Rroxscaffold_2G00099290

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009998
Physical Location & Seq
Reverse (-)
20913554 .. 20916867
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099290.1

Sequence Viewer

Length: 1212 bp
ATGGATCTCACAAGCCCCAGATGTTTCCAAGCTCCAAACTTTATATCATCTAGTGTGGAACCACCATTGGAGAGCAACACAAGCTTCTATGGGAAAAGCAAGAGCAACCCATTTGCAGACACCTTCCCTGACCCACTTTGCAAGCTTAATCTCAAAGAGACAGCTGAGTTTGTCAAGTCATTCCCACTACCACCACCAAGCAATGGCCCAGAAAGCAATAGAAGCAATTTTCTTGATTCCTCAGCTCAGAAAAGAGAGGGAGTAGCCTCTGTTGTCACACACAAGAAAGTTCTAGAAGCTCCTCCCACACCAGGAAGGCCTGTGTTCAGCTTCAGTGTTGGGAATCTTTCCAGAAAGAGCTTCCCTTCAAAGTGGGATGATGCTGAGAAATGGCTCATAAGTAGTTCTTGCCATGATTCTCCTGCTCACCACACCACAAAGGTTAGTAATGCCAAGCAATGTGACAACTTTAAGCAGCAACAAATGGAGGTGTCAAAAGCAGTCTCAAGCTTTCAGAGGTCTGCATCTTTGAACAATCATAATAGTTCTGCCAAAGCTTTCAAAGGGGGCTTAGGCTCTATATGGATGTGCTTCCAAAAGGCTGATGCTGATAAGTTTGTGGATGACATAGAACCAATTCTGCCCAATTTCAAGTATTTGGAGCCAACTAAAGAAGGGTTTCTGTTCAAAAACTCAGCCTGTGAAAACATGAAAGATGCAGGCACAGACCAGTGTCATCAGATAGAACATCGGGATGTTGGGACAGAGATGACTCCTCTTGGCAGTTCAACAACTTCGAGGTGTCACACACCGTTCAAGTGCCCATCACCGGCGCGCCATAACACTCCTGAAAATAGAGCTGCTGCTTGGGAAGAGGAAGAAAATAACAAATGCTGCCTTAGGTATCAAAGAGAAGAAGCAAAAATTCAAGCCTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTCGAGGTGAAGATACAGAAGATGAGATCAAACCTGGAGGAGAAGTTGATGAAGAAGATGGCAGTTGTGCATAGAAAAGCCGAGGAATTGAGAGCAGAAGCCAGGCAACAGCACACTGAACAAATTCACAAGGCCACCAACCAAGCACAGAAGATGATAAGTCGGCACAACCCTCATTTCTCTGGCCACATTTCTTGCGGTTGCTTCCCTTGCAGTAACCACAACCGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

403

Amino Acids

45.24

Weight (kDa)

