RLG00000020603

Persulfide dioxygenase ETHE1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012170
Physical Location & Seq
Reverse (-)
66645040 .. 66647549
2510 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020603

Sequence Viewer

Length: 795 bp
ATGGCCGTCTCTGCTTCTTACACGACGTCGTCACACTCCTCCTCCAAGATTCTGTTCCGTCAGCTCTTCGAGAAGGAGTCCTCCACCTACACTTACCTCCTCGCCGACGTGTCCCACCCCGATAGACCCGCCCTGTTGATTGATCCTGTGGACAAAACAGTGGATAGGGATCTTTCCCTTGTTAAAGAGTTGGGTTTGAAGCTGGTTTATGCTATGAACACTCATGTTCATGCTGATCATGTCACCGGCACTGGTCTCATCAAGAGTAAGCTTGATGGTGTGAAATCTGTGATTTCAAGGGCAAGCAAGTCAAAAGCTGATCATCTGATTGAAGCTGGTGATAAAATCTATTTTGGAGACATGTTTTTGGAGGTTCGAGCTACTCCTGGGCATACATTGGGCTGTGTCACCTATGTTACAGGTGATGGGCCTAATCAGCCTCAACCAAGGATGGCTTTCACTGGAGATGCTCTACTCATACGTGGATGTGGGCGAACTGATTTTCAGGGTGGCAGCTCAGATCAACTCTATGAGTCAGTCCATTCACAGATTTTCACATTGCCAAAGGATACATTGATCTATCCTGCTCATGATTACAAGGGATTCACTGTTAGCACCGTGGGGGAGGAGATGCTCTATAATCCCCGGCTTTCAAAAAATAAGGAGGGATTTGAAGATATCATGAAAAATCTAAAACTCGCATATCCCAAAATGATTGACATAGCTGTGCCTGCAAATATGGTTTGTGGATTGCAAGATTTGTCTGAAAGGCCTGCTGAGTCCGTATCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00920 map00920
Pfam Domains
Protein Families
Lactamase_B

Protein Analysis

265

Amino Acids

28.98

Weight (kDa)

