Prupe.3G172100_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19033880 .. 19036419
2540 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G172100.1

Sequence Viewer

Length: 810 bp
ATGGCTGCCTTAGCTGGTAATTTCTATCAGGACTTTGACATTATGTTCGGCGATCAACGTCTTAAGATACTCGAGGAAGGAAAACTTGTCACGCTCTCCCTTGACAAGGTTTCTGGCGCTGGTTTCCAGTCCAAAAATGGATATATATTTGGAAGGTTTGATGTGCAAATGAAGATGCCACCTGGGAACTCAGCTGGTACTGTCACCACATTCTATTTATCTTCTTCAGGTCCAAATCATGATGAGATTGACCTGGAGTTTCTGGGCAACTCCACTGGGGAGCCCTACACTCTCCATACTAATGTCTACGCCCAAGGGCAGGGGTCCAAGGAACAACAATTCCACCTATGGTTTGATCCCACAAAGGACTTCCACACCTACTCCGTTGTTTGGAACAGCAAGCGCATTATATTCTTGGTGGATGGAAGTCCAATTAGAGTGTTCAACAACTTGGAATCACTTGGCCTTCCATTTCCTAAAAATCAATCCATGAAGATTTATGCAACTTTCTGGAATGCTGATGACTGGGCAACACAAGGTGGGCGTGTGAAGACTGACTGGAGCCATGCTCCTTTCTCTGCCTCCTACAGAAACTTCAACATCAATGCTTGCCTTGGGTCAGAAGAATCACCATCATCATCTTGCTCTACATCTACCAATTCCTCAGCATGGCAGAACCAAGGGCTTAATGCTGCAGGCCGGAACAGACTTCGATGGTTGCAACGCAAGTTCATGGTCTATGACTACTGCACTGACCGTCCTAAGTTCCCGAAAGGTCTCCCACGCGAATGCAAGCATTCGAGGGTCTAG

