AT4G14130

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000406
Physical Location & Seq
Reverse (-)
8137020 .. 8138392
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14130.1

Sequence Viewer

Length: 870 bp
ATGGGTCCAAGTTCGAGCCTCACCACCATCGTGGCGACTGTTCTTCTTGTGACATTGTTCGGTTCGGCCTACGCAAGCAACTTCTTCGACGAGTTTGACCTCACTTGGGGTGACCACAGAGGCAAAATCTTCAACGGAGGAAATATGCTGTCTTTGTCGCTGGACCAGGTTTCCGGGTCAGGTTTCAAATCCAAAAAAGAGTATTTGTTCGGTCGGATCGATATGCAGCTCAAACTTGTCGCCGGAAACTCGGCCGGCACCGTCACTGCTTACTACTTGTCTTCACAAGGAGCAACACATGACGAGATAGACTTTGAGTTTCTAGGTAACGAGACAGGGAAGCCTTATGTTCTTCACACCAATGTCTTTGCTCAAGGGAAAGGAGACAGAGAGCAACAGTTTTATCTCTGGTTCGACCCAACCAAGAACTTCCACACTTACTCCATTGTCTGGAGACCCCAACACATCATATTCTTGGTGGACAATTTACCCATTAGAGTGTTCAACAATGCAGAGAAGCTCGGCGTTCCTTTCCCAAAGAGTCAACCCATGAGGATCTACTCTAGCCTGTGGAATGCAGACGATTGGGCCACGAGAGGTGGTCTAGTCAAGACTGACTGGTCCAAGGCTCCTTTCACAGCTTACTACAGAGGATTCAACGCTGCGGCTTGCACAGCCTCTTCAGGATGTGACCCTAAATTCAAGAGTTCTTTTGGTGATGGTAAATTGCAAGTGGCAACCGAGCTCAATGCTTATGGCAGGAGGAGACTCAGATGGGTTCAGAAATACTTCATGATCTATAATTATTGCTCTGATCTCAAAAGGTTCCCTCGTGGATTCCCTCCAGAATGCAAGAAGTCCAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

289

Amino Acids

32.69

Weight (kDa)

