AT1G53860

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009998
Physical Location & Seq
Reverse (-)
20107017 .. 20109665
2649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53860.1

Sequence Viewer

Length: 1329 bp
ATGGACTTCACAAGAAACAGCAACACCAAGCTCCATCCCCAAACTCAGCTTCTGTTTCCCCCTAATATGGAGAAAAACTCAAATGTTAGCGCCAACCCATTTGCAGAAGACTCACTTACAAGCAGAATCAATCTAAAGGAAACTACAGATTTCATCAAGTCACTTCCAATTTCATCAAACCAAAGCAGTAGTAGCAGCAATGAGATGGTAAACGAGAGAAGACCAAGTTTCTCATCACAAAAGAGCATTGGAGAAGGAAGAAGCAATGGACAAAGAAGATTGATGTTAATGGAGTCTCCTTGTACTCCAGGTAGAGGAGTCTTCAGTTTCAGTAGCAATGTCTCTGGTAGAAGAAGAAACTTCCCTTCTAAATGGATTGATGCTGAGAAATGGGTCACTTCCTCTGGTCATGACTCTCCAGCACATTCTCTCAAAAACAACCAATTTGATGGGTTTAAACACCAGGTGGAAGTTGTATACTCAGAGAAATCTAGGGTTACAGAAGAATGTTTCCATGGATCTGTCTCATTATCTCCACAAGATCTTATCCTTAAAGATAAGTTAGCAAACGAAGTTCCTCAGATTCTTCCATCAACGGAAGGGTTTATATTCAAAGATTCCGACAAGTTTCTCCGGTACGAGGAAGCTCAAGTTCAACACAGAGACATGGGAACAGAGATGACACCAATAGGAAGTGTAACGACTTCAAGATGTCACACGCCGTTTAAAAGTTCCTCTCCAGCGAGACACAACACGCCTTCTCAATTGTCTGGTCCGTTAACGGAAACCAAAAACGTTATAGATATATCCGAGTTCGAAGACAAGCTTAGACTCAGTGGGTCATCAACGAGTCAGTATTGTTACTCGGTGACGAGTCATTGGAACTCGAGAGAAGAAGAAGAAGAAGAGATATCGAAGAGTTTAAGACATTTCGATATGGAGAGTGAGTTAAGGAGAAGTGTGTCTGAATCTAAAGCTCCTTTATGGGATGATGAAGACGACAAGATCAAGTTTTGTCAAAGGTATCAAAGAGAAGAGGCCAAAATTCAAGCATGGGTTAATCTTGAAAACGCTAAAGCCGAAGCTCAATCTAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAATTTAGAGGAGAAATTAATGAAGAGAATGGATATGGTGCACCGGAGAGCAGAAGATTGGAGAGCTACGGCGAGGCAGCAACATGTTGAGCAGATGCAGAAAGCGGCCGAGACGGCGAGGAAATTGACAAACCGCCGAGGCTATTTGGTTACCGGCCGTAGCTCATGTGGTTGTCTACCTTGCAATAATACTTGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

442

Amino Acids

50.55

Weight (kDa)

8.47

Isoelectric Point (pI)

