RchiOBHm_Chr2g0147831

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0009998
Physical Location & Seq
Forward (+)
65455695 .. 65459216
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51741

Sequence Viewer

Length: 1431 bp
ATGGATCTCACAAGCCCCAGATGTTTCCAAGCTCCAAACTTTATCTCATCTAGTGTGGAACCACCACCATTGGAGAGCAACACAAGCTTCTATGGGAAAAGCAAGAACAACCCATTTGCAGACACCTTCCCTGACCCACTTTGCAAGCTTAATCTCAAAGAGACAGCTGAGTTTGTCAAGTCATTCCCACTACCACCACCAGGCAATGGCCCAGAAAGCAATAGAAGCAATTTTCTTGATTCCTCAGCTCAGAAAAGAGAGGGAGTAACCTCTGTTGTCACACACAAGAAAGTTCTAGAAGCTCCTCCCACACCAGGAAGGCCTGTGTTCAGCTTCAGTGTTGGGAATCTTTCCAGAAAGAGCTTCCCTTCAAAGTGGGATGATGCTGAGAAATGGCTCATAAGTAGTTCTTGCCATGATTCTCCTGCTCACCACACCACAAAGGTTAGTAATGCCAAGCAATGTGACAACTTTAAGCAGCAACAAATGGAGGTGTCAAAAGCAGTCTCAAGCTTTCAGAGGTCTGCATCTTTGAACAATCATAATAGTTCTGCCAAAGCTTTCAAAGGGGGCTTAGGCTCTATGGATGTGCTTCCAAAAGATAAGTTTGTGGATGACATAGAACCAATTCTGCCCAATTTCAAGTATTTGGAGCCAACTAAAGAAGGTTTTCTGTTCAAAAACTCAGCCTGTGAAAACATGAAAGATGCAGGCACAGACCAGTGTCATCAGATAGAACATCGGGATGTTGGGACAGAGATGACTCCTCTTGGCAGTTCAACAACTTCGAGGTGTCACACACCATTCAAGTGCCCATCACCGGCGCGCCATAACACTCCTGAAAATAGGTCAGGGCCATTGGCCTTGGGGCACTCTAGCAGCACCAATAACACCATTGACATTACTCAGTTGCAGGAATGCCATTTAGCTAAGCTTCAACTTGGGACACAATATGATTCAGTTGCATCGACTTGGAACTCAAGGGAAGAGGAGGAAATGGAAATATCAAAGAGCTTGAGGCATTTTGACACAGGCAATGTATATGCAGGCAATGGATACCGAGAAGGTATTTCTGAACCAAGAGCTACTGCTTGGGAAGAGGAAGAAAATAACAAATGCTGCCTTAGGTATCAAAGAGAAGAAGCAAAAATTCAAGCCTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCATTCAAGAAAGCTCGAGGTGAAGATACAGAAGATGAGATCAAACCTGGAGGAGAAGTTGATGAAGAAGATGGCAGTTGTGCATAGAAAAGCCGAGGAATTGAGAGCAGAAGCCAGGCAACAACACACTGAACAAATTCACAAGGCCACCAACCAAGCACAGAAGATGATAAGTCGGCACAACCCTCATTTCTCTGGCCACATTTCTTGCGGTTGCTTCCCTTGCAGTAACCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

476

Amino Acids

53.26

Weight (kDa)

