FvH4_6g38610

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012170
Physical Location & Seq
Forward (+)
30568078 .. 30571506
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38610.t1

Sequence Viewer

Length: 876 bp
ATGCTTCGACTCGGTCTCCTCCCATTTCATCGTATTCCAGTCTCTTCCCATTTCCTCAATCTCTCTCCCAAACCCGCAATGGCCGTCTCTTCTTACACGACGTCGTCTAACTCCTCCTCTTCCTCTAAGCTCCTCTTCCGTCAACTCTTCGAGAAGGACTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAAACCCGCTCTGTTGATTGACCCTGTGGACAAGACTGTGGACAGGGATCTTTCCCTTGTTAAGGAGTTGGGTTTGAAGCTTGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGTCTCATCAAGAGTAAGCTTGATGGTGTGAAGTCTGTGATTTCAAGGGCAAGCAAGTCGAAAGCTGATCATTTGATTGAGGCTGGTGATAAAATCTATTTTGGGGACCTGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACATTAGGTTGTGTTACCTATGTTACAGGTGATGGGCCTAATCAGCCACAACCACGAATGGCTTTCACTGGAGATGCTGTACTCATACGTGGATGTGGGAGAACTGATTTTCAGGGCGGAAGCTCAGATCAACTCTATGAGTCGGTCCATTCTCAGATCTTCACTTTGCCAAAGGATACATTAATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGCACTGTGGGGGAGGAGATGCTCTATAATCCTCGGCTTACAAAAGATAAGGAGGGGTTTGAAGATATCATGAAAAATCTAAAACTCGCATATCCAAAAATGATTGATGTAGCTGTGCCTGCGAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGTTGAGTCCGTATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

292

Amino Acids

31.94

Weight (kDa)

