Rw2G039860

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
65346202 .. 65347496
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039860.1

Sequence Viewer

Length: 810 bp
ATGTCTTCTTGTAAGGTTTCCATGGTGCTTCTTCTTTCTTTGTTCATAGCTTCTATTCTAGCCATGACTGCCTTAGCTGGCAATTTCTTTCAAGATTTTGACATCACTTTTGGAGATCAACGCGTTAAAATACTCGAAGGAGGAAAGTTTCTCACGCTCAACCTCGACCAGTATTCTGGCTCTGGTTTCAAATCCAAGAACGAGTACTTATTCGGAAGGATCGACATGCAAATCAAACTTGTGCCTGGAAACTCAGCTGGCACTGTCACTACATACTATTTATCTTCTGAAGGTCCAACTCATGATGAAATCGACTTCGAGTTTTTGGGCAACTCATCTGGAGATCCCTACACTCTCCACACCAATGTATTCAGTCAGGGAAAAGGGGACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAAAGGCCTTCCACACCTACTCATTTGTCTGGAACTCCAAACGCATTATATTCTTTGTCGACAACATTCCAATCCGAGTGTTCAACAACTTGGAATCATTTGGTGTTCCATTCCCCAAAAACCAACCAATGAGGATTTACTCGAGTCTAAATTTCAAGGCCAATGCTTGTGCTGCTGGCTCATCATCCTCTTGCATTGTCTCCACCACTGCATCAACTAATTCCCTAACAGATCAACAGAGTGGATGGCAGACTCAAACGCTTGATGCTGCAGGCCGAAACAGGCTTCGATGGGTGCAACACAAGTTCATGGTGTACAACTACTGCTCTGACCTCAAACGATTCCCTCAAGGCGTACCAGCCGAGTGCAGGCGATCAAGGTTCTAG

Protein Analysis

269

Amino Acids

30.35

Weight (kDa)

