Rmu_sc0000760.1_g000022

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000760.1
OG0012170
Physical Location & Seq
Forward (+)
67096 .. 69617
2522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000760.1_g000022.1.cds

Sequence Viewer

Length: 795 bp
atggccgtctctgcttcttacacgacgtcgtcacactcctcctccaagcttctcttccgtcagctcttcgagaaggagtcctccacctacacttacctcctcgccgacgtgtcccaccccgataaacccgccctgttgattgatcctgtggacaaaacagtggatagggatctttcccttgttaaagagttgggtttgaagctggtttatgctatgaacactcatgttcatgctgatcatgtcactggcactggtctcatcaagagcaagcttgatggtgtgaaatctgtgatttcaagggcaagcaagtcaaaagctgatcatctgattgaagctggtgataaaatctattttggagacatgtttttggaggttcgagctactcctgggcatacgttgggttgtgtcacctatgttacaggtgatgggcctaatcagcctcaaccaagaatggctttcactggagatgctctactcatacgtggatgtgggcgaactgattttcagggtggcagctcagatcaactctatgagtcagtccattcacagattttcacattgccaaaggatacattaatctatcctgctcatgattacaagggattcactgttagcactgtgggggaggagatgctctataatccccggcttacaaaaaataaggagggatttgaagatatcatgaaaaatctaaaacttgcatatcccaaaatgattgacatagctgtgcctgcaaatatggtttgtggattgcaagatttgtctgaaaggcctgctgagtctgtatcaacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

264

Amino Acids

28.97

Weight (kDa)

6.13

Isoelectric Point (pI)

