACGATGAGATTGATTTTGAGTTTCTGGGCAACTCAACTGGAAATCCTTACACTGTCCACACCAATGTGTTCAGTCAGGGCAAAGGGGGAAGAGAGCAACAATTCCATCTTTGGTTTGATCCCACAAAAGCCTTCCACACTTACTCCATTCTTTGGAACACCCACCGCATTATATTTTTCGTGGACAACATTCCAATTAGGGTGTTCGACAATTTGGAATCAATTGGGGTTCCATTCCCCAAAAAGCAACCAATGAGGATTTACTCAAGTTTGTGGAATGCTGACGACTGGGCAACACAAGGTGGTCTTGTGAAGACAGACTGGGCACAAGCTCCTTTCACTGCCTCTTACAGGAACTTAAAGGCCAATGCTTGTCTTGCTGGCTCATCATCGTCATCTAGTTGTGTCTCCACTACGGCAGAGGACAAATCATGGCAGAACCAAGCGCTTGATGCTGCAGGTAGAAAGAGGCTTCGATGGGTGCAAAAGAAGTTCATGGTTTACAACTACTGTTCTGATCGTAAACGATTCCCGCAAGGTTTTCCACTGGAATGCAAGCGGTCAAGGTTCTAG

Protein Analysis

292

Amino Acids

32.86

Weight (kDa)

