Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000406

Physical Location & Seq

Genomic Coordinates Reverse (-)

73409493 .. 73410618

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG509800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCTTCTTGTAACATCTCCAGGATGCTGCTTCTTTCTTTATTCATCACCTCTCTTCTAGCCATCACTGCCTCAGCTGGTAATTTTTTTCAAGACTTTGACATTACATTTGGCGATCAACGCGCTAAGATACTCGAAGGAGGACAGTTTCTCACTCTCAACCTCGACAAGTATTCTGGGTCTGGTTTCAAATCCAAGAACGAGTACTTATTCGGAAGGATCGACATGCAAATCAAGCTCGTGCCCGGTAACTCGGCTGGCACTGTCACTACGTACTATTTATCCTCTGAAGGTCCAACTCATGATGAAATCGACTTCGAGTTTTTGGGCAACTCATCTGGAGATCCCTACACTCTCCACACCAATGTGTTCAGTCAGGGCAAAGGGGACAGAGAACAACAATTCCATCTTTGGTTTGATCCCACAACGGCCTTCCACACCTACTCATTTGTCTGGAACTCCCAACGCATTATATTCTTTGTCGACAACATTCCAATCCGAGTGTTCAACAACATGGAATCATTTGGTGTTCCATTCCCTAAAAACCAGCCAATGAGGATTTACTCGAGTCTGTGGAATGCCGACGACTGGGCTACACAAGGCGGGCGTGTGAAGACTGACTGGACGCAAGCTCCTTTCACTGCTTCGTATCGAAACTTCAAGGCCAATGCTTGTGTTGCTGGATCCTCCTCCTCCTCCTGCGGTGTCGCCACCGTTGCATCGACTGATAAGACACAGCAGAGTGCATGGCAGACTCAAACGCTTGATGCTGCAGGGCGAAATAGGCTTCGATGGGTGCAACAAAAGTTCATGGTGTACAACTACTGCTCTGACCTCAAAAGATTCCCCCAAGGCCTTCCGGTCGAATGCAAGCGATCAAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

295

Amino Acids

33.35

Weight (kDa)