22.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AciI CCGC 1 cut(s) 129
AclWI GGATC 2 cut(s) 137, 177
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 26
AflIII ACRYGT 2 cut(s) 108, 360
AgsI TTSAA 4 cut(s) 199, 297, 332, 674
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 9 cut(s) 49, 64, 202, 271, 317, 335, 380, 516, 725
AluI AGCT 9 cut(s) 49, 64, 202, 271, 317, 335, 380, 516, 725
Alw26I GTCTC 3 cut(s) 13, 260, 351
AlwI GGATC 2 cut(s) 137, 177
AoxI GGCC 3 cut(s) 3, 428, 770
ApeKI GCWGC 1 cut(s) 513
AseI ATTAAT 1 cut(s) 575
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 3 cut(s) 350, 400, 434
BbvI GCAGC 1 cut(s) 525
BccI CCATC 2 cut(s) 269, 419
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 2 cut(s) 235, 319
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 13, 260, 351
BfaI CTAG 1 cut(s) 793
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 1 cut(s) 514
BlsI GCNGC 1 cut(s) 515
Bme1390I CCNGG 2 cut(s) 387, 646
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 387, 646
BmsI GCATC 2 cut(s) 457, 621
BpmI CTGGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 386, 644
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 3 cut(s) 250, 256, 466
Bse3DI GCAATG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 386, 644
BseGI GGATG 1 cut(s) 491
BseJI GATNNNNATC 1 cut(s) 168
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 531, 768
BseNI ACTGG 3 cut(s) 250, 256, 466
BseRI GAGGAG 4 cut(s) 28, 31, 89, 641
BseXI GCAGC 1 cut(s) 525
BshFI GGCC 3 cut(s) 5, 430, 772
BsiSI CCGG 1 cut(s) 646
BslFI GGGAC 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 13, 260, 351
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 5, 430, 772
Bso31I GGTCTC 1 cut(s) 260
Bsp143I GATC 5 cut(s) 142, 169, 235, 319, 520
BspACI CCGC 1 cut(s) 129
BspANI GGCC 3 cut(s) 5, 430, 772
BspCNI CTCAG 2 cut(s) 530, 769
BspHI TCATGA 2 cut(s) 589, 681
BspPI GGATC 2 cut(s) 137, 177
BspQI GCTCTTC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 557
BsrI ACTGG 3 cut(s) 250, 256, 466
BssECI CCNNGG 2 cut(s) 386, 644
BssMI GATC 5 cut(s) 142, 169, 235, 319, 520
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 160, 610, 619
Bst6I CTCTTC 2 cut(s) 59, 71
BstACI GRCGYC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 4 cut(s) 269, 304, 732, 774
BstDEI CTNAG 2 cut(s) 517, 777
BstF5I GGATG 1 cut(s) 491
BstKTI GATC 5 cut(s) 145, 172, 238, 322, 523
BstMAI GTCTC 3 cut(s) 13, 260, 351
BstMBI GATC 5 cut(s) 142, 169, 235, 319, 520
BstMWI GCNNNNNNNGC 3 cut(s) 11, 436, 731
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 385, 644
BstV1I GCAGC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 3 cut(s) 5, 430, 772
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 491
BtsIMutI CAGTG 6 cut(s) 165, 243, 249, 459, 606, 615
Cac8I GCNNGC 4 cut(s) 269, 304, 732, 774
CciI TCATGA 2 cut(s) 589, 681
Cfr13I GGNCC 1 cut(s) 428
CviAII CATG 6 cut(s) 224, 230, 239, 361, 590, 682
DdeI CTNAG 2 cut(s) 517, 777
DpnI GATC 5 cut(s) 144, 171, 237, 321, 522
DpnII GATC 5 cut(s) 142, 169, 235, 319, 520
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 59, 71
EarI CTCTTC 2 cut(s) 59, 71
Eco147I AGGCCT 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 385
EcoRV GATATC 1 cut(s) 679
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 6 cut(s) 227, 233, 242, 364, 593, 685
FalI AAGNNNNNCTT 4 cut(s) 38, 70, 439, 471
FaqI GGGAC 1 cut(s) 97
FatI CATG 6 cut(s) 223, 229, 238, 360, 589, 681
FauI CCCGC 1 cut(s) 136
FbaI TGATCA 2 cut(s) 235, 319
Fnu4HI GCNGC 1 cut(s) 514
FokI GGATG 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 514
FspBI CTAG 1 cut(s) 793
GluI GCNGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 5, 430, 772
HapII CCGG 1 cut(s) 646
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 6 cut(s) 227, 233, 242, 364, 593, 685
HindIII AAGCTT 2 cut(s) 47, 269
HinfI GANTC 4 cut(s) 77, 533, 603, 779
HpaII CCGG 1 cut(s) 646
HphI GGTGA 3 cut(s) 350, 400, 434
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 327, 520, 766
Hpy188III TCNNGA 4 cut(s) 70, 262, 590, 682
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 3 cut(s) 28, 31, 110
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 160, 610, 619
HpyCH4IV ACGT 4 cut(s) 26, 108, 395, 481
HpyCH4V TGCA 3 cut(s) 701, 734, 754
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 436, 731
HpyF3I CTNAG 2 cut(s) 517, 777
HpySE526I ACGT 4 cut(s) 26, 108, 395, 481
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 6 cut(s) 227, 233, 242, 364, 593, 685
Ksp22I TGATCA 2 cut(s) 235, 319
Kzo9I GATC 5 cut(s) 142, 169, 235, 319, 520
LguI GCTCTTC 1 cut(s) 71
Lsp1109I GCAGC 1 cut(s) 525
LweI GCATC 2 cut(s) 457, 621
MaeI CTAG 1 cut(s) 793
MaeII ACGT 4 cut(s) 26, 108, 395, 481
MaeIII GTNAC 4 cut(s) 30, 241, 406, 415
MalI GATC 5 cut(s) 144, 171, 237, 321, 522
MboI GATC 5 cut(s) 142, 169, 235, 319, 520
MboII GAAGA 3 cut(s) 46, 58, 686
MflI RGATCY 1 cut(s) 169
MlyI GAGTC 3 cut(s) 86, 542, 788
MnlI CCTC 9 cut(s) 49, 52, 91, 107, 110, 364, 450, 619, 658
MseI TTAA 2 cut(s) 183, 575
MslI CAYNNNNRTG 2 cut(s) 228, 725
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 2 cut(s) 387, 646
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 11, 436, 731
NciI CCSGG 1 cut(s) 646
NdeII GATC 5 cut(s) 142, 169, 235, 319, 520
NlaIII CATG 6 cut(s) 227, 233, 242, 364, 593, 685
NmuCI GTSAC 3 cut(s) 30, 241, 406
NspI RCATGY 1 cut(s) 364
PagI TCATGA 2 cut(s) 589, 681
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 603
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 515
PleI GAGTC 3 cut(s) 85, 541, 787
PpsI GAGTC 3 cut(s) 85, 541, 787
Ppu21I YACGTR 1 cut(s) 482
PscI ACATGT 1 cut(s) 360
PshBI ATTAAT 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 228, 725
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 183, 575
SatI GCNGC 1 cut(s) 514
Sau3AI GATC 5 cut(s) 142, 169, 235, 319, 520
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 3 cut(s) 86, 542, 788
ScrFI CCNGG 2 cut(s) 387, 646
SfaNI GCATC 2 cut(s) 457, 621
SmiMI CAYNNNNRTG 2 cut(s) 228, 725
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 793
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 2 cut(s) 385, 644
TaaI ACNGT 3 cut(s) 160, 610, 619
TaiI ACGT 4 cut(s) 29, 111, 398, 484
TaqI TCGA 2 cut(s) 69, 376
TfiI GAWTC 1 cut(s) 603
Tru1I TTAA 2 cut(s) 183, 575
Tru9I TTAA 2 cut(s) 183, 575
TscAI CASTG 6 cut(s) 165, 250, 256, 466, 613, 622
TseFI GTSAC 3 cut(s) 30, 241, 406
TseI GCWGC 1 cut(s) 513
Tsp45I GTSAC 3 cut(s) 30, 241, 406
TspDTI ATGAA 3 cut(s) 218, 230, 698
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 6 cut(s) 165, 250, 256, 466, 613, 622
Tth111I GACNNNGTC 1 cut(s) 28
VspI ATTAAT 1 cut(s) 575
XceI RCATGY 1 cut(s) 364
XspI CTAG 1 cut(s) 793
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.