9.29

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 30 - 209 4.2e-67 Glycosyl hydrolases family 16
XET_C PF06955 247 - 284 5.1e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 619
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 450
AciI CCGC 1 cut(s) 665
AclWI GGATC 2 cut(s) 224, 563
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 1 cut(s) 666
AfiI CCNNNNNNNGG 2 cut(s) 106, 450
AgsI TTSAA 5 cut(s) 133, 187, 505, 658, 703
AjnI CCWGG 1 cut(s) 165
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 4 cut(s) 229, 520, 641, 745
AluI AGCT 4 cut(s) 229, 520, 641, 745
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 4 cut(s) 326, 378, 448, 760
AlwI GGATC 2 cut(s) 224, 563
AlwNI CAGNNNCTG 1 cut(s) 867
AoxI GGCC 3 cut(s) 66, 252, 588
ApeKI GCWGC 2 cut(s) 226, 662
ApoI RAATTY 1 cut(s) 698
Asp700I GAANNNNTTC 1 cut(s) 788
AspS9I GGNCC 4 cut(s) 5, 163, 588, 621
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 13, 122, 728
AvaII GGWCC 3 cut(s) 5, 163, 621
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 747
BauI CACGAG 2 cut(s) 592, 831
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 238, 649
BccI CCATC 3 cut(s) 35, 713, 768
BcgI CGANNNNNNTGC 4 cut(s) 67, 101, 731, 765
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 4 cut(s) 326, 378, 448, 760
BfaI CTAG 3 cut(s) 323, 564, 605
BfmI CTRYAG 1 cut(s) 646
BisI GCNGC 3 cut(s) 227, 663, 666
BlsI GCNGC 3 cut(s) 228, 664, 667
Bme1390I CCNGG 2 cut(s) 167, 175
Bme18I GGWCC 3 cut(s) 5, 163, 621
BmgT120I GGNCC 4 cut(s) 5, 163, 588, 621
BmiI GGNNCC 4 cut(s) 6, 259, 630, 827
BmrFI CCNGG 2 cut(s) 167, 175
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 2 cut(s) 472, 828
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 175
Bsa29I ATCGAT 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 624
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 450
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 623
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 624
BseGI GGATG 1 cut(s) 692
BseLI CCNNNNNNNGG 2 cut(s) 106, 450
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 1 cut(s) 623
BseRI GAGGAG 1 cut(s) 778
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 2 cut(s) 238, 649
Bsh1285I CGRYCG 2 cut(s) 214, 255
BshFI GGCC 3 cut(s) 68, 254, 590
BshNI GGYRCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 219
BsiEI CGRYCG 2 cut(s) 214, 255
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 3 cut(s) 174, 243, 255
BslI CCNNNNNNNGG 2 cut(s) 106, 450
BsmAI GTCTC 4 cut(s) 326, 378, 448, 760
BsmI GAATGC 2 cut(s) 580, 854
BsnI GGCC 3 cut(s) 68, 254, 590
Bso31I GGTCTC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 4 cut(s) 216, 555, 795, 814
BspACI CCGC 1 cut(s) 665
BspANI GGCC 3 cut(s) 68, 254, 590
BspCNI CTCAG 1 cut(s) 783
BspDI ATCGAT 1 cut(s) 219
BspHI TCATGA 1 cut(s) 792
BspLI GGNNCC 4 cut(s) 6, 259, 630, 827
BspPI GGATC 2 cut(s) 224, 563
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 448
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 1 cut(s) 623
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 624
BssMI GATC 4 cut(s) 216, 555, 795, 814
BssSI CACGAG 2 cut(s) 592, 831
BssT1I CCWWGG 1 cut(s) 624
Bst2BI CACGAG 2 cut(s) 592, 831
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 40, 262, 399
Bst6I CTCTTC 1 cut(s) 685
BstC8I GCNNGC 3 cut(s) 76, 256, 670
BstDEI CTNAG 1 cut(s) 770
BstEII GGTNACC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 692
BstKTI GATC 4 cut(s) 219, 558, 798, 817
BstMAI GTCTC 4 cut(s) 326, 378, 448, 760
BstMBI GATC 4 cut(s) 216, 555, 795, 814
BstMCI CGRYCG 2 cut(s) 214, 255
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 165, 173
BstSFI CTRYAG 1 cut(s) 646
BstV1I GCAGC 2 cut(s) 238, 649
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 555
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 555
BstZI CGGCCG 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 219
BsuRI GGCC 3 cut(s) 68, 254, 590
BsuTUI ATCGAT 1 cut(s) 219
BtsCI GGATG 1 cut(s) 692
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 76, 256, 670
CaiI CAGNNNCTG 1 cut(s) 867
CciI TCATGA 1 cut(s) 792
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 5, 163, 588, 621
ClaI ATCGAT 1 cut(s) 219
CsiI ACCWGGT 1 cut(s) 165
CviAII CATG 3 cut(s) 299, 550, 793
DdeI CTNAG 1 cut(s) 770
DpnI GATC 4 cut(s) 218, 557, 797, 816