8.76

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 31 - 191 6.4e-56 Glycosyl hydrolases family 16
XET_C PF06955 221 - 264 2e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 123
AclWI GGATC 3 cut(s) 227, 338, 413
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 3 cut(s) 206, 740, 780
AfiI CCNNNNNNNGG 1 cut(s) 792
AflIII ACRYGT 1 cut(s) 121
AgsI TTSAA 4 cut(s) 92, 190, 508, 580
AjnI CCWGG 1 cut(s) 244
AloI GAACNNNNNNTCC 2 cut(s) 387, 419
AluBI AGCT 3 cut(s) 50, 77, 257
AluI AGCT 3 cut(s) 50, 77, 257
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 3 cut(s) 227, 338, 413
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 3 cut(s) 429, 582, 697
ApeKI GCWGC 2 cut(s) 596, 692
ApoI RAATTY 1 cut(s) 574
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 565
AvaII GGWCC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 583, 679
BccI CCATC 3 cut(s) 414, 663, 708
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 2 cut(s) 59, 808
BfmI CTRYAG 1 cut(s) 693
BisI GCNGC 2 cut(s) 597, 693
BlsI GCNGC 2 cut(s) 598, 694
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 644, 679
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 756
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 792
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 608, 674
BseLI CCNNNNNNNGG 1 cut(s) 792
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 2 cut(s) 583, 679
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 431, 584, 699
BsiHKCI CYCGRG 1 cut(s) 565
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 792
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 3 cut(s) 431, 584, 699
BsoBI CYCGRG 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 738
Bsp143I GATC 6 cut(s) 115, 219, 343, 418, 655, 797
Bsp19I CCATGG 1 cut(s) 21
BspANI GGCC 3 cut(s) 431, 584, 699
BspCNI CTCAG 1 cut(s) 266
BspFNI CGCG 1 cut(s) 123
BspHI TCATGA 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 3 cut(s) 227, 338, 413
BsrGI TGTACA 1 cut(s) 738
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 6 cut(s) 115, 219, 343, 418, 655, 797
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 738
BstC8I GCNNGC 5 cut(s) 79, 259, 601, 697, 794
BstDEI CTNAG 2 cut(s) 73, 253
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 2 cut(s) 608, 674
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 6 cut(s) 118, 222, 346, 421, 658, 800
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 6 cut(s) 115, 219, 343, 418, 655, 797
BstMWI GCNNNNNNNGC 2 cut(s) 68, 596
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 583, 679
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 3 cut(s) 431, 584, 699
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 2 cut(s) 608, 674
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 261, 630
Cac8I GCNNGC 5 cut(s) 79, 259, 601, 697, 794
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 205, 739, 779
CviAII CATG 5 cut(s) 22, 64, 226, 302, 733
CviQI GTAC 3 cut(s) 205, 739, 779
DdeI CTNAG 2 cut(s) 73, 253
DpnI GATC 6 cut(s) 117, 221, 345, 420, 657, 799
DpnII GATC 6 cut(s) 115, 219, 343, 418, 655, 797
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 5 cut(s) 25, 67, 229, 305, 736
FaiI YATR 8 cut(s) 23, 47, 65, 227, 274, 303, 473, 734
FaqI GGGAC 1 cut(s) 401
FatI CATG 5 cut(s) 21, 63, 225, 301, 732
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 2 cut(s) 597, 693
FokI GGATG 2 cut(s) 595, 681
Fsp4HI GCNGC 2 cut(s) 597, 693
FspBI CTAG 2 cut(s) 59, 808
GluI GCNGC 2 cut(s) 597, 693
GsuI CTGGAG 1 cut(s) 360
HaeIII GGCC 3 cut(s) 431, 584, 699
Hin1II CATG 5 cut(s) 25, 67, 229, 305, 736
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 518, 568, 676, 765
Hpy166II GTNNAC 2 cut(s) 484, 739
Hpy188I TCNGA 4 cut(s) 215, 289, 500, 754
Hpy188III TCNNGA 4 cut(s) 92, 302, 339, 454
Hpy8I GTNNAC 2 cut(s) 484, 739
HpyAV CCTTC 4 cut(s) 131, 210, 284, 442
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 6 cut(s) 229, 618, 635, 695, 721, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 596
HpyF3I CTNAG 2 cut(s) 73, 253
Hsp92II CATG 5 cut(s) 25, 67, 229, 305, 736
Kzo9I GATC 6 cut(s) 115, 219, 343, 418, 655, 797
Lsp1109I GCAGC 2 cut(s) 583, 679
LweI GCATC 2 cut(s) 644, 679
MaeI CTAG 2 cut(s) 59, 808
MaeIII GTNAC 1 cut(s) 265
MalI GATC 6 cut(s) 117, 221, 345, 420, 657, 799
MboI GATC 6 cut(s) 115, 219, 343, 418, 655, 797
MboII GAAGA 2 cut(s) 23, 276
MflI RGATCY 1 cut(s) 343
MluCI AATT 4 cut(s) 82, 401, 574, 643
MluI ACGCGT 1 cut(s) 121
MlyI GAGTC 2 cut(s) 577, 670
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 6 cut(s) 134, 173, 549, 622, 767, 780
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 68, 596
NcoI CCATGG 1 cut(s) 21
NdeII GATC 6 cut(s) 115, 219, 343, 418, 655, 797
NlaIII CATG 5 cut(s) 25, 67, 229, 305, 736
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 229
PaeR7I CTCGAG 1 cut(s) 565
PagI TCATGA 1 cut(s) 301
PceI AGGCCT 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 2 cut(s) 518, 765
PkrI GCNGC 2 cut(s) 598, 694
PleI GAGTC 2 cut(s) 576, 670
PpsI GAGTC 2 cut(s) 576, 670
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 565
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 3 cut(s) 206, 740, 780
RsaNI GTAC 3 cut(s) 205, 739, 779
RseI CAYNNNNRTG 1 cut(s) 363
SalI GTCGAC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 597, 693
Sau3AI GATC 6 cut(s) 115, 219, 343, 418, 655, 797
Sau96I GGNCC 1 cut(s) 293
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 577, 670
ScrFI CCNGG 1 cut(s) 246
SetI ASST 9 cut(s) 18, 52, 79, 165, 259, 295, 443, 759, 806
SfaNI GCATC 2 cut(s) 644, 679
SfcI CTRYAG 1 cut(s) 693
Sfr274I CTCGAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 293
SlaI CTCGAG 1 cut(s) 565
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 565, 771
SmoI CTYRAG 2 cut(s) 565, 771
Sse9I AATT 4 cut(s) 82, 401, 574, 643
SseBI AGGCCT 1 cut(s) 431
SspMI CTAG 2 cut(s) 59, 808
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 8 cut(s) 135, 165, 222, 312, 318, 483, 566, 712
TasI AATT 4 cut(s) 82, 401, 574, 643
TatI WGTACW 2 cut(s) 204, 738
TfiI GAWTC 2 cut(s) 518, 765
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 268, 637
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 596, 692
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 34, 321, 721
TspRI CASTG 2 cut(s) 268, 637
VpaK11BI GGWCC 1 cut(s) 293
XapI RAATTY 1 cut(s) 574
XceI RCATGY 1 cut(s) 229
XhoI CTCGAG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 59, 808
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.