Rroxscaffold_2G00096020

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012170
Physical Location & Seq
Forward (+)
17273022 .. 17275969
2948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096020.1

Sequence Viewer

Length: 882 bp
ATGCTTCGACTCAGTCTCCTCCCATTTCATCGTTTTCCAATCTCTTCCCATTTCCTCAATCTCTCTCCCAAGTCCACAATGGCCGTCTCTGCTTCTTACACGACGTCGTCACACTCCTCCTCCAAGCTTCTGTTCCGTCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAAACCCGCCCTGTTGATTGATCCTGTGGACAAAACAGTGGAGAGGGATCTTTCCCTTGTTAAAGAGTTGGGTTTGAAGCTGGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGTCTCATCAAGAGTAAGCTTGATGGTGTGAAATCTGTGATTTCAAGGGCAAGCAAGTCAAAAGCTGATCATCTGATTGAAGCTGGTGATAAAATCTATTTTGGAGACATGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACGTTGGGCTGTGTCACCTATGTTACAGGTGATGGGCCTAATCAGCCTCAACCAAGGATGGCTTTCACTGGAGATGCTCTACTCATACGTGGATGTGGGCGAACTGATTTTCAGGTACAGGTGGCAGCTCAGATCAACTCTATGAGTCAGTCCATTCACAGGCAAATTTTCACATTGCCAAAGGATACATTAATCTATCCCGCTCATGATTACAAGGGATTCACTGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGATATCATGAAAAATCTAAAACTCGCATATCCCAAAATGATTGACATAGCTGTGCCTGCGAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGCTGAGTCCGTATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

293

Amino Acids

32.41

Weight (kDa)