DpnII GATC 4 cut(s) 216, 555, 795, 814
DrdI GACNNNNNNGTC 1 cut(s) 619
DseDI GACNNNNNNGTC 1 cut(s) 619
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
Ecl136II GAGCTC 1 cut(s) 745
EclXI CGGCCG 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 5, 163, 621
Eco52I CGGCCG 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 745
Eco57I CTGAAG 1 cut(s) 666
Eco91I GGTNACC 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 745
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 3 cut(s) 302, 553, 796
FaiI YATR 9 cut(s) 146, 224, 300, 348, 470, 551, 756, 794, 801
FatI CATG 3 cut(s) 298, 549, 792
Fnu4HI GCNGC 3 cut(s) 227, 663, 666
FokI GGATG 1 cut(s) 699
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 3 cut(s) 227, 663, 666
FspBI CTAG 3 cut(s) 323, 564, 605
GluI GCNGC 3 cut(s) 227, 663, 666
GsuI CTGGAG 2 cut(s) 472, 828
HaeIII GGCC 3 cut(s) 68, 254, 590
HapII CCGG 3 cut(s) 174, 243, 255
Hin1II CATG 3 cut(s) 302, 553, 796
HincII GTYRAC 1 cut(s) 545
HindII GTYRAC 1 cut(s) 545
HinfI GANTC 5 cut(s) 541, 654, 768, 837, 864
HpaII CCGG 3 cut(s) 174, 243, 255
HphI GGTGA 3 cut(s) 13, 122, 728
Hpy166II GTNNAC 2 cut(s) 481, 545
Hpy188I TCNGA 5 cut(s) 216, 773, 783, 814, 869
Hpy188III TCNNGA 7 cut(s) 451, 610, 684, 703, 793, 845, 861
Hpy8I GTNNAC 2 cut(s) 481, 545
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 3 cut(s) 40, 262, 399
HpyCH4V TGCA 6 cut(s) 226, 512, 578, 672, 730, 852
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 1 cut(s) 770
Hsp92II CATG 3 cut(s) 302, 553, 796
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Kzo9I GATC 4 cut(s) 216, 555, 795, 814
LmnI GCTCC 2 cut(s) 290, 634
Lsp1109I GCAGC 2 cut(s) 238, 649
MabI ACCWGGT 1 cut(s) 165
MaeI CTAG 3 cut(s) 323, 564, 605
MaeIII GTNAC 5 cut(s) 49, 110, 262, 326, 689
MalI GATC 4 cut(s) 218, 557, 797, 816
MboI GATC 4 cut(s) 216, 555, 795, 814
MboII GAAGA 6 cut(s) 35, 76, 121, 273, 344, 672
MflI RGATCY 1 cut(s) 555
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 4 cut(s) 484, 698, 725, 802
MlyI GAGTC 2 cut(s) 550, 762
MmeI TCCRAC 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 788
MslI CAYNNNNRTG 3 cut(s) 29, 360, 497
MspI CCGG 3 cut(s) 174, 243, 255
MspR9I CCNGG 2 cut(s) 167, 175
Mva1269I GAATGC 2 cut(s) 580, 854
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 674
NaeI GCCGGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 175
NdeII GATC 4 cut(s) 216, 555, 795, 814
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 3 cut(s) 302, 553, 796
NlaIV GGNNCC 4 cut(s) 6, 259, 630, 827
NmeAIII GCCGAG 2 cut(s) 230, 501
NmuCI GTSAC 4 cut(s) 49, 110, 262, 689
OliI CACNNNNGTG 1 cut(s) 29
PagI TCATGA 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 2 cut(s) 580, 854
PdiI GCCGGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 2 cut(s) 654, 837
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 3 cut(s) 228, 664, 667
PleI GAGTC 2 cut(s) 549, 762
PpsI GAGTC 2 cut(s) 549, 762
Psp124BI GAGCTC 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 4 cut(s) 6, 259, 630, 827
PspPI GGNCC 4 cut(s) 5, 163, 588, 621
PstNI CAGNNNCTG 1 cut(s) 867
PsuI RGATCY 1 cut(s) 555
RseI CAYNNNNRTG 3 cut(s) 29, 360, 497
SacI GAGCTC 1 cut(s) 747
SatI GCNGC 3 cut(s) 227, 663, 666
Sau3AI GATC 4 cut(s) 216, 555, 795, 814
Sau96I GGNCC 4 cut(s) 5, 163, 588, 621
SchI GAGTC 2 cut(s) 550, 762
ScrFI CCNGG 2 cut(s) 167, 175
SduI GDGCHC 1 cut(s) 747
SexAI ACCWGGT 1 cut(s) 165
SfcI CTRYAG 1 cut(s) 646
SinI GGWCC 3 cut(s) 5, 163, 621
SmiMI CAYNNNNRTG 3 cut(s) 29, 360, 497
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 4 cut(s) 484, 698, 725, 802
SsiI CCGC 1 cut(s) 665
SspMI CTAG 3 cut(s) 323, 564, 605
SstI GAGCTC 1 cut(s) 747
StyD4I CCNGG 2 cut(s) 165, 173
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 3 cut(s) 40, 262, 399
TaqI TCGA 4 cut(s) 14, 87, 219, 414
TaqII GACCGA 1 cut(s) 200
TasI AATT 4 cut(s) 484, 698, 725, 802
TauI GCSGC 1 cut(s) 668
TfiI GAWTC 2 cut(s) 654, 837
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 4 cut(s) 49, 110, 262, 689
TseI GCWGC 2 cut(s) 226, 662
Tsp45I GTSAC 4 cut(s) 49, 110, 262, 689
TspDTI ATGAA 1 cut(s) 781
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 3 cut(s) 5, 163, 621
XapI RAATTY 1 cut(s) 698
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 3 cut(s) 323, 564, 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.