RchiOBHm_Chr2g0152061

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012170
Physical Location & Seq
Reverse (-)
69519142 .. 69522386
3245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52123

Sequence Viewer

Length: 870 bp
ATGCTTCGACTCAGTCTCCTCCCATTTCATCGTTTTCCAATCTCTTCCCATTTCCTCAATCTCTCTCCCAAGTCCACAATGGCCGTCTCTGCTTCTTTCACGACGTCGTCACACTCCTCCAAGCTTCTCTTCCGTCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAAACCCGCCCTGTTGATTGATCCTGTGGACAAAACAGTGGATAGGGATCTTTCCCTTGTTAAAGAGTTGGGTTTGAAGCTGGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGTCTCATCAAGAGCAAGCTTGATGGTGTGAAATCTGTGATTTCAAGGGCAAGCAAGTCAAAAGCTGATCATCTGATTGAAGCTGGTGATAAAATCTATTTTGGAGACATGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACGTTGGGTTGTGTCACCTATGTTACAGGTGATGGGCCTAATCAGCCTCAACCAAGAATGGCTTTCACTGGAGATGCTCTACTCATACGTGGATGTGGGCGAACTGATTTTCAGGGTGGCAGTTCAGATCAACTGTATGAGTCAGTCCATTCACAGATTTTCACATTGCCAAAGGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGCACTGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTACAAAAAATAAGGAGGGATTTGAAGATATCATGAAAAATCTAAAACTTGCATATCCCAAAATGATTGACATAGCTGTGCCTGCAAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGCTGAGTCTGTATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

289

Amino Acids

31.89

Weight (kDa)