8.29

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 359 - 457 2.5e-26 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccII CGCG 1 cut(s) 826
AciI CCGC 1 cut(s) 1401
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 1387
AcsI RAATTY 2 cut(s) 1149, 1326
AcuI CTGAAG 1 cut(s) 319
AfiI CCNNNNNNNGG 4 cut(s) 200, 206, 314, 820
AjnI CCWGG 5 cut(s) 199, 313, 1157, 1236, 1304
Alw26I GTCTC 2 cut(s) 155, 511
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 1205
AoxI GGCC 6 cut(s) 208, 320, 854, 861, 1335, 1387
ApeKI GCWGC 3 cut(s) 478, 879, 1119
ApoI RAATTY 2 cut(s) 1149, 1326
AscI GGCGCGCC 1 cut(s) 824
Asp700I GAANNNNTTC 3 cut(s) 627, 669, 1326
AspLEI GCGC 2 cut(s) 826, 828
AspS9I GGNCC 2 cut(s) 209, 854
AsuHPI GGTGA 3 cut(s) 422, 810, 1222
AvaI CYCGRG 1 cut(s) 1205
AxyI CCTNAGG 1 cut(s) 1124
BaeGI GKGCMC 2 cut(s) 815, 873
BalI TGGCCA 1 cut(s) 1389
BbvCI CCTCAGC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 490, 891, 1106
BccI CCATC 2 cut(s) 823, 1255
BciT130I CCWGG 5 cut(s) 201, 315, 1159, 1238, 1306
BciVI GTATCC 1 cut(s) 1049
BcoDI GTCTC 2 cut(s) 155, 511
BfaI CTAG 3 cut(s) 51, 296, 876
BfuI GTATCC 1 cut(s) 1049
BisI GCNGC 3 cut(s) 479, 880, 1120
BlpI GCTNAGC 1 cut(s) 930
BlsI GCNGC 3 cut(s) 480, 881, 1121
Bme1390I CCNGG 5 cut(s) 201, 315, 1159, 1238, 1306
BmeT110I CYCGRG 1 cut(s) 1205
BmgT120I GGNCC 2 cut(s) 209, 854
BmiI GGNNCC 2 cut(s) 60, 654
BmrFI CCNGG 5 cut(s) 201, 315, 1159, 1238, 1306
BmsI GCATC 4 cut(s) 373, 536, 697, 974
BoxI GACNNNNGTC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 1259
Bpu10I CCTNAGC 2 cut(s) 244, 574
Bpu1102I GCTNAGC 1 cut(s) 930
BpuEI CTTGAG 3 cut(s) 493, 964, 1036
BsaJI CCNNGG 3 cut(s) 864, 1158, 1284
BsaXI ACNNNNNCTCC 2 cut(s) 1232, 1262
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 206, 314, 820
Bse118I RCCGGY 1 cut(s) 820
Bse1I ACTGG 1 cut(s) 721
Bse21I CCTNAGG 1 cut(s) 1124
Bse3DI GCAATG 4 cut(s) 211, 467, 1042, 1057
BseBI CCWGG 5 cut(s) 201, 315, 1159, 1238, 1306
BseDI CCNNGG 3 cut(s) 864, 1158, 1284
BseGI GGATG 4 cut(s) 385, 592, 619, 751
BseLI CCNNNNNNNGG 4 cut(s) 200, 206, 314, 820
BseMI GCAATG 4 cut(s) 211, 467, 1042, 1057
BseMII CTCAG 6 cut(s) 159, 258, 263, 378, 699, 920
BseNI ACTGG 1 cut(s) 721
BsePI GCGCGC 1 cut(s) 824
BseRI GAGGAG 4 cut(s) 294, 756, 1004, 1256
BseSI GKGCMC 2 cut(s) 815, 873
BseXI GCAGC 3 cut(s) 490, 891, 1106
Bsh1236I CGCG 1 cut(s) 826
BshFI GGCC 6 cut(s) 210, 322, 856, 863, 1337, 1389
BsiHKCI CYCGRG 1 cut(s) 1205
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 2 cut(s) 766, 958
BslI CCNNNNNNNGG 4 cut(s) 200, 206, 314, 820
BsmAI GTCTC 2 cut(s) 155, 511
BsmFI GGGAC 2 cut(s) 766, 958
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 6 cut(s) 210, 322, 856, 863, 1337, 1389
BsoBI CYCGRG 1 cut(s) 1205
Bsp1286I GDGCHC 2 cut(s) 815, 873
Bsp143I GATC 2 cut(s) 4, 1229
Bsp1720I GCTNAGC 1 cut(s) 930
BspACI CCGC 1 cut(s) 1401
BspANI GGCC 6 cut(s) 210, 322, 856, 863, 1337, 1389
BspCNI CTCAG 6 cut(s) 160, 257, 262, 379, 698, 919
BspFNI CGCG 1 cut(s) 826
BspLI GGNNCC 2 cut(s) 60, 654
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 4 cut(s) 211, 467, 1042, 1057