6.13

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lactamase_B PF00753 29 - 197 1.2e-10 Metallo-beta-lactamase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012170)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53580 AT1G53580
fragaria_vesca FvH4_6g38610
malus_domestica MD09G1149000.v1.1 MD17G1135300.v1.1
prunus_persica Prupe.3G177200_v2.0.a1
pyrus_communis pycom09g06850 pycom17g12930
rosa_chinensis RchiOBHm_Chr2g0152061
rosa_laevigata RLG00000020603
rosa_multiflora Rmu_sc0000760.1_g000022
rosa_roxburghii Rroxscaffold_2G00096020
rosa_rugosa Rorug02G0430500 Rorug02G0430500
rosa_samantha Rh2AG491300 Rh2BG503700 Rh2CG477700 Rh2DG514900
rosa_wichuraiana Rw2G040390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
AciI CCGC 1 cut(s) 129
AclWI GGATC 2 cut(s) 137, 177
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 26
AflIII ACRYGT 2 cut(s) 108, 360
AgsI TTSAA 5 cut(s) 199, 297, 332, 654, 674
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 385
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 8 cut(s) 64, 202, 271, 317, 335, 380, 516, 725
AluI AGCT 8 cut(s) 64, 202, 271, 317, 335, 380, 516, 725
Alw26I GTCTC 3 cut(s) 13, 260, 351
AlwI GGATC 2 cut(s) 137, 177
AoxI GGCC 3 cut(s) 3, 428, 770
ApeKI GCWGC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 4 cut(s) 235, 350, 400, 434
BbvI GCAGC 1 cut(s) 525
BccI CCATC 3 cut(s) 269, 419, 445
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 1 cut(s) 562
BclI TGATCA 2 cut(s) 235, 319
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 3 cut(s) 13, 260, 351
BfaI CTAG 1 cut(s) 793
BfuI GTATCC 1 cut(s) 562
BisI GCNGC 1 cut(s) 514
BlsI GCNGC 1 cut(s) 515
Bme1390I CCNGG 2 cut(s) 387, 646
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 387, 646
BmsI GCATC 2 cut(s) 457, 621
BpmI CTGGAG 1 cut(s) 483
BpuMI CCSGG 1 cut(s) 646
BsaAI YACGTR 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 386, 446, 618, 644
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 2 cut(s) 256, 466
Bse3DI GCAATG 1 cut(s) 557
Bse8I GATNNNNATC 1 cut(s) 168
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 386, 446, 618, 644
BseGI GGATG 2 cut(s) 456, 491
BseJI GATNNNNATC 1 cut(s) 168
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 531, 768
BseNI ACTGG 2 cut(s) 256, 466
BseRI GAGGAG 4 cut(s) 28, 31, 89, 641
BseXI GCAGC 1 cut(s) 525
BshFI GGCC 3 cut(s) 5, 430, 772
BsiSI CCGG 2 cut(s) 246, 646
BslFI GGGAC 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 13, 260, 351
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 5, 430, 772
Bso31I GGTCTC 1 cut(s) 260
Bsp143I GATC 6 cut(s) 142, 169, 235, 319, 520, 576
BspACI CCGC 1 cut(s) 129
BspANI GGCC 3 cut(s) 5, 430, 772
BspCNI CTCAG 2 cut(s) 530, 769
BspHI TCATGA 2 cut(s) 589, 681
BspPI GGATC 2 cut(s) 137, 177
BspQI GCTCTTC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 2 cut(s) 256, 466
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 4 cut(s) 386, 446, 618, 644
BssMI GATC 6 cut(s) 142, 169, 235, 319, 520, 576
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 160, 610, 619
Bst6I CTCTTC 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 304, 732, 774
BstDEI CTNAG 2 cut(s) 517, 777
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 456, 491
BstKTI GATC 6 cut(s) 145, 172, 238, 322, 523, 579
BstMAI GTCTC 3 cut(s) 13, 260, 351
BstMBI GATC 6 cut(s) 142, 169, 235, 319, 520, 576
BstMWI GCNNNNNNNGC 3 cut(s) 11, 436, 731
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 385, 644
BstV1I GCAGC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuI GTATCC 1 cut(s) 562
BsuRI GGCC 3 cut(s) 5, 430, 772
BtgI CCRYGG 1 cut(s) 618
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 2 cut(s) 456, 491
BtsIMutI CAGTG 4 cut(s) 165, 249, 459, 606
Cac8I GCNNGC 3 cut(s) 304, 732, 774
CciI TCATGA 2 cut(s) 589, 681
Cfr10I RCCGGY 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 428
CviAII CATG 6 cut(s) 224, 230, 239, 361, 590, 682