9.17

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 34 - 211 6.4e-65 Glycosyl hydrolases family 16
XET_C PF06955 244 - 287 9.7e-21 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 459
AciI CCGC 3 cut(s) 472, 839, 865
AclWI GGATC 2 cut(s) 233, 419
AcuI CTGAAG 1 cut(s) 315
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 1 cut(s) 212
AfeI AGCGCT 1 cut(s) 753
AfiI CCNNNNNNNGG 2 cut(s) 459, 657
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 250
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 4 cut(s) 83, 244, 263, 638
AluI AGCT 4 cut(s) 83, 244, 263, 638
Alw26I GTCTC 3 cut(s) 22, 93, 718
AlwI GGATC 2 cut(s) 233, 419
Aor51HI AGCGCT 1 cut(s) 753
AoxI GGCC 2 cut(s) 45, 669
ApeKI GCWGC 2 cut(s) 260, 761
AspLEI GCGC 1 cut(s) 754
AsuHPI GGTGA 2 cut(s) 98, 265
BaeGI GKGCMC 1 cut(s) 634
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 626
BbvI GCAGC 2 cut(s) 272, 748
BccI CCATC 3 cut(s) 137, 420, 777
BceAI ACGGC 1 cut(s) 738
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 3 cut(s) 22, 93, 718
BfaI CTAG 2 cut(s) 705, 877
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 755
BfuAI ACCTGC 1 cut(s) 755
BisI GCNGC 2 cut(s) 261, 762
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 2 cut(s) 262, 763
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 537
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 2 cut(s) 604, 637
BmsI GCATC 2 cut(s) 15, 748
BmuI ACTGGG 2 cut(s) 604, 637
BpiI GAAGAC 1 cut(s) 626
Bpu1102I GCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 34, 556
Bsa29I ATCGAT 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 22
BsaXI ACNNNNNCTCC 2 cut(s) 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 459, 657
Bse1I ACTGG 4 cut(s) 349, 599, 632, 858
BseBI CCWGG 1 cut(s) 252
BseCI ATCGAT 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 459, 657
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 4 cut(s) 349, 599, 632, 858
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 2 cut(s) 272, 748
BshFI GGCC 2 cut(s) 47, 671
BshVI ATCGAT 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 459, 657
BsmAI GTCTC 3 cut(s) 22, 93, 718
BsmI GAATGC 2 cut(s) 589, 863
BsnI GGCC 2 cut(s) 47, 671
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 4 cut(s) 121, 225, 424, 823
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 3 cut(s) 472, 839, 865
BspANI GGCC 2 cut(s) 47, 671
BspCNI CTCAG 1 cut(s) 177
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 537
BspMAI CTGCAG 1 cut(s) 766
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 2 cut(s) 233, 419
BspTNI GGTCTC 1 cut(s) 22
BsrI ACTGG 4 cut(s) 349, 599, 632, 858
BssMI GATC 4 cut(s) 121, 225, 424, 823
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 3 cut(s) 271, 361, 818
Bst6I CTCTTC 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 265, 688, 863
BstDEI CTNAG 4 cut(s) 12, 132, 164, 201
BstENI CCTNNNNNAGG 1 cut(s) 655
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 4 cut(s) 124, 228, 427, 826
BstMAI GTCTC 3 cut(s) 22, 93, 718
BstMBI GATC 4 cut(s) 121, 225, 424, 823
BstMWI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 758
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 2 cut(s) 272, 748
BstV2I GAAGAC 1 cut(s) 626
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 2 cut(s) 47, 671
BsuTUI ATCGAT 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 4 cut(s) 267, 357, 645, 851
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 3 cut(s) 265, 688, 863
CfoI GCGC 1 cut(s) 754
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 211
CviAII CATG 4 cut(s) 22, 232, 738, 802
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 4 cut(s) 12, 132, 164, 201
DpnI GATC 4 cut(s) 123, 227, 426, 825
DpnII GATC 4 cut(s) 121, 225, 424, 823
DraIII CACNNNGTG 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 22
Eco47III AGCGCT 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 315
EcoNI CCTNNNNNAGG 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 4 cut(s) 25, 235, 741, 805
FaiI YATR 6 cut(s) 23, 233, 280, 479, 739, 803
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 4 cut(s) 21, 231, 737, 801
FauI CCCGC 1 cut(s) 846
Fnu4HI GCNGC 2 cut(s) 261, 762
Fsp4HI GCNGC 2 cut(s) 261, 762
FspBI CTAG 2 cut(s) 705, 877
GlaI GCGC 1 cut(s) 753
GluI GCNGC 2 cut(s) 261, 762
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 2 cut(s) 47, 671
HhaI GCGC 1 cut(s) 754
Hin1II CATG 4 cut(s) 25, 235, 741, 805
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HinfI GANTC 2 cut(s) 524, 834
HphI GGTGA 2 cut(s) 98, 265
Hpy166II GTNNAC 4 cut(s) 364, 490, 808, 830
Hpy188I TCNGA 3 cut(s) 98, 295, 823
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 4 cut(s) 364, 490, 808, 830
HpyAV CCTTC 2 cut(s) 290, 448
HpyCH4III ACNGT 3 cut(s) 271, 361, 818
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 235, 764, 790, 861
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 758
HpyF3I CTNAG 4 cut(s) 12, 132, 164, 201
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 4 cut(s) 25, 235, 741, 805
HspAI GCGC 1 cut(s) 752
Kzo9I GATC 4 cut(s) 121, 225, 424, 823
LmnI GCTCC 1 cut(s) 643
Lsp1109I GCAGC 2 cut(s) 272, 748
LweI GCATC 2 cut(s) 15, 748
MaeI CTAG 2 cut(s) 705, 877
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 3 cut(s) 109, 254, 271
MalI GATC 4 cut(s) 123, 227, 426, 825
MboI GATC 4 cut(s) 121, 225, 424, 823
MboII GAAGA 4 cut(s) 85, 282, 408, 631
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 4 cut(s) 407, 501, 517, 528
MnlI CCTC 7 cut(s) 58, 85, 140, 555, 661, 721, 768
MseI TTAA 2 cut(s) 65, 665
MslI CAYNNNNRTG 3 cut(s) 369, 371, 856
MspA1I CMGCKG 2 cut(s) 83, 263
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 2 cut(s) 589, 863
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 34, 241, 683, 758
NdeII GATC 4 cut(s) 121, 225, 424, 823
NlaIII CATG 4 cut(s) 25, 235, 741, 805
NlaIV GGNNCC 1 cut(s) 537
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 235
OliI CACNNNNGTG 1 cut(s) 371
PctI GAATGC 2 cut(s) 589, 863
PfeI GAWTC 2 cut(s) 524, 834
PflMI CCANNNNNTGG 1 cut(s) 459
PkrI GCNGC 2 cut(s) 262, 763
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 537
PstI CTGCAG 1 cut(s) 766
PvuII CAGCTG 2 cut(s) 83, 263
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 3 cut(s) 369, 371, 856
SaqAI TTAA 2 cut(s) 65, 665
SatI GCNGC 2 cut(s) 261, 762
Sau3AI GATC 4 cut(s) 121, 225, 424, 823
ScaI AGTACT 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 15, 748
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 3 cut(s) 369, 371, 856
SmlI CTYRAG 2 cut(s) 49, 571
SmoI CTYRAG 2 cut(s) 49, 571
Sse9I AATT 4 cut(s) 407, 501, 517, 528
SsiI CCGC 3 cut(s) 472, 839, 865
SspMI CTAG 2 cut(s) 705, 877
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 271, 361, 818
TaiI ACGT 1 cut(s) 130
TaqI TCGA 4 cut(s) 141, 228, 513, 781
TasI AATT 4 cut(s) 407, 501, 517, 528
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 2 cut(s) 524, 834
Tru1I TTAA 2 cut(s) 65, 665
Tru9I TTAA 2 cut(s) 65, 665
TscAI CASTG 4 cut(s) 274, 364, 652, 858
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 260, 761
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 790
TspRI CASTG 4 cut(s) 274, 364, 652, 858
Van91I CCANNNNNTGG 1 cut(s) 459
XagI CCTNNNNNAGG 1 cut(s) 655
XceI RCATGY 1 cut(s) 235
XspI CTAG 2 cut(s) 705, 877
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.