Prupe.1G169700_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000406
Physical Location & Seq
Reverse (-)
13904668 .. 13906929
2262 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G169700.1

Sequence Viewer

Length: 834 bp
ATGGGGATTTCTAGTAATGGGTTGAGTTTGGTTTTGTTGGTGGGATTAGTTTTTAGCTCTTTAATGGTAGCAACTTATGCGGGAAACTTTTATCAAGATTTTGACCTAACATGGGGAGGTAACCGACCCAAAATATTCAAGGGAGGCCAGCTTCTGTCTCTATCCTTGGACAAAGTTTCTGGCTCTGGGTTTCAGTCCAAGAAAGAGTACCTATTTGGGAGGATTGATATGCAGCTTAAGCTTGTTCCTGGCAACTCTGCCGGCACCGTCACTGCATATTACTTGTCCTCTCAAGGCCCTACCCACGACGAAATCGACTTCGAGTTCTTGGGAAATCTCAGTGGCGATCCTTACGTTTTGCACACCAATGTTTTCACTCAGGGCAAGGGAAACAGAGAGCAACAATTCTATCTCTGGTTTAATCCCTCAAGAAACTTTCACACCTACTCCGTCATCTGGAAACCCCAACATATAATCTTCTTGGTTGACAACATTCCTATTAGAGTATTCAACAACGCCGAGTCAGTTGGTGTCCCATTCCCTAAGAGCCAACCCATGAGGATTTACTCAAGCCTTTGGAACGCCGACGACTGGGCCACCAGAGGAGGCTTGGTTAAAACGGACTGGTCAAAGGCACCGTTCACAGCATACTACAGGAATTTCAATGTCATGGAATCGAAAACATCCAATTCCTTCGCTGAGTGGCATACCAATGCGCTTGATGCTCCCAGCAGAAGACGTCTCAGATGGGTTCAGAAATATTTCATGATTTACAACTATTGCACCGACTTAAAACGCTTCCCACAAGGCCCTCCAGTTGAGTGCAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

278

Amino Acids

31.64

Weight (kDa)