6.55

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 56 - 224 2.3e-11 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 104
AccBSI CCGCTC 1 cut(s) 212
AciI CCGC 3 cut(s) 75, 210, 591
AclWI GGATC 1 cut(s) 258
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 555
AfiI CCNNNNNNNGG 2 cut(s) 265, 448
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 3 cut(s) 280, 378, 755
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 7 cut(s) 130, 283, 352, 398, 461, 597, 806
AluI AGCT 7 cut(s) 130, 283, 352, 398, 461, 597, 806
Alw26I GTCTC 4 cut(s) 20, 46, 91, 341
AlwI GGATC 1 cut(s) 258
AoxI GGCC 3 cut(s) 81, 509, 851
AseI ATTAAT 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 439, 509, 619
AsuHPI GGTGA 2 cut(s) 431, 515
AvaII GGWCC 2 cut(s) 439, 619
BccI CCATC 2 cut(s) 350, 500
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 372, 406
BciT130I CCWGG 1 cut(s) 468
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 2 cut(s) 316, 400
BcoDI GTCTC 4 cut(s) 20, 46, 91, 341
BfaI CTAG 1 cut(s) 874
BfuI GTATCC 1 cut(s) 643
BglII AGATCT 1 cut(s) 630
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 2 cut(s) 439, 619
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 439, 509, 619
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 2 cut(s) 538, 702
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 101
BsaI GGTCTC 2 cut(s) 20, 341
BsaJI CCNNGG 2 cut(s) 467, 725
BsaXI ACNNNNNCTCC 3 cut(s) 30, 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 448
Bse1I ACTGG 4 cut(s) 38, 331, 337, 547
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 2 cut(s) 467, 725
BseGI GGATG 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 265, 448
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 612, 641
BseNI ACTGG 4 cut(s) 38, 331, 337, 547
BseRI GAGGAG 7 cut(s) 8, 103, 106, 122, 151, 170, 722
BshFI GGCC 3 cut(s) 83, 511, 853
BslFI GGGAC 2 cut(s) 178, 452
BslI CCNNNNNNNGG 2 cut(s) 265, 448
BsmAI GTCTC 4 cut(s) 20, 46, 91, 341
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 178, 452
BsnI GGCC 3 cut(s) 83, 511, 853
Bso31I GGTCTC 2 cut(s) 20, 341
Bsp143I GATC 5 cut(s) 250, 316, 400, 601, 630
BspACI CCGC 3 cut(s) 75, 210, 591
BspANI GGCC 3 cut(s) 83, 511, 853
BspCNI CTCAG 2 cut(s) 611, 640
BspHI TCATGA 2 cut(s) 670, 762
BspLI GGNNCC 1 cut(s) 440
BspPI GGATC 1 cut(s) 258
BspTNI GGTCTC 2 cut(s) 20, 341
BsrBI CCGCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 4 cut(s) 38, 331, 337, 547
BssECI CCNNGG 2 cut(s) 467, 725
BssMI GATC 5 cut(s) 250, 316, 400, 601, 630
BssNI GRCGYC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 3 cut(s) 241, 691, 700
Bst6I CTCTTC 5 cut(s) 49, 94, 124, 140, 152
BstACI GRCGYC 1 cut(s) 101
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 2 cut(s) 385, 813
BstDEI CTNAG 3 cut(s) 126, 598, 627
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 572
BstKTI GATC 5 cut(s) 253, 319, 403, 604, 633
BstMAI GTCTC 4 cut(s) 20, 46, 91, 341
BstMBI GATC 5 cut(s) 250, 316, 400, 601, 630
BstMWI GCNNNNNNNGC 2 cut(s) 517, 812
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 1 cut(s) 466
BstX2I RGATCY 2 cut(s) 250, 630
BstYI RGATCY 2 cut(s) 250, 630
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 3 cut(s) 83, 511, 853
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 572
BtsIMutI CAGTG 5 cut(s) 324, 330, 540, 687, 696
Cac8I GCNNGC 2 cut(s) 385, 813
CciI TCATGA 2 cut(s) 670, 762
Cfr13I GGNCC 3 cut(s) 439, 509, 619
Csp6I GTAC 1 cut(s) 554
CviAII CATG 5 cut(s) 305, 311, 320, 671, 763
CviQI GTAC 1 cut(s) 554
DdeI CTNAG 3 cut(s) 126, 598, 627
DpnI GATC 5 cut(s) 252, 318, 402, 603, 632
DpnII GATC 5 cut(s) 250, 316, 400, 601, 630
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 49, 94, 124, 140, 152
EarI CTCTTC 5 cut(s) 49, 94, 124, 140, 152