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

8.58

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 306
AccII CGCG 1 cut(s) 786
AclWI GGATC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 539
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 4 cut(s) 106, 319, 390, 669
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 445, 598
AjnI CCWGG 2 cut(s) 181, 252
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 2 cut(s) 14, 194
AluI AGCT 2 cut(s) 14, 194
Alw26I GTCTC 1 cut(s) 782
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 463, 697
ApeKI GCWGC 2 cut(s) 5, 692
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AspLEI GCGC 2 cut(s) 119, 405
AspS9I GGNCC 2 cut(s) 230, 324
AsuHPI GGTGA 2 cut(s) 196, 621
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 230, 324
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 557
BbvCI CCTCAGC 1 cut(s) 664
BbvI GCAGC 1 cut(s) 679
BccI CCATC 3 cut(s) 416, 640, 708
BciT130I CCWGG 2 cut(s) 183, 254
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 1 cut(s) 808
BfmI CTRYAG 2 cut(s) 586, 693
BfoI RGCGCY 1 cut(s) 120
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 2 cut(s) 6, 693
BlsI GCNGC 2 cut(s) 7, 694
Bme1390I CCNGG 2 cut(s) 183, 254
Bme18I GGWCC 2 cut(s) 230, 324
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 230, 324
BmiI GGNNCC 3 cut(s) 282, 325, 563
BmrFI CCNGG 2 cut(s) 183, 254
BmrI ACTGGG 2 cut(s) 285, 535
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 2 cut(s) 285, 535
BpiI GAAGAC 1 cut(s) 557
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpmI CTGGAG 2 cut(s) 275, 580
Bpu10I CCTNAGC 2 cut(s) 10, 664
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 5 cut(s) 182, 313, 327, 613, 679
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 319, 390, 669
Bse1I ACTGG 4 cut(s) 127, 280, 530, 563
BseBI CCWGG 2 cut(s) 183, 254
BseDI CCNNGG 5 cut(s) 182, 313, 327, 613, 679
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 4 cut(s) 106, 319, 390, 669
BseMII CTCAG 2 cut(s) 204, 678
BseNI ACTGG 4 cut(s) 127, 280, 530, 563
BseXI GCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 786
BshFI GGCC 2 cut(s) 465, 699
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 700
BslI CCNNNNNNNGG 4 cut(s) 106, 319, 390, 669
BsmAI GTCTC 1 cut(s) 782
BsmI GAATGC 3 cut(s) 520, 794, 796
BsnI GGCC 2 cut(s) 465, 699
Bso31I GGTCTC 1 cut(s) 782
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 2 cut(s) 52, 355
BspANI GGCC 2 cut(s) 465, 699
BspCNI CTCAG 2 cut(s) 203, 677
BspFNI CGCG 1 cut(s) 786
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 282, 325, 563
BspMAI CTGCAG 1 cut(s) 697
BspPI GGATC 1 cut(s) 350
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 782
BsrI ACTGG 4 cut(s) 127, 280, 530, 563
BssECI CCNNGG 5 cut(s) 182, 313, 327, 613, 679
BssMI GATC 2 cut(s) 52, 355
BssT1I CCWWGG 4 cut(s) 313, 327, 613, 679
Bst2UI CCWGG 2 cut(s) 183, 254
Bst4CI ACNGT 2 cut(s) 202, 758
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 401, 610, 697, 794
BstDEI CTNAG 4 cut(s) 10, 190, 664, 762
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 1 cut(s) 786
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 2 cut(s) 119, 405
BstKTI GATC 2 cut(s) 55, 358
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 2 cut(s) 52, 355
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 2 cut(s) 183, 254
BstSCI CCNGG 2 cut(s) 181, 252
BstSFI CTRYAG 2 cut(s) 586, 693
BstUI CGCG 1 cut(s) 786
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 557
BsuRI GGCC 2 cut(s) 465, 699
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 273, 750
Cac8I GCNNGC 4 cut(s) 401, 610, 697, 794
CciI TCATGA 1 cut(s) 238
CfoI GCGC 2 cut(s) 119, 405
Cfr13I GGNCC 2 cut(s) 230, 324
Csp6I GTAC 1 cut(s) 198
CviAII CATG 5 cut(s) 239, 490, 566, 669, 733
CviJI RGCY 8 cut(s) 5, 14, 194, 283, 465, 564, 685, 699
CviKI_1 RGCY 8 cut(s) 5, 14, 194, 283, 465, 564, 685, 699
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 4 cut(s) 10, 190, 664, 762
DpnI GATC 2 cut(s) 54, 357
