Rw2G039890

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
65364455 .. 65366160
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039890.1

Sequence Viewer

Length: 858 bp
ATGGTCATTATGGCCTCTGCTAGTAATTTCTATCAGGACTTTCACATTTTATTCGGTGACCAACGTGCTCAAATACTTGATGGAGGACAACTTCTCACCCTCTCCCAGGACCAGACTTCCGGGTCCGGCTTCATTTCTCAGAACCAATACCTATTTGGACGGTTCGACATGCAAATGAAGCTGGCGCCCGGGAACACTGCTGGTACCGTCACCACATTTTATTTATCATCTTCAGGGTACCATCATGATGAGATTGACTTGGAGTTTCTTGGAAACACATCCGGGAATCCCTACACTCTCAGTACTAATATCTACACGCAGGGAATAGGGGGTAGAGAACAACAATTCCATCTTTGGTTTGATCCCTCCAAAGACTTCCACACTTACTCCGTTGTTTGGAATGTTCATCGCATTATAATCTTTGTGGATAACAGTCCCATTAGGGTTTTCAACAACTTGGAACTACTTCATGTTCCGTTTCCTAAAAGCCAACCCATGGCGATTTACGCCAGTTTCTGGGATGGTGATAGCTGGGCTACACAAGGTGGCCGTGTGAAGACTGACTGGTCTCAAGCTCCTTTCACCGCCTCTTATGGAAGATACAACATCAATGCTTGTCTAGGATCACAGCAGCAAGGTTCATCATCATCATCATATCCATACTCATACACAGACTGTGTTCCCACATCTACCAATTCCTCAAATGTCGACAACTCATGGAGGAATCTAGGGCTTAATGCTGCAGGTCGAAACAGGCTTCGATGGGTTCAAACGAAGTTCATGATCTACAACTACTGCACTGACCGTAATAAGTTTCCCGGTGGTCTGCCACGGGAATGCCAGCATTCCAAGTTCTAG

Protein Analysis

285

Amino Acids

32.24

Weight (kDa)

