Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000308.1

Orthogroup ID

OG0009998

Physical Location & Seq

Genomic Coordinates Forward (+)

225093 .. 229661

Gene Structure 4569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000308.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atgtcccgatcaagaagtttcggggtgtacaaacagtatgatctgcacaagaaagagcgtgctgctatgctgcaggggcagcaggcgtgcgactatactgcaggggcagtaggtggcacacaggtgcgcaagggctataggagcagcgcacgatgtttccaagctccaaactttatctcatctagtgtggaaccaccaccattggagagcaacacaagcttctatgggaaaagcaagagcaacccatttgcagacaccttccctgacccactttgcaagcttaatctcaaagagacagctgagtttgtcaagtcattcccactaccaccaccaagcaatggcccagaaagcaatagaagcaattttcttgattcctcagctcagaaaagagagggagtaacctctgttgtcacacacaagaaagttctagaagctcctcccacaccaggaaggcctgtgtttagcttcagtgttgggaatctttccagaaagagcttcccttcaaagtgggatgatgctgagaaatggctcataagtagttcttgccatgattctcctgctcaccacaccacaaaggttagtaatgccaagcaatgtgacaactttaagcagcaacaaatggaggtgtcaaaagcagtctcaagctttcagaggtctgcatctttgaacaatcataatagttctgccaaagctttcaaagggggcttaggctctatggatgtgcttccaaaagataagtttgtggatgacatagaaccaattctgcccaatttcaagtatttggagccaactaaagaaggttttctgttcaaaaactcagcctgtgaaaacatgaaagatgcaggcacagaccagtgtcatcagatagaacatcgggatgttgggacagagatgactcctcttggcagttcaacaacttcgaggtgtcacacaccattcaagtgcccatcaccggcgcgccataacactcctgaaaacaggtcagggccattggccttggggcactctagcagcaccaataacaccattgacattactcagttgcaggaatgccatttagctaagcttcaacttgggacacaatatgattcagttgcatcgacttggaactcaagggaagaggaggaaatggaaatatcaaagagcttgaggcattttgacacaggcaatgtatatgcaggcaatggataccgagaaggtatttctgaaccaagagctactgcttgggaagaggaagaaaataacaaatgctgccttaggtatcaaagagaagaagcaaaaattcaagcctgggtcaacctccaaagtgcaaaagcagaagctcattcaagaaagctcgaggtgaagatacagaagatgagatcaaacctggaggagaagttgatgaagaagatggcagttgtgcatagaaaagccgaggaattgagagcagaagccaggcaacaacacactgaacaaattcacaaggccaccaaccaagcacagaagatgataagtcggcacaaccctcatttctctggccacatttcttgcggttgcttcccttgcagtaaccacaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

520

Amino Acids

58.15

Weight (kDa)

8.87

Isoelectric Point (pI)