EciI GGCGGA 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 853
Eco31I GGTCTC 2 cut(s) 20, 341
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 2 cut(s) 439, 619
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 466
EcoRV GATATC 1 cut(s) 760
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 5 cut(s) 308, 314, 323, 674, 766
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 2 cut(s) 178, 452
FatI CATG 5 cut(s) 304, 310, 319, 670, 762
FauI CCCGC 2 cut(s) 82, 217
FbaI TGATCA 2 cut(s) 316, 400
FokI GGATG 1 cut(s) 579
FspBI CTAG 1 cut(s) 874
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 3 cut(s) 83, 511, 853
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 5 cut(s) 308, 314, 323, 674, 766
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HindIII AAGCTT 2 cut(s) 281, 350
HinfI GANTC 5 cut(s) 9, 158, 614, 684, 860
HphI GGTGA 2 cut(s) 431, 515
Hpy166II GTNNAC 3 cut(s) 143, 232, 244
Hpy188I TCNGA 3 cut(s) 601, 630, 847
Hpy188III TCNNGA 4 cut(s) 151, 343, 671, 763
Hpy8I GTNNAC 3 cut(s) 143, 232, 244
Hpy99I CGWCG 3 cut(s) 103, 106, 191
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 3 cut(s) 241, 691, 700
HpyCH4IV ACGT 3 cut(s) 101, 189, 562
HpyCH4V TGCA 1 cut(s) 835
HpyF10VI GCNNNNNNNGC 2 cut(s) 517, 812
HpyF3I CTNAG 3 cut(s) 126, 598, 627
HpySE526I ACGT 3 cut(s) 101, 189, 562
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 5 cut(s) 308, 314, 323, 674, 766
Ksp22I TGATCA 2 cut(s) 316, 400
Kzo9I GATC 5 cut(s) 250, 316, 400, 601, 630
LmnI GCTCC 1 cut(s) 135
LweI GCATC 2 cut(s) 538, 702
MaeI CTAG 1 cut(s) 874
MaeII ACGT 3 cut(s) 101, 189, 562
MaeIII GTNAC 3 cut(s) 322, 487, 496
MalI GATC 5 cut(s) 252, 318, 402, 603, 632
MbiI CCGCTC 1 cut(s) 212
MboI GATC 5 cut(s) 250, 316, 400, 601, 630
MboII GAAGA 7 cut(s) 36, 81, 111, 127, 139, 625, 767
MflI RGATCY 2 cut(s) 250, 630
MlyI GAGTC 4 cut(s) 3, 152, 623, 869
MseI TTAA 2 cut(s) 264, 656
MslI CAYNNNNRTG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 2 cut(s) 517, 812
NdeII GATC 5 cut(s) 250, 316, 400, 601, 630
NlaIII CATG 5 cut(s) 308, 314, 323, 674, 766
NlaIV GGNNCC 1 cut(s) 440
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 1 cut(s) 322
PagI TCATGA 2 cut(s) 670, 762
PceI AGGCCT 1 cut(s) 853
PfeI GAWTC 1 cut(s) 684
PflFI GACNNNGTC 2 cut(s) 12, 103
PleI GAGTC 4 cut(s) 3, 152, 622, 868
PpsI GAGTC 4 cut(s) 3, 152, 622, 868
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 439
PshBI ATTAAT 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 3 cut(s) 439, 509, 619
PspPPI RGGWCCY 1 cut(s) 439
PsuI RGATCY 2 cut(s) 250, 630
PsyI GACNNNGTC 2 cut(s) 12, 103
RsaI GTAC 1 cut(s) 555
RsaNI GTAC 1 cut(s) 554
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 264, 656
Sau3AI GATC 5 cut(s) 250, 316, 400, 601, 630
Sau96I GGNCC 3 cut(s) 439, 509, 619
SchI GAGTC 4 cut(s) 3, 152, 623, 869
ScrFI CCNGG 1 cut(s) 468
SfaNI GCATC 2 cut(s) 538, 702
SinI GGWCC 2 cut(s) 439, 619
SmiMI CAYNNNNRTG 1 cut(s) 309
SseBI AGGCCT 1 cut(s) 853
SsiI CCGC 3 cut(s) 75, 210, 591
SspMI CTAG 1 cut(s) 874
StuI AGGCCT 1 cut(s) 853
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 3 cut(s) 241, 691, 700
TaiI ACGT 3 cut(s) 104, 192, 565
TaqI TCGA 4 cut(s) 7, 150, 392, 457
TaqII GACCGA 1 cut(s) 607
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 1 cut(s) 684
Tru1I TTAA 2 cut(s) 264, 656
Tru9I TTAA 2 cut(s) 264, 656
TscAI CASTG 5 cut(s) 331, 337, 547, 694, 703
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 4 cut(s) 17, 299, 311, 779
TspGWI ACGGA 2 cut(s) 128, 853
TspRI CASTG 5 cut(s) 331, 337, 547, 694, 703
Tth111I GACNNNGTC 2 cut(s) 12, 103
VpaK11BI GGWCC 2 cut(s) 439, 619
VspI ATTAAT 1 cut(s) 656
XagI CCTNNNNNAGG 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 1 cut(s) 874
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.