8.9

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 284 - 382 1.2e-26 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccII CGCG 1 cut(s) 835
AciI CCGC 1 cut(s) 1176
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 1162
AcsI RAATTY 2 cut(s) 924, 1101
AcuI CTGAAG 1 cut(s) 316
AfiI CCNNNNNNNGG 3 cut(s) 203, 311, 829
AgsI TTSAA 8 cut(s) 369, 532, 562, 652, 688, 789, 817, 929
AjnI CCWGG 4 cut(s) 310, 932, 1011, 1079
Alw26I GTCTC 2 cut(s) 152, 508
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 980
AoxI GGCC 4 cut(s) 205, 317, 1110, 1162
ApeKI GCWGC 4 cut(s) 475, 860, 863, 894
ApoI RAATTY 2 cut(s) 924, 1101
AscI GGCGCGCC 1 cut(s) 833
Asp700I GAANNNNTTC 3 cut(s) 636, 678, 1101
AspLEI GCGC 2 cut(s) 835, 837
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 419, 819, 997
AvaI CYCGRG 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 899
BaeGI GKGCMC 1 cut(s) 824
BalI TGGCCA 1 cut(s) 1164
BbvCI CCTCAGC 1 cut(s) 241
BbvI GCAGC 4 cut(s) 487, 847, 850, 881
BccI CCATC 2 cut(s) 832, 1030
BciT130I CCWGG 4 cut(s) 312, 934, 1013, 1081
BcoDI GTCTC 2 cut(s) 152, 508
BfaI CTAG 2 cut(s) 51, 293
BisI GCNGC 4 cut(s) 476, 861, 864, 895
BlsI GCNGC 4 cut(s) 477, 862, 865, 896
Bme1390I CCNGG 4 cut(s) 312, 934, 1013, 1081
BmeT110I CYCGRG 1 cut(s) 980
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 60, 663
BmrFI CCNGG 4 cut(s) 312, 934, 1013, 1081
BmsI GCATC 4 cut(s) 370, 533, 595, 706
BoxI GACNNNNGTC 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 2 cut(s) 241, 571
BpuEI CTTGAG 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 933, 1059
BsaXI ACNNNNNCTCC 2 cut(s) 1007, 1037
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 311, 829
Bse118I RCCGGY 1 cut(s) 829
Bse1I ACTGG 1 cut(s) 730
Bse21I CCTNAGG 1 cut(s) 899
Bse3DI GCAATG 2 cut(s) 208, 464
BseBI CCWGG 4 cut(s) 312, 934, 1013, 1081
BseDI CCNNGG 2 cut(s) 933, 1059
BseGI GGATG 4 cut(s) 382, 591, 628, 760
BseLI CCNNNNNNNGG 3 cut(s) 203, 311, 829
BseMI GCAATG 2 cut(s) 208, 464
BseMII CTCAG 6 cut(s) 156, 255, 260, 375, 708, 980
BseNI ACTGG 1 cut(s) 730
BsePI GCGCGC 1 cut(s) 833
BseRI GAGGAG 3 cut(s) 291, 765, 1031
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 4 cut(s) 487, 847, 850, 881
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 4 cut(s) 207, 319, 1112, 1164
BsiHKCI CYCGRG 1 cut(s) 980
BsiSI CCGG 1 cut(s) 830
BslFI GGGAC 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 203, 311, 829
BsmAI GTCTC 2 cut(s) 152, 508
BsmFI GGGAC 1 cut(s) 775
BsnI GGCC 4 cut(s) 207, 319, 1112, 1164
BsoBI CYCGRG 1 cut(s) 980
Bsp1286I GDGCHC 1 cut(s) 824
Bsp143I GATC 3 cut(s) 4, 1004, 1205
BspACI CCGC 1 cut(s) 1176
BspANI GGCC 4 cut(s) 207, 319, 1112, 1164
BspCNI CTCAG 6 cut(s) 157, 254, 259, 376, 707, 979
BspFNI CGCG 1 cut(s) 835
BspHI TCATGA 1 cut(s) 1208
BspLI GGNNCC 2 cut(s) 60, 663
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 2 cut(s) 208, 464
BsrFI RCCGGY 1 cut(s) 829