6.69

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 11 - 190 6.5e-60 Glycosyl hydrolases family 16
XET_C PF06955 238 - 280 1.1e-17 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000406)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23730 AT4G14130
fragaria_vesca FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AasI GACNNNNNNGTC 2 cut(s) 121, 565
Acc36I ACCTGC 1 cut(s) 734
Acc65I GGTACC 2 cut(s) 203, 237
AccB1I GGYRCC 3 cut(s) 184, 203, 237
AccB7I CCANNNNNTGG 2 cut(s) 496, 516
AccI GTMKAC 1 cut(s) 708
AciI CCGC 1 cut(s) 585
AclWI GGATC 2 cut(s) 356, 631
AcoI YGGCCR 1 cut(s) 547
AcuI CTGAAG 1 cut(s) 216
AcyI GRCGYC 1 cut(s) 185
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 3 cut(s) 205, 239, 304
AfiI CCNNNNNNNGG 4 cut(s) 106, 396, 496, 516
AgsI TTSAA 2 cut(s) 451, 770
AjnI CCWGG 1 cut(s) 105
AloI GAACNNNNNNTCC 2 cut(s) 330, 362
AluBI AGCT 3 cut(s) 181, 531, 575
AluI AGCT 3 cut(s) 181, 531, 575
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 2 cut(s) 356, 631
AlwNI CAGNNNCTG 1 cut(s) 516
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 2 cut(s) 12, 547
ApeKI GCWGC 2 cut(s) 631, 740
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 2 cut(s) 203, 237
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 109, 123
AsuC2I CCSGG 5 cut(s) 121, 189, 190, 283, 819
AsuHPI GGTGA 5 cut(s) 68, 88, 202, 536, 574
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 2 cut(s) 109, 123
BanI GGYRCC 3 cut(s) 184, 203, 237
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 70
BbvI GCAGC 2 cut(s) 643, 727
BccI CCATC 5 cut(s) 74, 249, 357, 515, 756
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 5 cut(s) 121, 189, 190, 283, 819
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 4 cut(s) 21, 620, 728, 856
BfmI CTRYAG 1 cut(s) 741
BfoI RGCGCY 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 734
BisI GCNGC 2 cut(s) 632, 741
BlsI GCNGC 2 cut(s) 633, 742
BmcAI AGTACT 1 cut(s) 304
Bme1390I CCNGG 6 cut(s) 107, 121, 189, 190, 283, 819
Bme18I GGWCC 2 cut(s) 109, 123
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 109, 123
BmiI GGNNCC 4 cut(s) 124, 186, 205, 239
BmrFI CCNGG 6 cut(s) 107, 121, 189, 190, 283, 819
BpiI GAAGAC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 5 cut(s) 121, 189, 190, 283, 819
BsaHI GRCGYC 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 4 cut(s) 105, 188, 495, 830
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 396, 496, 516
Bse1I ACTGG 2 cut(s) 510, 569
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 4 cut(s) 105, 188, 495, 830
BseGI GGATG 2 cut(s) 278, 526
BseLI CCNNNNNNNGG 4 cut(s) 106, 396, 496, 516
BseMII CTCAG 2 cut(s) 152, 313
BseNI ACTGG 2 cut(s) 510, 569
BseXI GCAGC 2 cut(s) 643, 727
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 781
BshFI GGCC 2 cut(s) 14, 549
BshNI GGYRCC 3 cut(s) 184, 203, 237
BsiHKAI GWGCWC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 5 cut(s) 120, 126, 189, 282, 819
BslFI GGGAC 1 cut(s) 420
BslI CCNNNNNNNGG 4 cut(s) 106, 396, 496, 516
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 2 cut(s) 842, 844
BsnI GGCC 2 cut(s) 14, 549
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 361, 623, 783
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 1 cut(s) 585
BspANI GGCC 2 cut(s) 14, 549
BspCNI CTCAG 2 cut(s) 151, 312
BspHI TCATGA 2 cut(s) 244, 780
BspLI GGNNCC 4 cut(s) 124, 186, 205, 239
BspMAI CTGCAG 1 cut(s) 745
BspMI ACCTGC 1 cut(s) 734
BspPI GGATC 2 cut(s) 356, 631
BspT107I GGYRCC 3 cut(s) 184, 203, 237
BspTNI GGTCTC 1 cut(s) 573
BsrI ACTGG 2 cut(s) 510, 569
BssECI CCNNGG 4 cut(s) 105, 188, 495, 830
BssMI GATC 3 cut(s) 361, 623, 783
BssNI GRCGYC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 5 cut(s) 162, 208, 434, 677, 806
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 183, 842
BstDEI CTNAG 2 cut(s) 138, 299
BstDSI CCRYGG 2 cut(s) 495, 830
BstEII GGTNACC 1 cut(s) 56
BstENI CCTNNNNNAGG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 278, 526
BstH2I RGCGCY 1 cut(s) 188
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 3 cut(s) 364, 626, 786
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 3 cut(s) 361, 623, 783
BstMWI GCNNNNNNNGC 2 cut(s) 178, 506
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 172
BstPI GGTNACC 1 cut(s) 56
BstSCI CCNGG 6 cut(s) 105, 119, 187, 188, 281, 817
BstSFI CTRYAG 1 cut(s) 741
BstV1I GCAGC 2 cut(s) 643, 727
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 14, 549
BtgI CCRYGG 2 cut(s) 495, 830
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 2 cut(s) 278, 526
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 2 cut(s) 195, 798
BveI ACCTGC 1 cut(s) 734
Cac8I GCNNGC 2 cut(s) 183, 842
CaiI CAGNNNCTG 1 cut(s) 516
CciI TCATGA 2 cut(s) 244, 780
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 2 cut(s) 109, 123
Cfr9I CCCGGG 1 cut(s) 188
Csp6I GTAC 3 cut(s) 204, 238, 303
CviAII CATG 6 cut(s) 169, 245, 470, 496, 717, 781