59.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53860 AT1G53860
fragaria_vesca	FvH4_6g35790 FvH4_6g35790 FvH4_6g35790
malus_domestica	MD09G1173100.v1.1 MD17G1154200.v1.1
prunus_persica	Prupe.3G031200_v2.0.a1 Prupe.3G031200_v2.0.a1
pyrus_communis	pycom09g09050 pycom17g14690
rosa_chinensis	RchiOBHm_Chr2g0147831
rosa_laevigata	RLG00000020282
rosa_multiflora	Rmu_sc0000308.1_g000050
rosa_roxburghii	Rroxscaffold_2G00099290
rosa_rugosa	Rorug02G0402200
rosa_samantha	Rh2AG459200 Rh2BG472500 Rh2CG446600 Rh2DG481500
rosa_wichuraiana	Rw2G037560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccII	CGCG	1 cut(s)	958
AciI	CCGC	1 cut(s)	1533
AcoI	YGGCCR	1 cut(s)	1519
AcsI	RAATTY	2 cut(s)	1281, 1458
AcuI	CTGAAG	1 cut(s)	451
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	338, 446, 952
AjnI	CCWGG	4 cut(s)	445, 1289, 1368, 1436
AleI	CACNNNNGTG	1 cut(s)	122
Alw26I	GTCTC	2 cut(s)	287, 643
Ama87I	CYCGRG	1 cut(s)	1337
AoxI	GGCC	6 cut(s)	340, 452, 986, 993, 1467, 1519
ApeKI	GCWGC	7 cut(s)	62, 70, 79, 144, 610, 1011, 1251
ApoI	RAATTY	2 cut(s)	1281, 1458
AscI	GGCGCGCC	1 cut(s)	956
Asp700I	GAANNNNTTC	3 cut(s)	759, 801, 1458
AspLEI	GCGC	4 cut(s)	129, 149, 958, 960
AspS9I	GGNCC	2 cut(s)	341, 986
AsuHPI	GGTGA	3 cut(s)	554, 942, 1354
AvaI	CYCGRG	1 cut(s)	1337
AxyI	CCTNAGG	1 cut(s)	1256
BaeGI	GKGCMC	2 cut(s)	947, 1005
BalI	TGGCCA	1 cut(s)	1521
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	7 cut(s)	49, 57, 91, 156, 622, 1023, 1238
BccI	CCATC	2 cut(s)	955, 1387
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	4 cut(s)	447, 1291, 1370, 1438
BciVI	GTATCC	1 cut(s)	1181
BcoDI	GTCTC	2 cut(s)	287, 643
BfaI	CTAG	3 cut(s)	183, 428, 1008
BfmI	CTRYAG	3 cut(s)	71, 99, 136
BfuI	GTATCC	1 cut(s)	1181
BisI	GCNGC	7 cut(s)	63, 71, 80, 145, 611, 1012, 1252
BlpI	GCTNAGC	1 cut(s)	1062
BlsI	GCNGC	7 cut(s)	64, 72, 81, 146, 612, 1013, 1253
Bme1390I	CCNGG	4 cut(s)	447, 1291, 1370, 1438
BmeT110I	CYCGRG	1 cut(s)	1337
BmgT120I	GGNCC	2 cut(s)	341, 986
BmiI	GGNNCC	2 cut(s)	192, 786
BmrFI	CCNGG	4 cut(s)	447, 1291, 1370, 1438
BmsI	GCATC	4 cut(s)	505, 668, 829, 1106
BoxI	GACNNNNGTC	1 cut(s)	855
BpmI	CTGGAG	1 cut(s)	1391
Bpu10I	CCTNAGC	2 cut(s)	376, 706
Bpu1102I	GCTNAGC	1 cut(s)	1062
BpuEI	CTTGAG	3 cut(s)	625, 1096, 1168
BsaJI	CCNNGG	3 cut(s)	996, 1290, 1416
BsaXI	ACNNNNNCTCC	2 cut(s)	1364, 1394
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 446, 952
Bse118I	RCCGGY	1 cut(s)	952
Bse1I	ACTGG	1 cut(s)	853
Bse21I	CCTNAGG	1 cut(s)	1256
Bse3DI	GCAATG	4 cut(s)	343, 599, 1174, 1189
BseBI	CCWGG	4 cut(s)	447, 1291, 1370, 1438
BseDI	CCNNGG	3 cut(s)	996, 1290, 1416
BseGI	GGATG	4 cut(s)	517, 724, 751, 883