BsrI ACTGG 1 cut(s) 730
BssAI RCCGGY 1 cut(s) 829
BssECI CCNNGG 2 cut(s) 933, 1059
BssHII GCGCGC 1 cut(s) 833
BssMI GATC 3 cut(s) 4, 1004, 1205
Bst2UI CCWGG 4 cut(s) 312, 934, 1013, 1081
Bst4CI ACNGT 1 cut(s) 813
Bst6I CTCTTC 1 cut(s) 867
BstC8I GCNNGC 3 cut(s) 143, 721, 835
BstDEI CTNAG 8 cut(s) 165, 241, 246, 384, 571, 694, 899, 966
BstF5I GGATG 4 cut(s) 382, 591, 628, 760
BstFNI CGCG 1 cut(s) 835
BstHHI GCGC 2 cut(s) 835, 837
BstKTI GATC 3 cut(s) 7, 1007, 1208
BstMAI GTCTC 2 cut(s) 152, 508
BstMBI GATC 3 cut(s) 4, 1004, 1205
BstMWI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1188
BstNI CCWGG 4 cut(s) 312, 934, 1013, 1081
BstPAI GACNNNNGTC 1 cut(s) 732
BstSCI CCNGG 4 cut(s) 310, 932, 1011, 1079
BstSLI GKGCMC 1 cut(s) 824
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 4 cut(s) 487, 847, 850, 881
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 899
BsuRI GGCC 4 cut(s) 207, 319, 1112, 1164
BtsCI GGATG 4 cut(s) 382, 591, 628, 760
BtsIMutI CAGTG 3 cut(s) 340, 737, 1092
Cac8I GCNNGC 3 cut(s) 143, 721, 835
CciI TCATGA 1 cut(s) 1208
CfoI GCGC 2 cut(s) 835, 837
Cfr10I RCCGGY 1 cut(s) 829
Cfr13I GGNCC 1 cut(s) 206
CspCI CAANNNNNGTGG 2 cut(s) 1154, 1189
CviAII CATG 3 cut(s) 413, 709, 1209
DdeI CTNAG 8 cut(s) 165, 241, 246, 384, 571, 694, 899, 966
DpnI GATC 3 cut(s) 6, 1006, 1207
DpnII GATC 3 cut(s) 4, 1004, 1205
EaeI YGGCCR 1 cut(s) 1162
Eam1104I CTCTTC 1 cut(s) 867
EarI CTCTTC 1 cut(s) 867
Eco147I AGGCCT 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 899
Eco88I CYCGRG 1 cut(s) 980
EcoRII CCWGG 4 cut(s) 310, 932, 1011, 1079
FaeI CATG 3 cut(s) 416, 712, 1212
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 1 cut(s) 775
FatI CATG 3 cut(s) 412, 708, 1208
Fnu4HI GCNGC 4 cut(s) 476, 861, 864, 895
FokI GGATG 4 cut(s) 389, 598, 635, 767
Fsp4HI GCNGC 4 cut(s) 476, 861, 864, 895
FspBI CTAG 2 cut(s) 51, 293
GlaI GCGC 2 cut(s) 834, 836
GluI GCNGC 4 cut(s) 476, 861, 864, 895
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 4 cut(s) 207, 319, 1112, 1164
HapII CCGG 1 cut(s) 830
HhaI GCGC 2 cut(s) 835, 837
Hin1II CATG 3 cut(s) 416, 712, 1212
Hin6I GCGC 2 cut(s) 833, 835
HinP1I GCGC 2 cut(s) 833, 835
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HindIII AAGCTT 4 cut(s) 82, 143, 508, 555
HinfI GANTC 4 cut(s) 236, 343, 416, 772
HpaII CCGG 1 cut(s) 830
HphI GGTGA 3 cut(s) 419, 819, 997
Hpy166II GTNNAC 1 cut(s) 940
Hpy188I TCNGA 3 cut(s) 249, 516, 741
Hpy188III TCNNGA 7 cut(s) 233, 293, 351, 752, 848, 972, 1209
Hpy8I GTNNAC 1 cut(s) 940
HpyAV CCTTC 4 cut(s) 133, 309, 375, 668
HpyCH4III ACNGT 1 cut(s) 813
HpyCH4V TGCA 7 cut(s) 116, 141, 524, 719, 953, 1048, 1191
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1188
HpyF3I CTNAG 8 cut(s) 165, 241, 246, 384, 571, 694, 899, 966
Hsp92II CATG 3 cut(s) 416, 712, 1212
HspAI GCGC 2 cut(s) 833, 835
Kzo9I GATC 3 cut(s) 4, 1004, 1205
LmnI GCTCC 3 cut(s) 37, 304, 661
Lsp1109I GCAGC 4 cut(s) 487, 847, 850, 881