BsrFI RCCGGY 1 cut(s) 820
BsrI ACTGG 1 cut(s) 721
BssAI RCCGGY 1 cut(s) 820
BssECI CCNNGG 3 cut(s) 864, 1158, 1284
BssHII GCGCGC 1 cut(s) 824
BssMI GATC 2 cut(s) 4, 1229
BssT1I CCWWGG 1 cut(s) 864
Bst2UI CCWGG 5 cut(s) 201, 315, 1159, 1238, 1306
Bst6I CTCTTC 2 cut(s) 981, 1092
BstC8I GCNNGC 4 cut(s) 146, 712, 826, 1048
BstDEI CTNAG 9 cut(s) 168, 244, 249, 387, 574, 685, 906, 930, 1124
BstF5I GGATG 4 cut(s) 385, 592, 619, 751
BstFNI CGCG 1 cut(s) 826
BstHHI GCGC 2 cut(s) 826, 828
BstKTI GATC 2 cut(s) 7, 1232
BstMAI GTCTC 2 cut(s) 155, 511
BstMBI GATC 2 cut(s) 4, 1229
BstMWI GCNNNNNNNGC 4 cut(s) 84, 216, 225, 1413
BstNI CCWGG 5 cut(s) 201, 315, 1159, 1238, 1306
BstPAI GACNNNNGTC 1 cut(s) 723
BstSCI CCNGG 5 cut(s) 199, 313, 1157, 1236, 1304
BstSLI GKGCMC 2 cut(s) 815, 873
BstUI CGCG 1 cut(s) 826
BstV1I GCAGC 3 cut(s) 490, 891, 1106
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 1124
BsuI GTATCC 1 cut(s) 1049
BsuRI GGCC 6 cut(s) 210, 322, 856, 863, 1337, 1389
BtsCI GGATG 4 cut(s) 385, 592, 619, 751
BtsIMutI CAGTG 3 cut(s) 343, 728, 1317
Cac8I GCNNGC 4 cut(s) 146, 712, 826, 1048
CfoI GCGC 2 cut(s) 826, 828
Cfr10I RCCGGY 1 cut(s) 820
Cfr13I GGNCC 2 cut(s) 209, 854
CspCI CAANNNNNGTGG 4 cut(s) 51, 86, 1379, 1414
CviAII CATG 2 cut(s) 416, 700
DdeI CTNAG 9 cut(s) 168, 244, 249, 387, 574, 685, 906, 930, 1124
DpnI GATC 2 cut(s) 6, 1231
DpnII GATC 2 cut(s) 4, 1229
EaeI YGGCCR 1 cut(s) 1387
Eam1104I CTCTTC 2 cut(s) 981, 1092
EarI CTCTTC 2 cut(s) 981, 1092
Eco130I CCWWGG 1 cut(s) 864
Eco147I AGGCCT 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 1124
Eco88I CYCGRG 1 cut(s) 1205
EcoRII CCWGG 5 cut(s) 199, 313, 1157, 1236, 1304
EcoT14I CCWWGG 1 cut(s) 864
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 2 cut(s) 419, 703
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 2 cut(s) 766, 958
FatI CATG 2 cut(s) 415, 699
Fnu4HI GCNGC 3 cut(s) 479, 880, 1120
FokI GGATG 4 cut(s) 392, 599, 626, 758
Fsp4HI GCNGC 3 cut(s) 479, 880, 1120
FspBI CTAG 3 cut(s) 51, 296, 876
GlaI GCGC 2 cut(s) 825, 827
GluI GCNGC 3 cut(s) 479, 880, 1120
GsuI CTGGAG 1 cut(s) 1259
HaeIII GGCC 6 cut(s) 210, 322, 856, 863, 1337, 1389
HapII CCGG 1 cut(s) 821
HhaI GCGC 2 cut(s) 826, 828
Hin1II CATG 2 cut(s) 419, 703
Hin6I GCGC 2 cut(s) 824, 826
HinP1I GCGC 2 cut(s) 824, 826
HincII GTYRAC 1 cut(s) 1165
HindII GTYRAC 1 cut(s) 1165
HindIII AAGCTT 5 cut(s) 85, 146, 511, 558, 932
HinfI GANTC 5 cut(s) 239, 346, 419, 763, 956
HpaII CCGG 1 cut(s) 821
HphI GGTGA 3 cut(s) 422, 810, 1222
Hpy166II GTNNAC 1 cut(s) 1165
Hpy188I TCNGA 4 cut(s) 252, 519, 732, 1075
Hpy188III TCNNGA 6 cut(s) 236, 296, 354, 743, 839, 1197
Hpy8I GTNNAC 1 cut(s) 1165
HpyAV CCTTC 5 cut(s) 136, 312, 378, 659, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 216, 225, 1413
HpyF3I CTNAG 9 cut(s) 168, 244, 249, 387, 574, 685, 906, 930, 1124
Hsp92II CATG 2 cut(s) 419, 703
HspAI GCGC 2 cut(s) 824, 826
Kzo9I GATC 2 cut(s) 4, 1229
LmnI GCTCC 3 cut(s) 37, 307, 652
Lsp1109I GCAGC 3 cut(s) 490, 891, 1106
LweI GCATC 4 cut(s) 373, 536, 697, 974