9.28

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 742
AccB1I GGYRCC 2 cut(s) 263, 634
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 739
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 3 cut(s) 112, 456, 591
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 139, 511, 664
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 57, 151, 235, 241
AluI AGCT 4 cut(s) 57, 151, 235, 241
Alw26I GTCTC 2 cut(s) 162, 746
AlwI GGATC 1 cut(s) 341
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 4 cut(s) 145, 295, 594, 808
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 658
Asp700I GAANNNNTTC 1 cut(s) 761
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 296, 594, 809
BanI GGYRCC 2 cut(s) 263, 634
BbsI GAAGAC 1 cut(s) 742
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 741
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 162, 746
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 236
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 249
BmgT120I GGNCC 3 cut(s) 296, 594, 809
BmiI GGNNCC 2 cut(s) 265, 636
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 601
BmsI GCATC 1 cut(s) 712
BmuI ACTGGG 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 742
BpmI CTGGAG 1 cut(s) 798
BpuEI CTTGAG 3 cut(s) 276, 412, 553
BsaHI GRCGYC 1 cut(s) 739
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 4 cut(s) 431, 461, 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 456, 591
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 3 cut(s) 596, 629, 815
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 683
BseLI CCNNNNNNNGG 3 cut(s) 112, 456, 591
BseMII CTCAG 4 cut(s) 352, 392, 690, 757
BseNI ACTGG 3 cut(s) 596, 629, 815
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 1 cut(s) 244
BseYI CCCAGC 1 cut(s) 728
BshFI GGCC 4 cut(s) 147, 297, 596, 810
BshNI GGYRCC 2 cut(s) 263, 634
BsiSI CCGG 1 cut(s) 261
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 3 cut(s) 112, 456, 591
BsmAI GTCTC 2 cut(s) 162, 746
BsmBI CGTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 4 cut(s) 147, 297, 596, 810
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 1 cut(s) 80
BspANI GGCC 4 cut(s) 147, 297, 596, 810
BspCNI CTCAG 4 cut(s) 351, 391, 691, 756
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 2 cut(s) 265, 636
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 2 cut(s) 263, 634
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 3 cut(s) 596, 629, 815
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 346
BssNI GRCGYC 1 cut(s) 739
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 268, 639
BstACI GRCGYC 1 cut(s) 739
BstAFI CTTAAG 1 cut(s) 236
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 149, 262
BstDEI CTNAG 5 cut(s) 338, 378, 543, 699, 743
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 683
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 162, 746
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 3 cut(s) 77, 238, 722
BstNI CCWGG 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 652
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 742
BsuRI GGCC 4 cut(s) 147, 297, 596, 810
BtsCI GGATG 1 cut(s) 683
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 346
Cac8I GCNNGC 2 cut(s) 149, 262
CaiI CAGNNNCTG 1 cut(s) 154
CciI TCATGA 1 cut(s) 765
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 3 cut(s) 296, 594, 809
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 111, 556, 670, 766
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 5 cut(s) 338, 378, 543, 699, 743
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
Eco130I CCWWGG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 119
EcoO109I RGGNCCY 2 cut(s) 296, 809
EcoO65I GGTNACC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 746
FaeI CATG 4 cut(s) 114, 559, 673, 769
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 110, 555, 669, 765
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 670
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 717
GluI GCNGC 1 cut(s) 233
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 1 cut(s) 798
HaeIII GGCC 4 cut(s) 147, 297, 596, 810
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 739
Hin1II CATG 4 cut(s) 114, 559, 673, 769
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 521, 674
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 2 cut(s) 487, 642
Hpy188I TCNGA 2 cut(s) 746, 756
Hpy188III TCNNGA 4 cut(s) 95, 429, 457, 766
Hpy8I GTNNAC 2 cut(s) 487, 642
Hpy99I CGWCG 2 cut(s) 311, 590
HpyAV CCTTC 1 cut(s) 703
HpyCH4III ACNGT 2 cut(s) 268, 639
HpyCH4IV ACGT 2 cut(s) 354, 739
HpyCH4V TGCA 5 cut(s) 232, 275, 361, 783, 825
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 238, 722
HpyF3I CTNAG 5 cut(s) 338, 378, 543, 699, 743
HpySE526I ACGT 2 cut(s) 354, 739
Hsp92I GRCGYC 1 cut(s) 739
Hsp92II CATG 4 cut(s) 114, 559, 673, 769
HspAI GCGC 1 cut(s) 716
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 730
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 712
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 354, 739
MaeIII GTNAC 2 cut(s) 119, 268
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 469, 747
MluCI AATT 3 cut(s) 404, 658, 688
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 9 cut(s) 110, 137, 213, 298, 436, 552, 596, 599, 822
MroNI GCCGGC 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 761
MseI TTAA 5 cut(s) 62, 237, 420, 615, 791
MslI CAYNNNNRTG 2 cut(s) 366, 711
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 77, 238, 722
NaeI GCCGGC 1 cut(s) 262
NdeII GATC 1 cut(s) 346
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 114, 559, 673, 769
NlaIV GGNNCC 2 cut(s) 265, 636
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 268
PagI TCATGA 1 cut(s) 765
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdiI GCCGGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 761
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 265, 636
PspPI GGNCC 3 cut(s) 296, 594, 809
PstNI CAGNNNCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 366, 711
SaqAI TTAA 5 cut(s) 62, 237, 420, 615, 791
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 3 cut(s) 296, 594, 809
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 249
SfaNI GCATC 1 cut(s) 712
SfcI CTRYAG 1 cut(s) 652
SmiMI CAYNNNNRTG 2 cut(s) 366, 711
SmlI CTYRAG 4 cut(s) 236, 291, 427, 568
SmoI CTYRAG 4 cut(s) 236, 291, 427, 568
Sse9I AATT 3 cut(s) 404, 658, 688
SsiI CCGC 1 cut(s) 80
SspI AATATT 2 cut(s) 135, 761
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 268, 639
TaiI ACGT 2 cut(s) 357, 742
TaqI TCGA 3 cut(s) 315, 321, 677
TasI AATT 3 cut(s) 404, 658, 688
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 5 cut(s) 62, 237, 420, 615, 791
Tru9I TTAA 5 cut(s) 62, 237, 420, 615, 791
TscAI CASTG 2 cut(s) 277, 346
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 754
TspGWI ACGGA 2 cut(s) 439, 635
TspRI CASTG 2 cut(s) 277, 346
Vha464I CTTAAG 1 cut(s) 236
XapI RAATTY 1 cut(s) 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XmnI GAANNNNTTC 1 cut(s) 761
XspI CTAG 1 cut(s) 12
ZraI GACGTC 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.