DpnII GATC 2 cut(s) 52, 355
DraIII CACNNNGTG 1 cut(s) 539
Eco130I CCWWGG 4 cut(s) 313, 327, 613, 679
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 230, 324
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoRII CCWGG 2 cut(s) 181, 252
EcoT14I CCWWGG 4 cut(s) 313, 327, 613, 679
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 4 cut(s) 313, 327, 613, 679
FaeI CATG 5 cut(s) 242, 493, 569, 672, 736
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FatI CATG 5 cut(s) 238, 489, 565, 668, 732
FblI GTMKAC 1 cut(s) 306
Fnu4HI GCNGC 2 cut(s) 6, 693
FokI GGATG 1 cut(s) 434
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 6, 693
FspBI CTAG 1 cut(s) 808
GlaI GCGC 2 cut(s) 118, 404
GluI GCNGC 2 cut(s) 6, 693
GsuI CTGGAG 2 cut(s) 275, 580
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 2 cut(s) 465, 699
HapII CCGG 1 cut(s) 700
HhaI GCGC 2 cut(s) 119, 405
Hin1II CATG 5 cut(s) 242, 493, 569, 672, 736
Hin6I GCGC 2 cut(s) 117, 403
HinP1I GCGC 2 cut(s) 117, 403
HinfI GANTC 2 cut(s) 455, 626
HpaII CCGG 1 cut(s) 700
HphI GGTGA 2 cut(s) 196, 621
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 1 cut(s) 622
Hpy188III TCNNGA 4 cut(s) 29, 239, 511, 769
Hpy8I GTNNAC 1 cut(s) 307
HpyAV CCTTC 3 cut(s) 71, 147, 476
HpyCH4III ACNGT 2 cut(s) 202, 758
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 6 cut(s) 166, 503, 695, 721, 750, 792
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 10, 190, 664, 762
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 5 cut(s) 242, 493, 569, 672, 736
HspAI GCGC 2 cut(s) 117, 403
Kzo9I GATC 2 cut(s) 52, 355
LmnI GCTCC 3 cut(s) 280, 561, 574
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 808
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 88, 202
MalI GATC 2 cut(s) 54, 357
MboI GATC 2 cut(s) 52, 355
MboII GAAGA 6 cut(s) 184, 213, 216, 505, 562, 635
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 4 cut(s) 19, 338, 432, 658
MnlI CCTC 4 cut(s) 67, 592, 673, 795
MseI TTAA 2 cut(s) 63, 687
MslI CAYNNNNRTG 2 cut(s) 300, 787
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 1 cut(s) 700
MspR9I CCNGG 2 cut(s) 183, 254
Mva1269I GAATGC 3 cut(s) 520, 794, 796
MvaI CCWGG 2 cut(s) 183, 254
MvnI CGCG 1 cut(s) 786
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 52, 355
NlaIII CATG 5 cut(s) 242, 493, 569, 672, 736
NlaIV GGNNCC 3 cut(s) 282, 325, 563
NmuCI GTSAC 2 cut(s) 88, 202
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 1 cut(s) 238
PctI GAATGC 3 cut(s) 520, 794, 796
PfeI GAWTC 2 cut(s) 455, 626
PkrI GCNGC 2 cut(s) 7, 694
Psp6I CCWGG 2 cut(s) 181, 252
PspGI CCWGG 2 cut(s) 181, 252
PspN4I GGNNCC 3 cut(s) 282, 325, 563
PspPI GGNCC 2 cut(s) 230, 324
PspXI VCTCGAGB 1 cut(s) 71
PstI CTGCAG 1 cut(s) 697
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 2 cut(s) 300, 787
SaqAI TTAA 2 cut(s) 63, 687
SatI GCNGC 2 cut(s) 6, 693
Sau3AI GATC 2 cut(s) 52, 355
Sau96I GGNCC 2 cut(s) 230, 324
ScrFI CCNGG 2 cut(s) 183, 254
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 1 cut(s) 165
SfcI CTRYAG 2 cut(s) 586, 693
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 2 cut(s) 230, 324
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 300, 787
SmlI CTYRAG 2 cut(s) 62, 71
SmoI CTYRAG 2 cut(s) 62, 71
Sse9I AATT 4 cut(s) 19, 338, 432, 658
SspMI CTAG 1 cut(s) 808
StyD4I CCNGG 2 cut(s) 181, 252
StyI CCWWGG 4 cut(s) 313, 327, 613, 679
TaaI ACNGT 2 cut(s) 202, 758
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 72, 712, 800
TasI AATT 4 cut(s) 19, 338, 432, 658
TfiI GAWTC 2 cut(s) 455, 626
Tru1I TTAA 2 cut(s) 63, 687
Tru9I TTAA 2 cut(s) 63, 687
TscAI CASTG 2 cut(s) 280, 757
TseFI GTSAC 2 cut(s) 88, 202
TseI GCWGC 2 cut(s) 5, 692
Tsp45I GTSAC 2 cut(s) 88, 202
TspDTI ATGAA 3 cut(s) 185, 506, 721
TspGWI ACGGA 1 cut(s) 373
TspRI CASTG 2 cut(s) 280, 757
Vha464I CTTAAG 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 230, 324
XagI CCTNNNNNAGG 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 306
XspI CTAG 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.