MaeI CTAG 3 cut(s) 51, 296, 876
MaeIII GTNAC 5 cut(s) 265, 277, 464, 794, 1418
MalI GATC 2 cut(s) 6, 1231
MboI GATC 2 cut(s) 4, 1229
MboII GAAGA 9 cut(s) 998, 1109, 1115, 1151, 1225, 1234, 1267, 1270, 1366
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 815, 873
MlsI TGGCCA 1 cut(s) 1389
MluCI AATT 6 cut(s) 229, 627, 637, 1149, 1289, 1326
MluNI TGGCCA 1 cut(s) 1389
MlyI GAGTC 1 cut(s) 757
Mox20I TGGCCA 1 cut(s) 1389
MroXI GAANNNNTTC 3 cut(s) 627, 669, 1326
MscI TGGCCA 1 cut(s) 1389
MseI TTAA 2 cut(s) 150, 474
MslI CAYNNNNRTG 2 cut(s) 744, 808
Msp20I TGGCCA 1 cut(s) 1389
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 5 cut(s) 201, 315, 1159, 1238, 1306
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 5 cut(s) 201, 315, 1159, 1238, 1306
MvnI CGCG 1 cut(s) 826
MwoI GCNNNNNNNGC 4 cut(s) 84, 216, 225, 1413
NdeII GATC 2 cut(s) 4, 1229
NlaIII CATG 2 cut(s) 419, 703
NlaIV GGNNCC 2 cut(s) 60, 654
NmeAIII GCCGAG 1 cut(s) 1309
NmuCI GTSAC 3 cut(s) 277, 464, 794
PaeR7I CTCGAG 1 cut(s) 1205
PalAI GGCGCGCC 1 cut(s) 824
PauI GCGCGC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 322
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 3 cut(s) 627, 669, 1326
PfeI GAWTC 4 cut(s) 239, 346, 419, 956
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 3 cut(s) 480, 881, 1121
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PshAI GACNNNNGTC 1 cut(s) 723
Psp6I CCWGG 5 cut(s) 199, 313, 1157, 1236, 1304
PspGI CCWGG 5 cut(s) 199, 313, 1157, 1236, 1304
PspN4I GGNNCC 2 cut(s) 60, 654
PspPI GGNCC 2 cut(s) 209, 854
PspXI VCTCGAGB 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 824
PvuII CAGCTG 1 cut(s) 167
RseI CAYNNNNRTG 2 cut(s) 744, 808
SaqAI TTAA 2 cut(s) 150, 474
SatI GCNGC 3 cut(s) 479, 880, 1120
Sau3AI GATC 2 cut(s) 4, 1229
Sau96I GGNCC 2 cut(s) 209, 854
SchI GAGTC 1 cut(s) 757
ScrFI CCNGG 5 cut(s) 201, 315, 1159, 1238, 1306
SduI GDGCHC 2 cut(s) 815, 873
SfaNI GCATC 4 cut(s) 373, 536, 697, 974
Sfr274I CTCGAG 1 cut(s) 1205
SgrAI CRCCGGYG 1 cut(s) 820
SgsI GGCGCGCC 1 cut(s) 824
SlaI CTCGAG 1 cut(s) 1205
SmiMI CAYNNNNRTG 2 cut(s) 744, 808
SmlI CTYRAG 4 cut(s) 508, 979, 1015, 1205
SmoI CTYRAG 4 cut(s) 508, 979, 1015, 1205
Sse9I AATT 6 cut(s) 229, 627, 637, 1149, 1289, 1326
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 1401
SspMI CTAG 3 cut(s) 51, 296, 876
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 5 cut(s) 199, 313, 1157, 1236, 1304
StyI CCWWGG 1 cut(s) 864
TaqI TCGA 3 cut(s) 788, 968, 1206
TasI AATT 6 cut(s) 229, 627, 637, 1149, 1289, 1326
TfiI GAWTC 4 cut(s) 239, 346, 419, 956
Tru1I TTAA 2 cut(s) 150, 474
Tru9I TTAA 2 cut(s) 150, 474
TscAI CASTG 3 cut(s) 343, 728, 1324
TseFI GTSAC 3 cut(s) 277, 464, 794
TseI GCWGC 3 cut(s) 478, 879, 1119
Tsp45I GTSAC 3 cut(s) 277, 464, 794
TspDTI ATGAA 2 cut(s) 716, 1268
TspRI CASTG 3 cut(s) 343, 728, 1324
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 2 cut(s) 1149, 1326
XbaI TCTAGA 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 1205
XmnI GAANNNNTTC 3 cut(s) 627, 669, 1326
XspI CTAG 3 cut(s) 51, 296, 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.