Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Reverse (-)

12579655 .. 12580721

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1139900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTTCTTCTAAGGTCTCGATGATGTTTTTTCTTTCTTTGATCACAATTTCTCTGGTGGCCGTGGTTGCCTCAGCCGATAATTTCTATCAAGACTTTGAGGTTATGTTCGGCGATCAACTTGCCAAGGTACTCGAAAATGGACAACTTGTCACCCTCTCCCTTGACAAATCCTCTGGAGCAGGTTTCAAATCCAAGAATGAGTACTTATTTGGAAGGTTTGATATGCAAATCAAGTTGCAACCTGGAAACTCAGCTGGTACTGTCACCACATTTTGTTTATCTTCCTCGGGTTCAAATCATGATGAGATTGACTTTGAGTTTCTGGGCAACTCAACTGGGGAACCCTACACTATCCATACTAATGTCTACGCCCAAGGACAAGGGCTCAAGGAACAACAATTCCGCGTATGGTTCGATCCCACTCAGGACTTCCACACATACTCCGTTGTTTGGAACACCAAGCGCATTATATTCTTGGTGGATAATAGTCCAATTAGAGTGTTCAACAACTTGGAATCAATTGGTCTTCCATTCCCTAAAAACCAACCCATGAGGATTTATGCAACTTTTTGGAATGCCGATCACTGGGCAACACAAGGTGGGCATGTGAGGACTGACTGGAGCCTAGCTCCTTTCACTGCCTCTTACAGAAACCTCAACATAAACGCTTGCCTTGGGTCACAAGGACCATCTTGTGCCTCCACATCTACCAATAGGTCAGCGGATGGTGCTTCATGGGCAAACCAAGGGCTCAATGCTGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

257

Amino Acids

28.34

Weight (kDa)

