Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009998

Physical Location & Seq

Genomic Coordinates Forward (+)

60496021 .. 60499591

Gene Structure 3571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG446600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCTCACAAGCCCCAGATGTTTCCAAGCTCCAAACTTTATCTCATCTAGTGTGGAACCACCACCATTGGAGAGCAACACAAGCTTCTATGGGAAAAGCAAGAGCAACCCATTTGCAGACACCTTCCCTGACCCACTTTGCAAGCTTAATCTCAAAGAGACAGCTGAGTTTGTCAAGTCATTCCCACTACCACCACCAAGCAATGGCCCAGAAAGCAATAGAAGCAATTTTCTTGATTCCTCAGCTCAGAAAAGAGAGGGAGTAACCTCTGTTGTCACACACAAGAAAGTTCTAGAAGCTCCTCCCACACCTGGAAGGCCTGTGTTCAGCTTCAGTGTTGGGAATCTTTCCAGAAAGAGCTTCCCTTCAAAGTGGGATGATGCTGAGAAATGGCTCATAAGTAGTTCTTGCCATGATTCTCCTGCTCACCACACCACAAAGGTTAGTAATGCCAAGCAATGTGACAACTTTAAGCAGCAACAAATGGAGGTGTCAAAAGCAGTCTCAAGCTTTCAGAGGTCTGCATCTTTGAACAATCATAATAGTTCTGCCAAAGCTTTCAAAGGGGGCTTAGGCTCTATGGATGTGCTTCCAAAAGATAAGTTTGTGGATGACATAGAACCAATTCTGCCCAATTTCAAGTATTTGGAGCCAACTAAAGAAGGTTTTCTGTTCAAAAACTCAGCCTGTGAAAACATGAAAGATGCAGGCACAGACCAGTGTCATCAGATAGAACATCGGGATGTTGGGACAGAGATGACTCCTCTTGGCAGTTCAACAACTTCGAGGTGTCACACACCATTCAAGTGCCCATCACCGGCACGCCATAACACTCCTGAAAATAGGTCAGGGCCATTGGCCTTGGGGCACTCTAGCAGCACCAATAACACCATTGACATTACTCAGTTGCAGGAATGCCATTTAGCTAAGCTTCAACTTGGGACACAATATGATTCAGTTGCATCGACTTGGAACTCAAGGGAAGAGGAGGAAATGGAAATATCAAAGAGCTTGAGGCATTTTGACACAGGCAATGTATATGCAGGCAATGGATACCGAGAAGGTATTTCTGAACCAAGAGCTACTGCTTGGGAAGAGGAAGAAAATAACAAATGCTGCCTTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

376

Amino Acids

41.63

Weight (kDa)