8.53

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	31 - 209	1.1e-65	Glycosyl hydrolases family 16
XET_C	PF06955	246 - 290	2.9e-19	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23730 AT4G14130
fragaria_vesca	FvH4_3g06510 FvH4_4g12960 FvH4_6g38150 FvH4_6g38150 FvH4_6g38150 FvH4_6g38160 FvH4_6g38170 FvH4_6g38181 FvH4_6g38190
malus_domestica	MD04G1020100.v1.1 MD09G1152400.v1.1 MD09G1152600.v1.1 MD09G1152700.v1.1 MD17G1139900.v1.1 MD17G1140000.v1.1
prunus_persica	Prupe.1G169700_v2.0.a1 Prupe.3G171500_v2.0.a1 Prupe.3G171600_v2.0.a1 Prupe.3G171700_v2.0.a1 Prupe.3G171800_v2.0.a1 Prupe.3G172000_v2.0.a1 Prupe.3G172100_v2.0.a1 Prupe.4G072800_v2.0.a1
pyrus_communis	pycom04g01620 pycom09g07160 pycom09g07220 pycom09g07230 pycom10g22480 pycom13g29190 pycom17g13320
rosa_chinensis	RchiOBHm_Chr2g0151371 RchiOBHm_Chr2g0151381 RchiOBHm_Chr2g0151401 RchiOBHm_Chr2g0151421 RchiOBHm_Chr2g0151431 RchiOBHm_Chr2g0151441 RchiOBHm_Chr2g0152071 RchiOBHm_Chr4g0412651 RchiOBHm_Chr5g0012671
rosa_laevigata	RLG00000008270 RLG00000020544 RLG00000020546 RLG00000020547 RLG00000020548 RLG00000020549 RLG00000020605 RLG00000031947
rosa_multiflora	Rmu_co8167812.1_g000001 Rmu_co8363165.1_g000001 Rmu_co8513985.1_g000001 Rmu_sc0000940.1_g000002 Rmu_sc0000940.1_g000005 Rmu_sc0000940.1_g000006 Rmu_sc0000940.1_g000009 Rmu_sc0002516.1_g000015 Rmu_sc0002516.1_g000017 Rmu_sc0002516.1_g000018 Rmu_sc0043125.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063930 Rroxscaffold_2G00095990 Rroxscaffold_2G00096470 Rroxscaffold_2G00096480 Rroxscaffold_2G00096490 Rroxscaffold_2G00096500 Rroxscaffold_5G00356830
rosa_rugosa	Rorug02G0425600 Rorug02G0425700 Rorug02G0425800 Rorug02G0425900 Rorug02G0430500 Rorug02G0430600 Rorug04G0115400 Rorug05G0003700
rosa_samantha	Rh2BG499200 Rh2CG472700 Rh2CG472800 Rh2CG473000 Rh2CG473100 Rh2CG473300 Rh2CG477800 Rh2DG509800 Rh2DG509900 Rh2DG510100 Rh2DG510200 Rh2DG510300 Rh2DG515000 Rh4AG174700 Rh4BG174000 Rh5AG097500
rosa_wichuraiana	Rw2G039850 Rw2G039860 Rw2G039870 Rw2G039880 Rw2G039890 Rw2G039900 Rw2G040400 Rw4G014650 Rw5G008540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	123
AciI	CCGC	2 cut(s)	603, 702
AclWI	GGATC	5 cut(s)	227, 338, 413, 678, 691
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	3 cut(s)	206, 275, 818
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgsI	TTSAA	4 cut(s)	92, 190, 508, 661
AjnI	CCWGG	1 cut(s)	20
AleI	CACNNNNGTG	1 cut(s)	365
AloI	GAACNNNNNNTCC	2 cut(s)	387, 419
AluBI	AGCT	3 cut(s)	77, 238, 632
AluI	AGCT	3 cut(s)	77, 238, 632
AlwI	GGATC	5 cut(s)	227, 338, 413, 678, 691
Ama87I	CYCGRG	1 cut(s)	565
AoxI	GGCC	3 cut(s)	429, 663, 853
ApeKI	GCWGC	2 cut(s)	28, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	683
BarI	GAAGNNNNNNTAC	2 cut(s)	641, 673
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	620
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	15, 757
BccI	CCATC	3 cut(s)	71, 414, 786
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	2 cut(s)	59, 886
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	29, 771
BlsI	GCNGC	2 cut(s)	30, 772
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	22, 246
Bme18I	GGWCC	1 cut(s)	293
BmeT110I	CYCGRG	1 cut(s)	565
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	2 cut(s)	22, 246
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	3 cut(s)	15, 728, 757
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	620
BpmI	CTGGAG	2 cut(s)	4, 360
Bpu10I	CCTNAGC	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	246
BsaAI	YACGTR	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	850
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse1I	ACTGG	2 cut(s)	593, 626
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	850
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	593, 626
BseRI	GAGGAG	3 cut(s)	679, 682, 685
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	15, 757
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	1 cut(s)	864
BshFI	GGCC	3 cut(s)	431, 665, 855
BsiEI	CGRYCG	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	246, 860
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	2 cut(s)	583, 872
BsnI	GGCC	3 cut(s)	431, 665, 855
BsoBI	CYCGRG	1 cut(s)	565
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	816
Bsp143I	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
BspACI	CCGC	2 cut(s)	603, 702
BspANI	GGCC	3 cut(s)	431, 665, 855
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	5 cut(s)	227, 338, 413, 678, 691
BsrGI	TGTACA	1 cut(s)	816
BsrI	ACTGG	2 cut(s)	593, 626
BssECI	CCNNGG	1 cut(s)	850
BssMI	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
BssSI	CACGAG	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	850
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	147, 265, 715
Bst6I	CTCTTC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	816
BstBAI	YACGTR	1 cut(s)	273
BstC8I	GCNNGC	4 cut(s)	259, 605, 630, 872
BstDEI	CTNAG	2 cut(s)	73, 126
BstF5I	GGATG	1 cut(s)	30
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	118, 222, 346, 421, 686, 878
BstMBI	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
BstMCI	CGRYCG	1 cut(s)	864
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 120, 235, 677, 716, 784