5.51

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	30 - 209	6.3e-63	Glycosyl hydrolases family 16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	408
AciI	CCGC	2 cut(s)	406, 725
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	132, 206, 262
AfiI	CCNNNNNNNGG	2 cut(s)	453, 588
AgsI	TTSAA	3 cut(s)	190, 297, 508
AhdI	GACNNNNNGTC	1 cut(s)	149
AjnI	CCWGG	1 cut(s)	244
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	2 cut(s)	257, 632
AluI	AGCT	2 cut(s)	257, 632
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	145, 259
AvaI	CYCGRG	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	689
BanII	GRGCYC	2 cut(s)	390, 756
BbsI	GAAGAC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	748
BccI	CCATC	2 cut(s)	700, 722
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	246
BclI	TGATCA	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	173
BisI	GCNGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	763
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	689
BmeRI	GACNNNNNGTC	1 cut(s)	149
BmeT110I	CYCGRG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	345, 626
BmrFI	CCNGG	1 cut(s)	246
BmrI	ACTGGG	2 cut(s)	348, 598
BmuI	ACTGGG	2 cut(s)	348, 598
BpiI	GAAGAC	1 cut(s)	521
BplI	GAGNNNNNCTC	2 cut(s)	616, 648
BpmI	CTGGAG	2 cut(s)	198, 643
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	6 cut(s)	63, 126, 288, 376, 676, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 588
Bse1I	ACTGG	3 cut(s)	343, 593, 626
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	6 cut(s)	63, 126, 288, 376, 676, 748
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	2 cut(s)	453, 588
BseMII	CTCAG	3 cut(s)	87, 267, 440
BseNI	ACTGG	3 cut(s)	343, 593, 626
BseXI	GCAGC	1 cut(s)	748
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	453, 588
BsmAI	GTCTC	1 cut(s)	22
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	390, 756
Bsp143I	GATC	4 cut(s)	42, 115, 418, 583
BspACI	CCGC	2 cut(s)	406, 725
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	86, 266, 439
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	345, 626
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	343, 593, 626
BssECI	CCNNGG	6 cut(s)	63, 126, 288, 376, 676, 748
BssMI	GATC	4 cut(s)	42, 115, 418, 583
BssT1I	CCWWGG	4 cut(s)	126, 376, 676, 748
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	12, 73, 253, 426
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	4 cut(s)	45, 118, 421, 586
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	4 cut(s)	42, 115, 418, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 731, 740
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	762
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	748
BstV2I	GAAGAC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	586, 639
BveI	ACCTGC	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	673
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	3 cut(s)	131, 205, 261
CviAII	CATG	4 cut(s)	302, 553, 608, 738
CviJI	RGCY	7 cut(s)	62, 77, 257, 388, 627, 632, 754
CviKI_1	RGCY	7 cut(s)	62, 77, 257, 388, 627, 632, 754
CviQI	GTAC	3 cut(s)	131, 205, 261
DdeI	CTNAG	4 cut(s)	12, 73, 253, 426
DpnI	GATC	4 cut(s)	44, 117, 420, 585
DpnII	GATC	4 cut(s)	42, 115, 418, 583
DraIII	CACNNNGTG	1 cut(s)	602
DriI	GACNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	149
Eco130I	CCWWGG	4 cut(s)	126, 376, 676, 748
Eco24I	GRGCYC	2 cut(s)	390, 756
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	4 cut(s)	126, 376, 676, 748
EcoT38I	GRGCYC	2 cut(s)	390, 756
ErhI	CCWWGG	4 cut(s)	126, 376, 676, 748
FaeI	CATG	4 cut(s)	305, 556, 611, 741
FatI	CATG	4 cut(s)	301, 552, 607, 737
FbaI	TGATCA	1 cut(s)	42
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	762
FokI	GGATG	1 cut(s)	740
FriOI	GRGCYC	2 cut(s)	390, 756
Fsp4HI	GCNGC	1 cut(s)	762
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	198, 643
HaeIII	GGCC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	4 cut(s)	305, 556, 611, 741
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HinfI	GANTC	1 cut(s)	518
HphI	GGTGA	2 cut(s)	145, 259
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188III	TCNNGA	5 cut(s)	19, 92, 177, 302, 428
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	229, 241, 566, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 731, 740
HpyF3I	CTNAG	4 cut(s)	12, 73, 253, 426
Hsp92II	CATG	4 cut(s)	305, 556, 611, 741
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	42, 115, 418, 583
LmnI	GCTCC	3 cut(s)	179, 624, 637
Lsp1109I	GCAGC	1 cut(s)	748
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	151, 265, 681
MalI	GATC	4 cut(s)	44, 117, 420, 585
MboI	GATC	4 cut(s)	42, 115, 418, 583
MboII	GAAGA	2 cut(s)	276, 521
MfeI	CAATTG	1 cut(s)	522
MhlI	GDGCHC	2 cut(s)	390, 756
MluCI	AATT	5 cut(s)	48, 82, 401, 495, 522
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	2 cut(s)	257, 725
MspR9I	CCNGG	1 cut(s)	246
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	3 cut(s)	68, 731, 740
NdeII	GATC	4 cut(s)	42, 115, 418, 583
NlaIII	CATG	4 cut(s)	305, 556, 611, 741
NlaIV	GGNNCC	2 cut(s)	345, 626
NmuCI	GTSAC	3 cut(s)	151, 265, 681
NspI	RCATGY	1 cut(s)	611
PagI	TCATGA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	763
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	345, 626
PspPI	GGNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	132, 206, 262
RsaNI	GTAC	3 cut(s)	131, 205, 261
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	1 cut(s)	762
Sau3AI	GATC	4 cut(s)	42, 115, 418, 583
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	390, 756
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	5 cut(s)	48, 82, 401, 495, 522
SsiI	CCGC	2 cut(s)	406, 725
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	4 cut(s)	126, 376, 676, 748
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	20, 135, 417
TasI	AATT	5 cut(s)	48, 82, 401, 495, 522
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	518
TscAI	CASTG	2 cut(s)	593, 646
TseFI	GTSAC	3 cut(s)	151, 265, 681
TseI	GCWGC	1 cut(s)	761
Tsp45I	GTSAC	3 cut(s)	151, 265, 681
TspDTI	ATGAA	1 cut(s)	726
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	593, 646
VpaK11BI	GGWCC	1 cut(s)	689
XceI	RCATGY	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	369
XspI	CTAG	1 cut(s)	629
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.