LweI GCATC 4 cut(s) 370, 533, 595, 706
MaeI CTAG 2 cut(s) 51, 293
MaeIII GTNAC 4 cut(s) 274, 461, 803, 1193
MalI GATC 3 cut(s) 6, 1006, 1207
MboI GATC 3 cut(s) 4, 1004, 1205
MboII GAAGA 8 cut(s) 884, 890, 926, 1000, 1009, 1042, 1045, 1141
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 824
MlsI TGGCCA 1 cut(s) 1164
MluCI AATT 6 cut(s) 226, 636, 646, 924, 1064, 1101
MluNI TGGCCA 1 cut(s) 1164
MlyI GAGTC 1 cut(s) 766
Mox20I TGGCCA 1 cut(s) 1164
MroXI GAANNNNTTC 3 cut(s) 636, 678, 1101
MscI TGGCCA 1 cut(s) 1164
MseI TTAA 2 cut(s) 147, 471
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 1164
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 4 cut(s) 312, 934, 1013, 1081
MvaI CCWGG 4 cut(s) 312, 934, 1013, 1081
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1188
NdeII GATC 3 cut(s) 4, 1004, 1205
NlaIII CATG 3 cut(s) 416, 712, 1212
NlaIV GGNNCC 2 cut(s) 60, 663
NmeAIII GCCGAG 1 cut(s) 1084
NmuCI GTSAC 3 cut(s) 274, 461, 803
PaeR7I CTCGAG 1 cut(s) 980
PagI TCATGA 1 cut(s) 1208
PalAI GGCGCGCC 1 cut(s) 833
PauI GCGCGC 1 cut(s) 833
PceI AGGCCT 1 cut(s) 319
PdmI GAANNNNTTC 3 cut(s) 636, 678, 1101
PfeI GAWTC 3 cut(s) 236, 343, 416
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 4 cut(s) 477, 862, 865, 896
PleI GAGTC 1 cut(s) 766
PpsI GAGTC 1 cut(s) 766
PshAI GACNNNNGTC 1 cut(s) 732
Psp6I CCWGG 4 cut(s) 310, 932, 1011, 1079
PspGI CCWGG 4 cut(s) 310, 932, 1011, 1079
PspN4I GGNNCC 2 cut(s) 60, 663
PspPI GGNCC 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 980
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 753
SaqAI TTAA 2 cut(s) 147, 471
SatI GCNGC 4 cut(s) 476, 861, 864, 895
Sau3AI GATC 3 cut(s) 4, 1004, 1205
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 4 cut(s) 312, 934, 1013, 1081
SduI GDGCHC 1 cut(s) 824
SfaNI GCATC 4 cut(s) 370, 533, 595, 706
Sfr274I CTCGAG 1 cut(s) 980
SgrAI CRCCGGYG 1 cut(s) 829
SgsI GGCGCGCC 1 cut(s) 833
SlaI CTCGAG 1 cut(s) 980
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 2 cut(s) 505, 980
SmoI CTYRAG 2 cut(s) 505, 980
Sse9I AATT 6 cut(s) 226, 636, 646, 924, 1064, 1101
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 1176
SspMI CTAG 2 cut(s) 51, 293
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 4 cut(s) 310, 932, 1011, 1079
TaaI ACNGT 1 cut(s) 813
TaqI TCGA 2 cut(s) 797, 981
TasI AATT 6 cut(s) 226, 636, 646, 924, 1064, 1101
TfiI GAWTC 3 cut(s) 236, 343, 416
Tru1I TTAA 2 cut(s) 147, 471
Tru9I TTAA 2 cut(s) 147, 471
TscAI CASTG 3 cut(s) 340, 737, 1099
TseFI GTSAC 3 cut(s) 274, 461, 803
TseI GCWGC 4 cut(s) 475, 860, 863, 894
Tsp45I GTSAC 3 cut(s) 274, 461, 803
TspDTI ATGAA 2 cut(s) 725, 1043
TspRI CASTG 3 cut(s) 340, 737, 1099
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 924, 1101
XbaI TCTAGA 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 980
XmnI GAANNNNTTC 3 cut(s) 636, 678, 1101
XspI CTAG 2 cut(s) 51, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.