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	20, 244
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	246
BstSNI	TACGTA	1 cut(s)	273
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	15, 757
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	343, 683
BstYI	RGATCY	2 cut(s)	343, 683
BsuRI	GGCC	3 cut(s)	431, 665, 855
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	2 cut(s)	66, 639
BtsIMutI	CAGTG	3 cut(s)	66, 261, 639
Cac8I	GCNNGC	4 cut(s)	259, 605, 630, 872
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	293
CseI	GACGC	1 cut(s)	634
Csp6I	GTAC	3 cut(s)	205, 274, 817
CviAII	CATG	5 cut(s)	226, 302, 514, 747, 811
CviQI	GTAC	3 cut(s)	205, 274, 817
DdeI	CTNAG	2 cut(s)	73, 126
DpnI	GATC	6 cut(s)	117, 221, 345, 420, 685, 877
DpnII	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco105I	TACGTA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	850
Eco147I	AGGCCT	1 cut(s)	855
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	850
FaeI	CATG	5 cut(s)	229, 305, 517, 750, 814
FaiI	YATR	6 cut(s)	227, 303, 473, 515, 748, 812
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	225, 301, 513, 746, 810
FauI	CCCGC	1 cut(s)	596
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	2 cut(s)	29, 771
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	29, 771
FspBI	CTAG	2 cut(s)	59, 886
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	2 cut(s)	29, 771
GsuI	CTGGAG	2 cut(s)	4, 360
HaeIII	GGCC	3 cut(s)	431, 665, 855
HapII	CCGG	2 cut(s)	246, 860
HgaI	GACGC	1 cut(s)	634
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	229, 305, 517, 750, 814
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	518, 568, 754, 843
HpaII	CCGG	2 cut(s)	246, 860
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	484, 817
Hpy188I	TCNGA	4 cut(s)	215, 289, 500, 832
Hpy188III	TCNNGA	4 cut(s)	92, 302, 339, 454
Hpy8I	GTNNAC	2 cut(s)	484, 817
Hpy99I	CGWCG	1 cut(s)	587
HpyAV	CCTTC	5 cut(s)	131, 210, 284, 442, 866
HpyCH4III	ACNGT	3 cut(s)	147, 265, 715
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	6 cut(s)	229, 719, 746, 773, 799, 870
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 120, 235, 677, 716, 784
HpyF3I	CTNAG	2 cut(s)	73, 126
HpySE526I	ACGT	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	229, 305, 517, 750, 814
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	2 cut(s)	15, 757
LweI	GCATC	3 cut(s)	15, 728, 757
MaeI	CTAG	2 cut(s)	59, 886
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	3 cut(s)	11, 248, 265
MalI	GATC	6 cut(s)	117, 221, 345, 420, 685, 877
MboI	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
MboII	GAAGA	2 cut(s)	47, 625
MflI	RGATCY	2 cut(s)	343, 683
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	82, 401
MlyI	GAGTC	2 cut(s)	577, 748
MmeI	TCCRAC	1 cut(s)	320
MslI	CAYNNNNRTG	2 cut(s)	363, 365
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	2 cut(s)	246, 860
MspR9I	CCNGG	2 cut(s)	22, 246
Mva1269I	GAATGC	2 cut(s)	583, 872
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	6 cut(s)	68, 120, 235, 677, 716, 784
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
NlaIII	CATG	5 cut(s)	229, 305, 517, 750, 814
NlaIV	GGNNCC	1 cut(s)	685
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	229
OliI	CACNNNNGTG	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	565
PagI	TCATGA	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	2 cut(s)	583, 872
PfeI	GAWTC	2 cut(s)	518, 843
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	30, 772
PleI	GAGTC	2 cut(s)	576, 748
PpsI	GAGTC	2 cut(s)	576, 748
Ppu21I	YACGTR	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	1 cut(s)	293
PspXI	VCTCGAGB	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	775
PsuI	RGATCY	2 cut(s)	343, 683
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	206, 275, 818
RsaNI	GTAC	3 cut(s)	205, 274, 817
RseI	CAYNNNNRTG	2 cut(s)	363, 365
SalI	GTCGAC	1 cut(s)	482
SatI	GCNGC	2 cut(s)	29, 771
Sau3AI	GATC	6 cut(s)	115, 219, 343, 418, 683, 875
Sau96I	GGNCC	1 cut(s)	293
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	2 cut(s)	577, 748
ScrFI	CCNGG	2 cut(s)	22, 246
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	3 cut(s)	15, 728, 757
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	565
SmiMI	CAYNNNNRTG	2 cut(s)	363, 365
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SnaBI	TACGTA	1 cut(s)	273
Sse9I	AATT	2 cut(s)	82, 401
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	2 cut(s)	603, 702
SspMI	CTAG	2 cut(s)	59, 886
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	20, 244
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	147, 265, 715
TaiI	ACGT	1 cut(s)	275
TasI	AATT	2 cut(s)	82, 401
TatI	WGTACW	2 cut(s)	204, 816
TfiI	GAWTC	2 cut(s)	518, 843
TscAI	CASTG	3 cut(s)	73, 268, 646
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	28, 770
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	3 cut(s)	34, 321, 799
TspRI	CASTG	3 cut(s)	73, 268, 646
VpaK11BI	GGWCC	1 cut(s)	293
XceI	RCATGY	1 cut(s)	229
XhoI	CTCGAG	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	2 cut(s)	59, 886
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.