62.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 322 - 421 3.8e-23 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 477, 1303
AciI CCGC 2 cut(s) 1232, 1261
AclI AACGTT 1 cut(s) 795
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 2 cut(s) 1233, 1282
AcsI RAATTY 2 cut(s) 1044, 1129
AcuI CTGAAG 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 2 cut(s) 304, 638
AfiI CCNNNNNNNGG 3 cut(s) 67, 314, 640
AflIII ACRYGT 1 cut(s) 1210
AgsI TTSAA 5 cut(s) 613, 656, 708, 1049, 1067
AjnI CCWGG 2 cut(s) 307, 462
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 9 cut(s) 31, 49, 647, 826, 977, 1085, 1099, 1193, 1290
AluI AGCT 9 cut(s) 31, 49, 647, 826, 977, 1085, 1099, 1193, 1290
Alw21I GWGCWC 1 cut(s) 1170
Alw26I GTCTC 6 cut(s) 300, 346, 529, 657, 739, 1232
Alw44I GTGCAC 1 cut(s) 1166
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 886
AoxI GGCC 3 cut(s) 1038, 1233, 1282
ApaLI GTGCAC 1 cut(s) 1166
ApeKI GCWGC 2 cut(s) 195, 1204
ApoI RAATTY 2 cut(s) 1044, 1129
AseI ATTAAT 1 cut(s) 1145
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 773
AsuHPI GGTGA 2 cut(s) 880, 1117
AsuII TTCGAA 1 cut(s) 816
AvaI CYCGRG 1 cut(s) 886
AvaII GGWCC 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 1170
BbsI GAAGAC 5 cut(s) 114, 226, 313, 825, 1002
Bbv12I GWGCWC 1 cut(s) 1170
BbvI GCAGC 2 cut(s) 207, 1216
BccI CCATC 4 cut(s) 42, 199, 443, 598
BceAI ACGGC 4 cut(s) 706, 1212, 1257, 1269
BciT130I CCWGG 2 cut(s) 309, 464
BcoDI GTCTC 6 cut(s) 300, 346, 529, 657, 739, 1232
BfaI CTAG 2 cut(s) 492, 1092
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 1241
BglII AGATCT 1 cut(s) 541
BisI GCNGC 3 cut(s) 196, 1205, 1233
BlsI GCNGC 3 cut(s) 197, 1206, 1234
Bme1390I CCNGG 2 cut(s) 309, 464
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 886
BmgT120I GGNCC 1 cut(s) 773
BmrFI CCNGG 2 cut(s) 309, 464
BmsI GCATC 2 cut(s) 370, 1212
BpiI GAAGAC 5 cut(s) 114, 226, 313, 825, 1002
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 3 cut(s) 291, 402, 723
Bpu14I TTCGAA 1 cut(s) 816
BpuEI CTTGAG 2 cut(s) 633, 1121
BsaJI CCNNGG 2 cut(s) 514, 1264
BsaWI WCCGGW 2 cut(s) 633, 1170
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 314, 640
Bse118I RCCGGY 1 cut(s) 1280
Bse3DI GCAATG 3 cut(s) 205, 271, 343
BseBI CCWGG 2 cut(s) 309, 464
BseDI CCNNGG 2 cut(s) 514, 1264
BseGI GGATG 2 cut(s) 34, 994
BseLI CCNNNNNNNGG 3 cut(s) 67, 314, 640
BseMI GCAATG 3 cut(s) 205, 271, 343
BseMII CTCAG 5 cut(s) 59, 375, 495, 593, 847
BseRI GAGGAG 2 cut(s) 330, 1151
BseSI GKGCMC 1 cut(s) 1170
BseX3I CGGCCG 2 cut(s) 1233, 1282
BseXI GCAGC 2 cut(s) 207, 1216
Bsh1285I CGRYCG 2 cut(s) 1236, 1285
BshFI GGCC 3 cut(s) 1040, 1235, 1284
BsiEI CGRYCG 2 cut(s) 1236, 1285
BsiHKAI GWGCWC 1 cut(s) 1170
BsiHKCI CYCGRG 1 cut(s) 886
BsiSI CCGG 3 cut(s) 634, 1171, 1281
BslI CCNNNNNNNGG 3 cut(s) 67, 314, 640
BsmAI GTCTC 6 cut(s) 300, 346, 529, 657, 739, 1232
BsmBI CGTCTC 1 cut(s) 1232
BsnI GGCC 3 cut(s) 1040, 1235, 1284
BsoBI CYCGRG 1 cut(s) 886
Bsp119I TTCGAA 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 1170
Bsp143I GATC 4 cut(s) 518, 541, 1005, 1124
Bsp19I CCATGG 1 cut(s) 514
BspACI CCGC 2 cut(s) 1232, 1261
BspANI GGCC 3 cut(s) 1040, 1235, 1284
BspCNI CTCAG 5 cut(s) 58, 376, 494, 592, 846
BspHI TCATGA 1 cut(s) 409
BspPI GGATC 1 cut(s) 526
BspT104I TTCGAA 1 cut(s) 816
BsrDI GCAATG 3 cut(s) 205, 271, 343
BsrFI RCCGGY 1 cut(s) 1280