BseLI	CCNNNNNNNGG	3 cut(s)	338, 446, 952
BseMI	GCAATG	4 cut(s)	343, 599, 1174, 1189
BseMII	CTCAG	6 cut(s)	291, 390, 395, 510, 831, 1052
BseNI	ACTGG	1 cut(s)	853
BsePI	GCGCGC	1 cut(s)	956
BseRI	GAGGAG	4 cut(s)	426, 888, 1136, 1388
BseSI	GKGCMC	2 cut(s)	947, 1005
BseXI	GCAGC	7 cut(s)	49, 57, 91, 156, 622, 1023, 1238
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	958
BshFI	GGCC	6 cut(s)	342, 454, 988, 995, 1469, 1521
BsiHKCI	CYCGRG	1 cut(s)	1337
BsiSI	CCGG	1 cut(s)	953
BslFI	GGGAC	2 cut(s)	898, 1090
BslI	CCNNNNNNNGG	3 cut(s)	338, 446, 952
BsmAI	GTCTC	2 cut(s)	287, 643
BsmFI	GGGAC	2 cut(s)	898, 1090
BsmI	GAATGC	1 cut(s)	1055
BsnI	GGCC	6 cut(s)	342, 454, 988, 995, 1469, 1521
BsoBI	CYCGRG	1 cut(s)	1337
Bsp1286I	GDGCHC	2 cut(s)	947, 1005
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	8, 40, 1361
Bsp1720I	GCTNAGC	1 cut(s)	1062
BspACI	CCGC	1 cut(s)	1533
BspANI	GGCC	6 cut(s)	342, 454, 988, 995, 1469, 1521
BspCNI	CTCAG	6 cut(s)	292, 389, 394, 511, 830, 1051
BspFNI	CGCG	1 cut(s)	958
BspLI	GGNNCC	2 cut(s)	192, 786
BspMAI	CTGCAG	2 cut(s)	75, 103
BsrDI	GCAATG	4 cut(s)	343, 599, 1174, 1189
BsrFI	RCCGGY	1 cut(s)	952
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	853
BssAI	RCCGGY	1 cut(s)	952
BssECI	CCNNGG	3 cut(s)	996, 1290, 1416
BssHII	GCGCGC	1 cut(s)	956
BssMI	GATC	3 cut(s)	8, 40, 1361
BssT1I	CCWWGG	1 cut(s)	996
Bst2UI	CCWGG	4 cut(s)	447, 1291, 1370, 1438
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	2 cut(s)	1113, 1224
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	7 cut(s)	60, 84, 88, 278, 844, 958, 1180
BstDEI	CTNAG	9 cut(s)	300, 376, 381, 519, 706, 817, 1038, 1062, 1256
BstF5I	GGATG	4 cut(s)	517, 724, 751, 883
BstFNI	CGCG	1 cut(s)	958
BstHHI	GCGC	4 cut(s)	129, 149, 958, 960
BstKTI	GATC	3 cut(s)	11, 43, 1364
BstMAI	GTCTC	2 cut(s)	287, 643
BstMBI	GATC	3 cut(s)	8, 40, 1361
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 79, 141, 216, 348, 357, 1545
BstNI	CCWGG	4 cut(s)	447, 1291, 1370, 1438
BstPAI	GACNNNNGTC	1 cut(s)	855
BstSCI	CCNGG	4 cut(s)	445, 1289, 1368, 1436
BstSFI	CTRYAG	3 cut(s)	71, 99, 136
BstSLI	GKGCMC	2 cut(s)	947, 1005
BstUI	CGCG	1 cut(s)	958
BstV1I	GCAGC	7 cut(s)	49, 57, 91, 156, 622, 1023, 1238
Bsu36I	CCTNAGG	1 cut(s)	1256
BsuI	GTATCC	1 cut(s)	1181
BsuRI	GGCC	6 cut(s)	342, 454, 988, 995, 1469, 1521
BtsCI	GGATG	4 cut(s)	517, 724, 751, 883
BtsIMutI	CAGTG	3 cut(s)	475, 860, 1449
Cac8I	GCNNGC	7 cut(s)	60, 84, 88, 278, 844, 958, 1180
CfoI	GCGC	4 cut(s)	129, 149, 958, 960
Cfr10I	RCCGGY	1 cut(s)	952
Cfr13I	GGNCC	2 cut(s)	341, 986
Csp6I	GTAC	1 cut(s)	28
CspCI	CAANNNNNGTGG	4 cut(s)	183, 218, 1511, 1546
CviAII	CATG	2 cut(s)	548, 832