DdeI CTNAG 2 cut(s) 517, 777
DpnI GATC 6 cut(s) 144, 171, 237, 321, 522, 578
DpnII GATC 6 cut(s) 142, 169, 235, 319, 520, 576
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 772
Eco31I GGTCTC 1 cut(s) 260
Eco32I GATATC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 385
EcoRV GATATC 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 446
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 6 cut(s) 227, 233, 242, 364, 593, 685
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 97
FatI CATG 6 cut(s) 223, 229, 238, 360, 589, 681
FauI CCCGC 1 cut(s) 136
FbaI TGATCA 2 cut(s) 235, 319
Fnu4HI GCNGC 1 cut(s) 514
FokI GGATG 2 cut(s) 463, 498
Fsp4HI GCNGC 1 cut(s) 514
FspBI CTAG 1 cut(s) 793
GluI GCNGC 1 cut(s) 514
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 3 cut(s) 5, 430, 772
HapII CCGG 2 cut(s) 246, 646
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 6 cut(s) 227, 233, 242, 364, 593, 685
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 5 cut(s) 49, 77, 533, 603, 779
HpaII CCGG 2 cut(s) 246, 646
HphI GGTGA 4 cut(s) 235, 350, 400, 434
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 327, 520, 766
Hpy188III TCNNGA 4 cut(s) 70, 262, 590, 682
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 3 cut(s) 28, 31, 110
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 160, 610, 619
HpyCH4IV ACGT 3 cut(s) 26, 108, 481
HpyCH4V TGCA 2 cut(s) 734, 754
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 436, 731
HpyF3I CTNAG 2 cut(s) 517, 777
HpySE526I ACGT 3 cut(s) 26, 108, 481
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 6 cut(s) 227, 233, 242, 364, 593, 685
Ksp22I TGATCA 2 cut(s) 235, 319
Kzo9I GATC 6 cut(s) 142, 169, 235, 319, 520, 576
LguI GCTCTTC 1 cut(s) 71
Lsp1109I GCAGC 1 cut(s) 525
LweI GCATC 2 cut(s) 457, 621
MaeI CTAG 1 cut(s) 793
MaeII ACGT 3 cut(s) 26, 108, 481
MaeIII GTNAC 4 cut(s) 30, 241, 406, 415
MalI GATC 6 cut(s) 144, 171, 237, 321, 522, 578
MboI GATC 6 cut(s) 142, 169, 235, 319, 520, 576
MboII GAAGA 2 cut(s) 58, 686
MflI RGATCY 1 cut(s) 169
MlyI GAGTC 3 cut(s) 86, 542, 788
MnlI CCTC 9 cut(s) 49, 52, 91, 107, 110, 364, 450, 619, 658
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 228, 725
MspI CCGG 2 cut(s) 246, 646
MspR9I CCNGG 2 cut(s) 387, 646
MvaI CCWGG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 11, 436, 731
NciI CCSGG 1 cut(s) 646
NdeII GATC 6 cut(s) 142, 169, 235, 319, 520, 576
NlaIII CATG 6 cut(s) 227, 233, 242, 364, 593, 685
NmuCI GTSAC 3 cut(s) 30, 241, 406
NspI RCATGY 1 cut(s) 364
PagI TCATGA 2 cut(s) 589, 681
PceI AGGCCT 1 cut(s) 772
PciI ACATGT 1 cut(s) 360
PciSI GCTCTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 49, 603
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 515
PleI GAGTC 3 cut(s) 85, 541, 787
PpsI GAGTC 3 cut(s) 85, 541, 787
Ppu21I YACGTR 1 cut(s) 482
PscI ACATGT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 28
RseI CAYNNNNRTG 2 cut(s) 228, 725
SapI GCTCTTC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 514
Sau3AI GATC 6 cut(s) 142, 169, 235, 319, 520, 576
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 3 cut(s) 86, 542, 788
ScrFI CCNGG 2 cut(s) 387, 646
SfaNI GCATC 2 cut(s) 457, 621
SmiMI CAYNNNNRTG 2 cut(s) 228, 725
SseBI AGGCCT 1 cut(s) 772
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 793
StuI AGGCCT 1 cut(s) 772
StyD4I CCNGG 2 cut(s) 385, 644
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 3 cut(s) 160, 610, 619
TaiI ACGT 3 cut(s) 29, 111, 484
TaqI TCGA 2 cut(s) 69, 376
TfiI GAWTC 2 cut(s) 49, 603
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 4 cut(s) 165, 256, 466, 613
TseFI GTSAC 3 cut(s) 30, 241, 406
TseI GCWGC 1 cut(s) 513
Tsp45I GTSAC 3 cut(s) 30, 241, 406
TspDTI ATGAA 3 cut(s) 218, 230, 698
TspGWI ACGGA 2 cut(s) 47, 772
TspRI CASTG 4 cut(s) 165, 256, 466, 613
Tth111I GACNNNGTC 1 cut(s) 28
XceI RCATGY 1 cut(s) 364
XspI CTAG 1 cut(s) 793
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.