BssAI RCCGGY 1 cut(s) 1280
BssECI CCNNGG 2 cut(s) 514, 1264
BssMI GATC 4 cut(s) 518, 541, 1005, 1124
BssNAI GTATAC 1 cut(s) 478
BssT1I CCWWGG 1 cut(s) 514
Bst1107I GTATAC 1 cut(s) 478
Bst2UI CCWGG 2 cut(s) 309, 464
Bst6I CTCTTC 4 cut(s) 900, 911, 1029, 1145
BstBI TTCGAA 1 cut(s) 816
BstDEI CTNAG 6 cut(s) 45, 384, 481, 579, 827, 833
BstDSI CCRYGG 1 cut(s) 514
BstEII GGTNACC 1 cut(s) 1276
BstF5I GGATG 2 cut(s) 34, 994
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 4 cut(s) 521, 544, 1008, 1127
BstMAI GTCTC 6 cut(s) 300, 346, 529, 657, 739, 1232
BstMBI GATC 4 cut(s) 518, 541, 1005, 1124
BstMCI CGRYCG 2 cut(s) 1236, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 192, 1241
BstNI CCWGG 2 cut(s) 309, 464
BstNSI RCATGY 1 cut(s) 1214
BstPI GGTNACC 1 cut(s) 1276
BstSCI CCNGG 2 cut(s) 307, 462
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 1170
BstV1I GCAGC 2 cut(s) 207, 1216
BstV2I GAAGAC 5 cut(s) 114, 226, 313, 825, 1002
BstX2I RGATCY 2 cut(s) 518, 541
BstXI CCANNNNNNTGG 1 cut(s) 449
BstYI RGATCY 2 cut(s) 518, 541
BstZ17I GTATAC 1 cut(s) 478
BstZI CGGCCG 2 cut(s) 1233, 1282
BsuRI GGCC 3 cut(s) 1040, 1235, 1284
BtgI CCRYGG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 34, 994
BtsIMutI CAGTG 1 cut(s) 841
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 1280
Cfr13I GGNCC 1 cut(s) 773
CsiI ACCWGGT 1 cut(s) 462
Csp6I GTAC 2 cut(s) 303, 637
CviAII CATG 6 cut(s) 410, 515, 667, 1053, 1211, 1293
CviQI GTAC 2 cut(s) 303, 637
DdeI CTNAG 6 cut(s) 45, 384, 481, 579, 827, 833
DpnI GATC 4 cut(s) 520, 543, 1007, 1126
DpnII GATC 4 cut(s) 518, 541, 1005, 1124
DraI TTTAAA 2 cut(s) 457, 727
DraIII CACNNNGTG 1 cut(s) 466
EaeI YGGCCR 2 cut(s) 1233, 1282
EagI CGGCCG 2 cut(s) 1233, 1282
Eam1104I CTCTTC 4 cut(s) 900, 911, 1029, 1145
EarI CTCTTC 4 cut(s) 900, 911, 1029, 1145
EclXI CGGCCG 2 cut(s) 1233, 1282
Eco130I CCWWGG 1 cut(s) 514
Eco32I GATATC 1 cut(s) 912
Eco47I GGWCC 1 cut(s) 773
Eco52I CGGCCG 2 cut(s) 1233, 1282
Eco57I CTGAAG 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 886
Eco91I GGTNACC 1 cut(s) 1276
EcoO65I GGTNACC 1 cut(s) 1276
EcoRII CCWGG 2 cut(s) 307, 462
EcoRV GATATC 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 514
Esp3I CGTCTC 1 cut(s) 1232
FaeI CATG 6 cut(s) 413, 518, 670, 1056, 1214, 1296
FalI AAGNNNNNCTT 4 cut(s) 99, 131, 810, 842
FatI CATG 6 cut(s) 409, 514, 666, 1052, 1210, 1292
FblI GTMKAC 2 cut(s) 477, 1303
Fnu4HI GCNGC 3 cut(s) 196, 1205, 1233
FokI GGATG 2 cut(s) 21, 1001
Fsp4HI GCNGC 3 cut(s) 196, 1205, 1233
FspBI CTAG 2 cut(s) 492, 1092
GlaI GCGC 1 cut(s) 91
GluI GCNGC 3 cut(s) 196, 1205, 1233
GsuI CTGGAG 3 cut(s) 291, 402, 723
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 3 cut(s) 1040, 1235, 1284
HapII CCGG 3 cut(s) 634, 1171, 1281
HhaI GCGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 413, 518, 670, 1056, 1214, 1296
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 2 cut(s) 824, 1097
HpaI GTTAAC 1 cut(s) 780
HpaII CCGG 3 cut(s) 634, 1171, 1281
HphI GGTGA 2 cut(s) 880, 1117
Hpy166II GTNNAC 5 cut(s) 211, 478, 780, 1168, 1304
Hpy188I TCNGA 5 cut(s) 484, 582, 622, 811, 967
Hpy188III TCNNGA 5 cut(s) 410, 708, 888, 1064, 1092
Hpy8I GTNNAC 5 cut(s) 211, 478, 780, 1168, 1304
HpyAV CCTTC 4 cut(s) 248, 375, 593, 768
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 4 cut(s) 104, 1168, 1225, 1311
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 1241