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	9 cut(s)	300, 376, 381, 519, 706, 817, 1038, 1062, 1256
DpnI	GATC	3 cut(s)	10, 42, 1363
DpnII	GATC	3 cut(s)	8, 40, 1361
EaeI	YGGCCR	1 cut(s)	1519
Eam1104I	CTCTTC	2 cut(s)	1113, 1224
EarI	CTCTTC	2 cut(s)	1113, 1224
Eco130I	CCWWGG	1 cut(s)	996
Eco147I	AGGCCT	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	451
Eco81I	CCTNAGG	1 cut(s)	1256
Eco88I	CYCGRG	1 cut(s)	1337
EcoRII	CCWGG	4 cut(s)	445, 1289, 1368, 1436
EcoT14I	CCWWGG	1 cut(s)	996
ErhI	CCWWGG	1 cut(s)	996
FaeI	CATG	2 cut(s)	551, 835
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	2 cut(s)	898, 1090
FatI	CATG	2 cut(s)	547, 831
Fnu4HI	GCNGC	7 cut(s)	63, 71, 80, 145, 611, 1012, 1252
FokI	GGATG	4 cut(s)	524, 731, 758, 890
Fsp4HI	GCNGC	7 cut(s)	63, 71, 80, 145, 611, 1012, 1252
FspBI	CTAG	3 cut(s)	183, 428, 1008
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	4 cut(s)	128, 148, 957, 959
GluI	GCNGC	7 cut(s)	63, 71, 80, 145, 611, 1012, 1252
GsuI	CTGGAG	1 cut(s)	1391
HaeIII	GGCC	6 cut(s)	342, 454, 988, 995, 1469, 1521
HapII	CCGG	1 cut(s)	953
HhaI	GCGC	4 cut(s)	129, 149, 958, 960
Hin1II	CATG	2 cut(s)	551, 835
Hin6I	GCGC	4 cut(s)	127, 147, 956, 958
HinP1I	GCGC	4 cut(s)	127, 147, 956, 958
HincII	GTYRAC	1 cut(s)	1297
HindII	GTYRAC	1 cut(s)	1297
HindIII	AAGCTT	5 cut(s)	217, 278, 643, 690, 1064
HinfI	GANTC	5 cut(s)	371, 478, 551, 895, 1088
HpaII	CCGG	1 cut(s)	953
HphI	GGTGA	3 cut(s)	554, 942, 1354
Hpy166II	GTNNAC	2 cut(s)	28, 1297
Hpy188I	TCNGA	4 cut(s)	384, 651, 864, 1207
Hpy188III	TCNNGA	8 cut(s)	6, 12, 368, 428, 486, 875, 971, 1329
Hpy8I	GTNNAC	2 cut(s)	28, 1297
HpyAV	CCTTC	5 cut(s)	268, 444, 510, 791, 1190
HpyCH4III	ACNGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 79, 141, 216, 348, 357, 1545
HpyF3I	CTNAG	9 cut(s)	300, 376, 381, 519, 706, 817, 1038, 1062, 1256
Hsp92II	CATG	2 cut(s)	551, 835
HspAI	GCGC	4 cut(s)	127, 147, 956, 958
Kzo9I	GATC	3 cut(s)	8, 40, 1361
LmnI	GCTCC	4 cut(s)	141, 169, 439, 784
Lsp1109I	GCAGC	7 cut(s)	49, 57, 91, 156, 622, 1023, 1238
LweI	GCATC	4 cut(s)	505, 668, 829, 1106
MaeI	CTAG	3 cut(s)	183, 428, 1008
MaeIII	GTNAC	5 cut(s)	397, 409, 596, 926, 1550
MalI	GATC	3 cut(s)	10, 42, 1363
MboI	GATC	3 cut(s)	8, 40, 1361
MboII	GAAGA	9 cut(s)	1130, 1241, 1247, 1283, 1357, 1366, 1399, 1402, 1498
MhlI	GDGCHC	2 cut(s)	947, 1005
MlsI	TGGCCA	1 cut(s)	1521
MluCI	AATT	6 cut(s)	361, 759, 769, 1281, 1421, 1458
MluNI	TGGCCA	1 cut(s)	1521
MlyI	GAGTC	1 cut(s)	889
Mox20I	TGGCCA	1 cut(s)	1521
MroXI	GAANNNNTTC	3 cut(s)	759, 801, 1458
MscI	TGGCCA	1 cut(s)	1521
MseI	TTAA	2 cut(s)	282, 606
MslI	CAYNNNNRTG	3 cut(s)	122, 876, 940
Msp20I	TGGCCA	1 cut(s)	1521
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	953