8.31

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 128 - 226 9.5e-06 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 674
AciI CCGC 2 cut(s) 207, 672
AclWI GGATC 2 cut(s) 215, 255
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 636
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 588
AfiI CCNNNNNNNGG 1 cut(s) 630
AflIII ACRYGT 2 cut(s) 186, 438
AgsI TTSAA 4 cut(s) 277, 375, 410, 761
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 116, 148
AluBI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 599, 812
AluI AGCT 9 cut(s) 127, 142, 280, 349, 395, 413, 458, 599, 812
Alw26I GTCTC 4 cut(s) 20, 91, 338, 429
AlwI GGATC 2 cut(s) 215, 255
AoxI GGCC 3 cut(s) 81, 506, 857
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 1 cut(s) 636
AseI ATTAAT 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 3 cut(s) 428, 478, 512
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 347, 497, 523
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 649
BclI TGATCA 2 cut(s) 313, 397
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 4 cut(s) 20, 91, 338, 429
BfaI CTAG 1 cut(s) 880
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 1 cut(s) 597
BlsI GCNGC 1 cut(s) 598
Bme1390I CCNGG 2 cut(s) 465, 733
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 506
BmrFI CCNGG 2 cut(s) 465, 733
BmsI GCATC 2 cut(s) 535, 708
BpmI CTGGAG 1 cut(s) 561
BpuMI CCSGG 1 cut(s) 733
BsaAI YACGTR 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 464, 524, 705, 731
BsaXI ACNNNNNCTCC 3 cut(s) 30, 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 630
Bse1I ACTGG 3 cut(s) 328, 334, 544
Bse3DI GCAATG 1 cut(s) 644
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 4 cut(s) 464, 524, 705, 731
BseGI GGATG 2 cut(s) 534, 569
BseLI CCNNNNNNNGG 1 cut(s) 630
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 3 cut(s) 25, 614, 855
BseNI ACTGG 3 cut(s) 328, 334, 544
BseRI GAGGAG 5 cut(s) 8, 106, 109, 167, 728
BseXI GCAGC 1 cut(s) 608
BshFI GGCC 3 cut(s) 83, 508, 859
BsiSI CCGG 1 cut(s) 733
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 630
BsmAI GTCTC 4 cut(s) 20, 91, 338, 429
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 3 cut(s) 83, 508, 859
Bso31I GGTCTC 1 cut(s) 338
Bsp143I GATC 5 cut(s) 220, 247, 313, 397, 603
BspACI CCGC 2 cut(s) 207, 672
BspANI GGCC 3 cut(s) 83, 508, 859
BspCNI CTCAG 3 cut(s) 24, 613, 856
BspHI TCATGA 2 cut(s) 676, 768
BspPI GGATC 2 cut(s) 215, 255
BspQI GCTCTTC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 644
BsrI ACTGG 3 cut(s) 328, 334, 544
BssECI CCNNGG 4 cut(s) 464, 524, 705, 731
BssMI GATC 5 cut(s) 220, 247, 313, 397, 603
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 524
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 3 cut(s) 238, 697, 706
Bst6I CTCTTC 2 cut(s) 49, 149
BstACI GRCGYC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 382, 819, 861
BstDEI CTNAG 3 cut(s) 11, 600, 864
BstDSI CCRYGG 1 cut(s) 705
BstF5I GGATG 2 cut(s) 534, 569
BstKTI GATC 5 cut(s) 223, 250, 316, 400, 606
BstMAI GTCTC 4 cut(s) 20, 91, 338, 429
BstMBI GATC 5 cut(s) 220, 247, 313, 397, 603
BstMWI GCNNNNNNNGC 3 cut(s) 89, 514, 818
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 463, 731
BstV1I GCAGC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 83, 508, 859
BtgI CCRYGG 1 cut(s) 705
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 534, 569
BtsIMutI CAGTG 5 cut(s) 243, 321, 327, 537, 693
Cac8I GCNNGC 3 cut(s) 382, 819, 861
CciI TCATGA 2 cut(s) 676, 768
Cfr13I GGNCC 1 cut(s) 506
Csp6I GTAC 1 cut(s) 587
CviAII CATG 6 cut(s) 302, 308, 317, 439, 677, 769
CviQI GTAC 1 cut(s) 587
DdeI CTNAG 3 cut(s) 11, 600, 864
DpnI GATC 5 cut(s) 222, 249, 315, 399, 605
DpnII GATC 5 cut(s) 220, 247, 313, 397, 603
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 49, 149
EarI CTCTTC 2 cut(s) 49, 149
Eco130I CCWWGG 1 cut(s) 524
Eco147I AGGCCT 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 338