HpyF3I CTNAG 6 cut(s) 45, 384, 481, 579, 827, 833
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 6 cut(s) 413, 518, 670, 1056, 1214, 1296
HspAI GCGC 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 780
Kzo9I GATC 4 cut(s) 518, 541, 1005, 1124
LmnI GCTCC 2 cut(s) 36, 982
Lsp1109I GCAGC 2 cut(s) 207, 1216
LweI GCATC 2 cut(s) 370, 1212
MabI ACCWGGT 1 cut(s) 462
MaeI CTAG 2 cut(s) 492, 1092
MaeII ACGT 1 cut(s) 795
MaeIII GTNAC 8 cut(s) 159, 394, 496, 697, 713, 860, 868, 1276
MalI GATC 4 cut(s) 520, 543, 1007, 1126
MboI GATC 4 cut(s) 518, 541, 1005, 1124
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 2 cut(s) 518, 541
MhlI GDGCHC 1 cut(s) 1170
MluCI AATT 7 cut(s) 168, 443, 764, 1044, 1129, 1142, 1250
MlyI GAGTC 7 cut(s) 104, 302, 327, 407, 825, 859, 883
MmeI TCCRAC 1 cut(s) 645
MspI CCGG 3 cut(s) 634, 1171, 1281
MspR9I CCNGG 2 cut(s) 309, 464
MssI GTTTAAAC 1 cut(s) 457
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 2 cut(s) 309, 464
MwoI GCNNNNNNNGC 2 cut(s) 192, 1241
NcoI CCATGG 1 cut(s) 514
NdeII GATC 4 cut(s) 518, 541, 1005, 1124
NlaIII CATG 6 cut(s) 413, 518, 670, 1056, 1214, 1296
NmeAIII GCCGAG 2 cut(s) 1261, 1289
NmuCI GTSAC 4 cut(s) 159, 394, 713, 868
NspI RCATGY 1 cut(s) 1214
NspV TTCGAA 1 cut(s) 816
PaeR7I CTCGAG 1 cut(s) 886
PagI TCATGA 1 cut(s) 409
PciI ACATGT 1 cut(s) 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PfeI GAWTC 4 cut(s) 126, 583, 617, 968
PkrI GCNGC 3 cut(s) 197, 1206, 1234
PleI GAGTC 7 cut(s) 104, 301, 326, 407, 825, 858, 882
PmeI GTTTAAAC 1 cut(s) 457
PpsI GAGTC 7 cut(s) 104, 301, 326, 407, 825, 858, 882
PscI ACATGT 1 cut(s) 1210
PshBI ATTAAT 1 cut(s) 1145
Psp1406I AACGTT 1 cut(s) 795
Psp6I CCWGG 2 cut(s) 307, 462
PspEI GGTNACC 1 cut(s) 1276
PspGI CCWGG 2 cut(s) 307, 462
PspPI GGNCC 1 cut(s) 773
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 2 cut(s) 518, 541
RsaI GTAC 2 cut(s) 304, 638
RsaNI GTAC 2 cut(s) 303, 637
SatI GCNGC 3 cut(s) 196, 1205, 1233
Sau3AI GATC 4 cut(s) 518, 541, 1005, 1124
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 7 cut(s) 104, 302, 327, 407, 825, 859, 883
ScrFI CCNGG 2 cut(s) 309, 464
SduI GDGCHC 1 cut(s) 1170
SexAI ACCWGGT 1 cut(s) 462
SfaNI GCATC 2 cut(s) 370, 1212
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 816
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 886
SmlI CTYRAG 3 cut(s) 648, 886, 1100
SmoI CTYRAG 3 cut(s) 648, 886, 1100
Sse9I AATT 7 cut(s) 168, 443, 764, 1044, 1129, 1142, 1250
SsiI CCGC 2 cut(s) 1232, 1261
SspMI CTAG 2 cut(s) 492, 1092
StyD4I CCNGG 2 cut(s) 307, 462
StyI CCWWGG 1 cut(s) 514
TaiI ACGT 1 cut(s) 798
TaqI TCGA 4 cut(s) 816, 887, 914, 933
TasI AATT 7 cut(s) 168, 443, 764, 1044, 1129, 1142, 1250
TatI WGTACW 1 cut(s) 302
TauI GCSGC 1 cut(s) 1235
TfiI GAWTC 4 cut(s) 126, 583, 617, 968
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 4 cut(s) 159, 394, 713, 868
TseI GCWGC 2 cut(s) 195, 1204
Tsp45I GTSAC 4 cut(s) 159, 394, 713, 868
TspDTI ATGAA 4 cut(s) 142, 162, 1008, 1163
TspGWI ACGGA 3 cut(s) 611, 765, 797
TspRI CASTG 1 cut(s) 841
VneI GTGCAC 1 cut(s) 1166
VpaK11BI GGWCC 1 cut(s) 773
VspI ATTAAT 1 cut(s) 1145
XapI RAATTY 2 cut(s) 1044, 1129
XbaI TCTAGA 1 cut(s) 1091
XceI RCATGY 1 cut(s) 1214
XhoI CTCGAG 1 cut(s) 886
XmiI GTMKAC 2 cut(s) 477, 1303
XspI CTAG 2 cut(s) 492, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.