MspR9I	CCNGG	4 cut(s)	447, 1291, 1370, 1438
Mva1269I	GAATGC	1 cut(s)	1055
MvaI	CCWGG	4 cut(s)	447, 1291, 1370, 1438
MvnI	CGCG	1 cut(s)	958
MwoI	GCNNNNNNNGC	7 cut(s)	76, 79, 141, 216, 348, 357, 1545
NdeII	GATC	3 cut(s)	8, 40, 1361
NlaIII	CATG	2 cut(s)	551, 835
NlaIV	GGNNCC	2 cut(s)	192, 786
NmeAIII	GCCGAG	1 cut(s)	1441
NmuCI	GTSAC	3 cut(s)	409, 596, 926
NsbI	TGCGCA	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	1337
PalAI	GGCGCGCC	1 cut(s)	956
PauI	GCGCGC	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	1055
PdmI	GAANNNNTTC	3 cut(s)	759, 801, 1458
PfeI	GAWTC	4 cut(s)	371, 478, 551, 1088
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	7 cut(s)	64, 72, 81, 146, 612, 1013, 1253
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PshAI	GACNNNNGTC	1 cut(s)	855
Psp6I	CCWGG	4 cut(s)	445, 1289, 1368, 1436
PspGI	CCWGG	4 cut(s)	445, 1289, 1368, 1436
PspN4I	GGNNCC	2 cut(s)	192, 786
PspPI	GGNCC	2 cut(s)	341, 986
PspXI	VCTCGAGB	1 cut(s)	1337
PstI	CTGCAG	2 cut(s)	75, 103
PteI	GCGCGC	1 cut(s)	956
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	3 cut(s)	122, 876, 940
SaqAI	TTAA	2 cut(s)	282, 606
SatI	GCNGC	7 cut(s)	63, 71, 80, 145, 611, 1012, 1252
Sau3AI	GATC	3 cut(s)	8, 40, 1361
Sau96I	GGNCC	2 cut(s)	341, 986
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	4 cut(s)	447, 1291, 1370, 1438
SduI	GDGCHC	2 cut(s)	947, 1005
SfaNI	GCATC	4 cut(s)	505, 668, 829, 1106
SfcI	CTRYAG	3 cut(s)	71, 99, 136
Sfr274I	CTCGAG	1 cut(s)	1337
SgrAI	CRCCGGYG	1 cut(s)	952
SgsI	GGCGCGCC	1 cut(s)	956
SlaI	CTCGAG	1 cut(s)	1337
SmiMI	CAYNNNNRTG	3 cut(s)	122, 876, 940
SmlI	CTYRAG	4 cut(s)	640, 1111, 1147, 1337
SmoI	CTYRAG	4 cut(s)	640, 1111, 1147, 1337
Sse9I	AATT	6 cut(s)	361, 759, 769, 1281, 1421, 1458
SseBI	AGGCCT	1 cut(s)	454
SsiI	CCGC	1 cut(s)	1533
SspMI	CTAG	3 cut(s)	183, 428, 1008
StuI	AGGCCT	1 cut(s)	454
StyD4I	CCNGG	4 cut(s)	445, 1289, 1368, 1436
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	3 cut(s)	920, 1100, 1338
TasI	AATT	6 cut(s)	361, 759, 769, 1281, 1421, 1458
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	4 cut(s)	371, 478, 551, 1088
Tru1I	TTAA	2 cut(s)	282, 606
Tru9I	TTAA	2 cut(s)	282, 606
TscAI	CASTG	3 cut(s)	475, 860, 1456
TseFI	GTSAC	3 cut(s)	409, 596, 926
TseI	GCWGC	7 cut(s)	62, 70, 79, 144, 610, 1011, 1251
Tsp45I	GTSAC	3 cut(s)	409, 596, 926
TspDTI	ATGAA	2 cut(s)	848, 1400
TspRI	CASTG	3 cut(s)	475, 860, 1456
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	1281, 1458
XbaI	TCTAGA	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	1337
XmnI	GAANNNNTTC	3 cut(s)	759, 801, 1458
XspI	CTAG	3 cut(s)	183, 428, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.