Eco32I GATATC 1 cut(s) 766
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 524
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 6 cut(s) 305, 311, 320, 442, 680, 772
FalI AAGNNNNNCTT 2 cut(s) 517, 549
FaqI GGGAC 1 cut(s) 175
FatI CATG 6 cut(s) 301, 307, 316, 438, 676, 768
FauI CCCGC 2 cut(s) 214, 679
FbaI TGATCA 2 cut(s) 313, 397
Fnu4HI GCNGC 1 cut(s) 597
FokI GGATG 2 cut(s) 541, 576
Fsp4HI GCNGC 1 cut(s) 597
FspBI CTAG 1 cut(s) 880
GluI GCNGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 83, 508, 859
HapII CCGG 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 6 cut(s) 305, 311, 320, 442, 680, 772
HindIII AAGCTT 2 cut(s) 125, 347
HinfI GANTC 5 cut(s) 9, 155, 616, 690, 866
HpaII CCGG 1 cut(s) 733
HphI GGTGA 3 cut(s) 428, 478, 512
Hpy166II GTNNAC 2 cut(s) 75, 229
Hpy188I TCNGA 3 cut(s) 405, 603, 853
Hpy188III TCNNGA 4 cut(s) 148, 340, 677, 769
Hpy8I GTNNAC 2 cut(s) 75, 229
Hpy99I CGWCG 3 cut(s) 106, 109, 188
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 3 cut(s) 238, 697, 706
HpyCH4IV ACGT 4 cut(s) 104, 186, 473, 559
HpyCH4V TGCA 1 cut(s) 841
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 514, 818
HpyF3I CTNAG 3 cut(s) 11, 600, 864
HpySE526I ACGT 4 cut(s) 104, 186, 473, 559
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 6 cut(s) 305, 311, 320, 442, 680, 772
Ksp22I TGATCA 2 cut(s) 313, 397
Kzo9I GATC 5 cut(s) 220, 247, 313, 397, 603
LguI GCTCTTC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 2 cut(s) 535, 708
MaeI CTAG 1 cut(s) 880
MaeII ACGT 4 cut(s) 104, 186, 473, 559
MaeIII GTNAC 4 cut(s) 108, 319, 484, 493
MalI GATC 5 cut(s) 222, 249, 315, 399, 605
MbiI CCGCTC 1 cut(s) 674
MboI GATC 5 cut(s) 220, 247, 313, 397, 603
MboII GAAGA 3 cut(s) 36, 136, 773
MflI RGATCY 1 cut(s) 247
MluCI AATT 1 cut(s) 636
MlyI GAGTC 4 cut(s) 3, 164, 625, 875
MseI TTAA 2 cut(s) 261, 662
MslI CAYNNNNRTG 2 cut(s) 306, 812
MspI CCGG 1 cut(s) 733
MspR9I CCNGG 2 cut(s) 465, 733
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 3 cut(s) 89, 514, 818
NciI CCSGG 1 cut(s) 733
NdeII GATC 5 cut(s) 220, 247, 313, 397, 603
NlaIII CATG 6 cut(s) 305, 311, 320, 442, 680, 772
NmuCI GTSAC 3 cut(s) 108, 319, 484
NspI RCATGY 1 cut(s) 442
PagI TCATGA 2 cut(s) 676, 768
PceI AGGCCT 1 cut(s) 859
PciI ACATGT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 690
PflFI GACNNNGTC 2 cut(s) 12, 106
PkrI GCNGC 1 cut(s) 598
PleI GAGTC 4 cut(s) 3, 163, 624, 874
PpsI GAGTC 4 cut(s) 3, 163, 624, 874
Ppu21I YACGTR 1 cut(s) 560
PscI ACATGT 1 cut(s) 438
PshBI ATTAAT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 247
PsyI GACNNNGTC 2 cut(s) 12, 106
RsaI GTAC 1 cut(s) 588
RsaNI GTAC 1 cut(s) 587
RseI CAYNNNNRTG 2 cut(s) 306, 812
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 261, 662
SatI GCNGC 1 cut(s) 597
Sau3AI GATC 5 cut(s) 220, 247, 313, 397, 603
Sau96I GGNCC 1 cut(s) 506
SchI GAGTC 4 cut(s) 3, 164, 625, 875
ScrFI CCNGG 2 cut(s) 465, 733
SfaNI GCATC 2 cut(s) 535, 708
SmiMI CAYNNNNRTG 2 cut(s) 306, 812
Sse9I AATT 1 cut(s) 636
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 2 cut(s) 207, 672
SspMI CTAG 1 cut(s) 880
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 2 cut(s) 463, 731
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 238, 697, 706
TaiI ACGT 4 cut(s) 107, 189, 476, 562
TaqI TCGA 3 cut(s) 7, 147, 454
TasI AATT 1 cut(s) 636
TfiI GAWTC 1 cut(s) 690
Tru1I TTAA 2 cut(s) 261, 662
Tru9I TTAA 2 cut(s) 261, 662
TscAI CASTG 5 cut(s) 243, 328, 334, 544, 700
TseFI GTSAC 3 cut(s) 108, 319, 484
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 3 cut(s) 108, 319, 484
TspDTI ATGAA 4 cut(s) 17, 296, 308, 785
TspGWI ACGGA 2 cut(s) 125, 859
TspRI CASTG 5 cut(s) 243, 328, 334, 544, 700
Tth111I GACNNNGTC 2 cut(s) 12, 106
VspI ATTAAT 1 cut(s) 662
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 880
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.