CviQI GTAC 3 cut(s) 204, 238, 303
DdeI CTNAG 2 cut(s) 138, 299
DinI GGCGCC 1 cut(s) 186
DpnI GATC 3 cut(s) 363, 625, 785
DpnII GATC 3 cut(s) 361, 623, 783
DraIII CACNNNGTG 1 cut(s) 545
DrdI GACNNNNNNGTC 2 cut(s) 121, 565
DseDI GACNNNNNNGTC 2 cut(s) 121, 565
EaeI YGGCCR 1 cut(s) 547
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 573
Eco47I GGWCC 2 cut(s) 109, 123
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 56
EcoNI CCTNNNNNAGG 1 cut(s) 104
EcoO65I GGTNACC 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 495
EgeI GGCGCC 1 cut(s) 186
EheI GGCGCC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 6 cut(s) 172, 248, 473, 499, 720, 784
FaqI GGGAC 1 cut(s) 420
FatI CATG 6 cut(s) 168, 244, 469, 495, 716, 780
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 632, 741
FokI GGATG 2 cut(s) 265, 533
Fsp4HI GCNGC 2 cut(s) 632, 741
FspBI CTAG 4 cut(s) 21, 620, 728, 856
GlaI GCGC 1 cut(s) 186
GluI GCNGC 2 cut(s) 632, 741
GsaI CCCAGC 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 188
HaeIII GGCC 2 cut(s) 14, 549
HapII CCGG 5 cut(s) 120, 126, 189, 282, 819
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 6 cut(s) 172, 248, 473, 499, 720, 784
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 2 cut(s) 286, 724
HpaII CCGG 5 cut(s) 120, 126, 189, 282, 819
HphI GGTGA 5 cut(s) 68, 88, 202, 536, 574
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 1 cut(s) 141
Hpy188III TCNNGA 3 cut(s) 35, 245, 781
Hpy8I GTNNAC 1 cut(s) 709
HpyCH4III ACNGT 5 cut(s) 162, 208, 434, 677, 806
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 172, 743, 798
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 506
HpyF3I CTNAG 2 cut(s) 138, 299
HpySE526I ACGT 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 6 cut(s) 172, 248, 473, 499, 720, 784
HspAI GCGC 1 cut(s) 185
KasI GGCGCC 1 cut(s) 184
KpnI GGTACC 2 cut(s) 207, 241
Kzo9I GATC 3 cut(s) 361, 623, 783
LmnI GCTCC 1 cut(s) 580
Lsp1109I GCAGC 2 cut(s) 643, 727
MaeI CTAG 4 cut(s) 21, 620, 728, 856
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 56, 208
MalI GATC 3 cut(s) 363, 625, 785
MboI GATC 3 cut(s) 361, 623, 783
MboII GAAGA 3 cut(s) 222, 568, 609
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 25, 344, 694
Mly113I GGCGCC 1 cut(s) 185
MnlI CCTC 7 cut(s) 25, 77, 110, 376, 598, 709, 714
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 3 cut(s) 173, 246, 835
MspI CCGG 5 cut(s) 120, 126, 189, 282, 819
MspR9I CCNGG 6 cut(s) 107, 121, 189, 190, 283, 819
Mva1269I GAATGC 2 cut(s) 842, 844
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 178, 506
NarI GGCGCC 1 cut(s) 185
NciI CCSGG 5 cut(s) 121, 189, 190, 283, 819
NcoI CCATGG 1 cut(s) 495
NdeII GATC 3 cut(s) 361, 623, 783
NlaIII CATG 6 cut(s) 172, 248, 473, 499, 720, 784
NlaIV GGNNCC 4 cut(s) 124, 186, 205, 239
NmuCI GTSAC 2 cut(s) 56, 208
NspI RCATGY 1 cut(s) 172
PagI TCATGA 2 cut(s) 244, 780
PctI GAATGC 2 cut(s) 842, 844
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 286, 724
PflMI CCANNNNNTGG 2 cut(s) 496, 516
PfoI TCCNGGA 1 cut(s) 281
PkrI GCNGC 2 cut(s) 633, 742
PluTI GGCGCC 1 cut(s) 188
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 56
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 124, 186, 205, 239
PspPI GGNCC 2 cut(s) 109, 123
PstI CTGCAG 1 cut(s) 745
PstNI CAGNNNCTG 1 cut(s) 516
RsaI GTAC 3 cut(s) 205, 239, 304
RsaNI GTAC 3 cut(s) 204, 238, 303
RseI CAYNNNNRTG 3 cut(s) 173, 246, 835
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 735
SatI GCNGC 2 cut(s) 632, 741
Sau3AI GATC 3 cut(s) 361, 623, 783
Sau96I GGNCC 2 cut(s) 109, 123
ScaI AGTACT 1 cut(s) 304
ScrFI CCNGG 6 cut(s) 107, 121, 189, 190, 283, 819
SduI GDGCHC 1 cut(s) 70
SetI ASST 8 cut(s) 67, 153, 183, 533, 547, 577, 640, 748
SfcI CTRYAG 1 cut(s) 741
SfoI GGCGCC 1 cut(s) 186
SinI GGWCC 2 cut(s) 109, 123
SmaI CCCGGG 1 cut(s) 190
SmiMI CAYNNNNRTG 3 cut(s) 173, 246, 835
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
Sse9I AATT 3 cut(s) 25, 344, 694
SsiI CCGC 1 cut(s) 585
SspDI GGCGCC 1 cut(s) 184
SspMI CTAG 4 cut(s) 21, 620, 728, 856
StyD4I CCNGG 6 cut(s) 105, 119, 187, 188, 281, 817
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 5 cut(s) 162, 208, 434, 677, 806
TaiI ACGT 1 cut(s) 67
TaqI TCGA 4 cut(s) 165, 708, 748, 760
TasI AATT 3 cut(s) 25, 344, 694
TatI WGTACW 1 cut(s) 302
TfiI GAWTC 2 cut(s) 286, 724
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 2 cut(s) 202, 805
TseFI GTSAC 2 cut(s) 56, 208
TseI GCWGC 2 cut(s) 631, 740
Tsp45I GTSAC 2 cut(s) 56, 208
TspDTI ATGAA 6 cut(s) 121, 191, 395, 458, 630, 769
TspGWI ACGGA 2 cut(s) 379, 465
TspMI CCCGGG 1 cut(s) 188
TspRI CASTG 2 cut(s) 202, 805
Van91I CCANNNNNTGG 2 cut(s) 496, 516
VpaK11BI GGWCC 2 cut(s) 109, 123
XagI CCTNNNNNAGG 1 cut(s) 104
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XmaI CCCGGG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 4 cut(s) 21, 620, 728, 856
ZrmI AGTACT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.