6.83

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 54 - 222 5.5e-11 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 107
AciI CCGC 1 cut(s) 204
AclWI GGATC 2 cut(s) 212, 252
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 104
AflIII ACRYGT 2 cut(s) 183, 435
AgsI TTSAA 4 cut(s) 274, 372, 407, 749
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 460
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 8 cut(s) 124, 139, 277, 346, 392, 410, 455, 800
AluI AGCT 8 cut(s) 124, 139, 277, 346, 392, 410, 455, 800
Alw26I GTCTC 4 cut(s) 20, 91, 335, 426
AlwI GGATC 2 cut(s) 212, 252
AoxI GGCC 3 cut(s) 81, 503, 845
AseI ATTAAT 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 721
AsuHPI GGTGA 3 cut(s) 425, 475, 509
BccI CCATC 2 cut(s) 344, 494
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 462
BciVI GTATCC 1 cut(s) 637
BclI TGATCA 2 cut(s) 310, 394
BcnI CCSGG 1 cut(s) 721
BcoDI GTCTC 4 cut(s) 20, 91, 335, 426
BfaI CTAG 1 cut(s) 868
BfuI GTATCC 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 462, 721
BmgBI CACGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 503
BmrFI CCNGG 2 cut(s) 462, 721
BmsI GCATC 2 cut(s) 532, 696
BpmI CTGGAG 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 721
BsaAI YACGTR 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 461, 719
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bse1I ACTGG 3 cut(s) 325, 331, 541
Bse3DI GCAATG 1 cut(s) 632
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 462
BseDI CCNNGG 2 cut(s) 461, 719
BseGI GGATG 1 cut(s) 566
BseJI GATNNNNATC 1 cut(s) 243
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 25, 843
BseNI ACTGG 3 cut(s) 325, 331, 541
BseRI GAGGAG 4 cut(s) 8, 106, 164, 716
BshFI GGCC 3 cut(s) 83, 505, 847
BsiSI CCGG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 4 cut(s) 20, 91, 335, 426
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 3 cut(s) 83, 505, 847
Bso31I GGTCTC 1 cut(s) 335
Bsp143I GATC 5 cut(s) 217, 244, 310, 394, 595
BspACI CCGC 1 cut(s) 204
BspANI GGCC 3 cut(s) 83, 505, 847
BspCNI CTCAG 2 cut(s) 24, 844
BspHI TCATGA 2 cut(s) 664, 756
BspPI GGATC 2 cut(s) 212, 252
BspQI GCTCTTC 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 632
BsrI ACTGG 3 cut(s) 325, 331, 541
BssECI CCNNGG 2 cut(s) 461, 719
BssMI GATC 5 cut(s) 217, 244, 310, 394, 595
BssNI GRCGYC 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 4 cut(s) 235, 603, 685, 694
Bst6I CTCTTC 3 cut(s) 49, 134, 146
BstACI GRCGYC 1 cut(s) 104
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 4 cut(s) 344, 379, 807, 849
BstDEI CTNAG 2 cut(s) 11, 852
BstF5I GGATG 1 cut(s) 566
BstKTI GATC 5 cut(s) 220, 247, 313, 397, 598
BstMAI GTCTC 4 cut(s) 20, 91, 335, 426
BstMBI GATC 5 cut(s) 217, 244, 310, 394, 595
BstMWI GCNNNNNNNGC 3 cut(s) 89, 511, 806
BstNI CCWGG 1 cut(s) 462
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 460, 719
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 3 cut(s) 83, 505, 847
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 566
BtsIMutI CAGTG 6 cut(s) 240, 318, 324, 534, 681, 690
Cac8I GCNNGC 4 cut(s) 344, 379, 807, 849
CciI TCATGA 2 cut(s) 664, 756
Cfr13I GGNCC 1 cut(s) 503
CviAII CATG 6 cut(s) 299, 305, 314, 436, 665, 757
DdeI CTNAG 2 cut(s) 11, 852
DpnI GATC 5 cut(s) 219, 246, 312, 396, 597
DpnII GATC 5 cut(s) 217, 244, 310, 394, 595
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 49, 134, 146
EarI CTCTTC 3 cut(s) 49, 134, 146
Eco147I AGGCCT 1 cut(s) 847
Eco31I GGTCTC 1 cut(s) 335
Eco32I GATATC 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 460
EcoRV GATATC 1 cut(s) 754
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 6 cut(s) 302, 308, 317, 439, 668, 760
FalI AAGNNNNNCTT 4 cut(s) 113, 145, 514, 546
FaqI GGGAC 1 cut(s) 172
FatI CATG 6 cut(s) 298, 304, 313, 435, 664, 756
FauI CCCGC 1 cut(s) 211
FbaI TGATCA 2 cut(s) 310, 394
FokI GGATG 1 cut(s) 573
FspBI CTAG 1 cut(s) 868
GsuI CTGGAG 1 cut(s) 558
HaeIII GGCC 3 cut(s) 83, 505, 847
HapII CCGG 1 cut(s) 721
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 6 cut(s) 302, 308, 317, 439, 668, 760
HindIII AAGCTT 2 cut(s) 122, 344
HinfI GANTC 5 cut(s) 9, 152, 608, 678, 854
HpaII CCGG 1 cut(s) 721
HphI GGTGA 3 cut(s) 425, 475, 509
Hpy166II GTNNAC 2 cut(s) 75, 226
Hpy188I TCNGA 3 cut(s) 402, 595, 841
Hpy188III TCNNGA 5 cut(s) 100, 145, 337, 665, 757
Hpy8I GTNNAC 2 cut(s) 75, 226
Hpy99I CGWCG 3 cut(s) 106, 109, 185
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 4 cut(s) 235, 603, 685, 694
HpyCH4IV ACGT 4 cut(s) 104, 183, 470, 556
HpyCH4V TGCA 3 cut(s) 776, 809, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 511, 806
HpyF3I CTNAG 2 cut(s) 11, 852
HpySE526I ACGT 4 cut(s) 104, 183, 470, 556
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 6 cut(s) 302, 308, 317, 439, 668, 760
Ksp22I TGATCA 2 cut(s) 310, 394
Kzo9I GATC 5 cut(s) 217, 244, 310, 394, 595
LguI GCTCTTC 1 cut(s) 146
LweI GCATC 2 cut(s) 532, 696
MaeI CTAG 1 cut(s) 868
MaeII ACGT 4 cut(s) 104, 183, 470, 556
MaeIII GTNAC 4 cut(s) 108, 316, 481, 490
MalI GATC 5 cut(s) 219, 246, 312, 396, 597
MboI GATC 5 cut(s) 217, 244, 310, 394, 595
MboII GAAGA 4 cut(s) 36, 121, 133, 761
MflI RGATCY 1 cut(s) 244
MlyI GAGTC 4 cut(s) 3, 161, 617, 863
MseI TTAA 2 cut(s) 258, 650
MslI CAYNNNNRTG 2 cut(s) 303, 800
MspI CCGG 1 cut(s) 721
MspR9I CCNGG 2 cut(s) 462, 721
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 89, 511, 806
NciI CCSGG 1 cut(s) 721
NdeII GATC 5 cut(s) 217, 244, 310, 394, 595
NlaIII CATG 6 cut(s) 302, 308, 317, 439, 668, 760
NmuCI GTSAC 3 cut(s) 108, 316, 481
NspI RCATGY 1 cut(s) 439
PagI TCATGA 2 cut(s) 664, 756
PceI AGGCCT 1 cut(s) 847
PciI ACATGT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 678
PflFI GACNNNGTC 2 cut(s) 12, 106
PleI GAGTC 4 cut(s) 3, 160, 616, 862
PpsI GAGTC 4 cut(s) 3, 160, 616, 862
Ppu21I YACGTR 1 cut(s) 557
PscI ACATGT 1 cut(s) 435
PshBI ATTAAT 1 cut(s) 650
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspPI GGNCC 1 cut(s) 503
PsuI RGATCY 1 cut(s) 244
PsyI GACNNNGTC 2 cut(s) 12, 106
RseI CAYNNNNRTG 2 cut(s) 303, 800
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 2 cut(s) 258, 650
Sau3AI GATC 5 cut(s) 217, 244, 310, 394, 595
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 4 cut(s) 3, 161, 617, 863
ScrFI CCNGG 2 cut(s) 462, 721
SfaNI GCATC 2 cut(s) 532, 696
SmiMI CAYNNNNRTG 2 cut(s) 303, 800
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 868
StuI AGGCCT 1 cut(s) 847
StyD4I CCNGG 2 cut(s) 460, 719
TaaI ACNGT 4 cut(s) 235, 603, 685, 694
TaiI ACGT 4 cut(s) 107, 186, 473, 559
TaqI TCGA 3 cut(s) 7, 144, 451
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 2 cut(s) 258, 650
Tru9I TTAA 2 cut(s) 258, 650
TscAI CASTG 6 cut(s) 240, 325, 331, 541, 688, 697
TseFI GTSAC 3 cut(s) 108, 316, 481
Tsp45I GTSAC 3 cut(s) 108, 316, 481
TspDTI ATGAA 4 cut(s) 17, 293, 305, 773
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 6 cut(s) 240, 325, 331, 541, 688, 697
Tth111I GACNNNGTC 2 cut(s) 12, 106
VspI ATTAAT 1 cut(s) 650
XceI RCATGY 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 868
ZraI GACGTC 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.