6.32

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53860 AT1G53860
fragaria_vesca	FvH4_6g35790 FvH4_6g35790 FvH4_6g35790
malus_domestica	MD09G1173100.v1.1 MD17G1154200.v1.1
prunus_persica	Prupe.3G031200_v2.0.a1 Prupe.3G031200_v2.0.a1
pyrus_communis	pycom09g09050 pycom17g14690
rosa_chinensis	RchiOBHm_Chr2g0147831
rosa_laevigata	RLG00000020282
rosa_multiflora	Rmu_sc0000308.1_g000050
rosa_roxburghii	Rroxscaffold_2G00099290
rosa_rugosa	Rorug02G0402200
rosa_samantha	Rh2AG459200 Rh2BG472500 Rh2CG446600 Rh2DG481500
rosa_wichuraiana	Rw2G037560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	206, 314, 820
AgsI	TTSAA	8 cut(s)	372, 535, 565, 643, 679, 780, 808, 938
AjnI	CCWGG	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	155, 511
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	4 cut(s)	208, 320, 854, 861
ApeKI	GCWGC	3 cut(s)	478, 879, 1119
Asp700I	GAANNNNTTC	2 cut(s)	627, 669
AspS9I	GGNCC	2 cut(s)	209, 854
AsuHPI	GGTGA	2 cut(s)	422, 810
AxyI	CCTNAGG	1 cut(s)	1124
BaeGI	GKGCMC	2 cut(s)	815, 873
BbvCI	CCTCAGC	1 cut(s)	244
BbvI	GCAGC	3 cut(s)	490, 891, 1106
BccI	CCATC	1 cut(s)	823
BciT130I	CCWGG	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	1049
BcoDI	GTCTC	2 cut(s)	155, 511
BfaI	CTAG	3 cut(s)	51, 296, 876
BfuI	GTATCC	1 cut(s)	1049
BisI	GCNGC	3 cut(s)	479, 880, 1120
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	3 cut(s)	480, 881, 1121
Bme1390I	CCNGG	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	209, 854
BmiI	GGNNCC	2 cut(s)	60, 654
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	4 cut(s)	373, 536, 697, 974
BoxI	GACNNNNGTC	1 cut(s)	723
Bpu10I	CCTNAGC	2 cut(s)	244, 574
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	3 cut(s)	493, 964, 1036
BsaJI	CCNNGG	1 cut(s)	864
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 314, 820
Bse118I	RCCGGY	1 cut(s)	820
Bse1I	ACTGG	1 cut(s)	721
Bse21I	CCTNAGG	1 cut(s)	1124
Bse3DI	GCAATG	4 cut(s)	211, 467, 1042, 1057
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	4 cut(s)	385, 592, 619, 751
BseLI	CCNNNNNNNGG	3 cut(s)	206, 314, 820
BseMI	GCAATG	4 cut(s)	211, 467, 1042, 1057
BseMII	CTCAG	6 cut(s)	159, 258, 263, 378, 699, 920
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	3 cut(s)	294, 756, 1004
BseSI	GKGCMC	2 cut(s)	815, 873
BseXI	GCAGC	3 cut(s)	490, 891, 1106
BshFI	GGCC	4 cut(s)	210, 322, 856, 863
BsiSI	CCGG	1 cut(s)	821
BslFI	GGGAC	2 cut(s)	766, 958
BslI	CCNNNNNNNGG	3 cut(s)	206, 314, 820
BsmAI	GTCTC	2 cut(s)	155, 511
BsmFI	GGGAC	2 cut(s)	766, 958
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	4 cut(s)	210, 322, 856, 863
Bsp1286I	GDGCHC	2 cut(s)	815, 873
Bsp143I	GATC	1 cut(s)	4
Bsp1720I	GCTNAGC	1 cut(s)	930
BspANI	GGCC	4 cut(s)	210, 322, 856, 863
BspCNI	CTCAG	6 cut(s)	160, 257, 262, 379, 698, 919
BspLI	GGNNCC	2 cut(s)	60, 654
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	4 cut(s)	211, 467, 1042, 1057
BsrFI	RCCGGY	1 cut(s)	820
BsrI	ACTGG	1 cut(s)	721
BssAI	RCCGGY	1 cut(s)	820
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	864
Bst2UI	CCWGG	1 cut(s)	315
Bst6I	CTCTTC	2 cut(s)	981, 1092
BstC8I	GCNNGC	4 cut(s)	146, 712, 826, 1048
BstDEI	CTNAG	9 cut(s)	168, 244, 249, 387, 574, 685, 906, 930, 1124
BstF5I	GGATG	4 cut(s)	385, 592, 619, 751
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	155, 511
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 216, 225
BstNI	CCWGG	1 cut(s)	315
BstPAI	GACNNNNGTC	1 cut(s)	723
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	2 cut(s)	815, 873
BstV1I	GCAGC	3 cut(s)	490, 891, 1106
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	1124
BsuI	GTATCC	1 cut(s)	1049
BsuRI	GGCC	4 cut(s)	210, 322, 856, 863
BtsCI	GGATG	4 cut(s)	385, 592, 619, 751
BtsIMutI	CAGTG	2 cut(s)	343, 728
Cac8I	GCNNGC	4 cut(s)	146, 712, 826, 1048
Cfr10I	RCCGGY	1 cut(s)	820
Cfr13I	GGNCC	2 cut(s)	209, 854
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	2 cut(s)	416, 700
DdeI	CTNAG	9 cut(s)	168, 244, 249, 387, 574, 685, 906, 930, 1124
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	2 cut(s)	981, 1092
EarI	CTCTTC	2 cut(s)	981, 1092
Eco130I	CCWWGG	1 cut(s)	864
Eco147I	AGGCCT	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	1124
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	2 cut(s)	419, 703
FalI	AAGNNNNNCTT	2 cut(s)	394, 426
FaqI	GGGAC	2 cut(s)	766, 958
FatI	CATG	2 cut(s)	415, 699
Fnu4HI	GCNGC	3 cut(s)	479, 880, 1120
FokI	GGATG	4 cut(s)	392, 599, 626, 758
Fsp4HI	GCNGC	3 cut(s)	479, 880, 1120
FspBI	CTAG	3 cut(s)	51, 296, 876
GluI	GCNGC	3 cut(s)	479, 880, 1120
HaeIII	GGCC	4 cut(s)	210, 322, 856, 863
HapII	CCGG	1 cut(s)	821
Hin1II	CATG	2 cut(s)	419, 703
HindIII	AAGCTT	5 cut(s)	85, 146, 511, 558, 932
HinfI	GANTC	5 cut(s)	239, 346, 419, 763, 956
HpaII	CCGG	1 cut(s)	821
HphI	GGTGA	2 cut(s)	422, 810
Hpy188I	TCNGA	4 cut(s)	252, 519, 732, 1075
Hpy188III	TCNNGA	5 cut(s)	236, 296, 354, 743, 839
HpyAV	CCTTC	5 cut(s)	136, 312, 378, 659, 1058
HpyCH4V	TGCA	7 cut(s)	119, 144, 527, 710, 913, 965, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 216, 225
HpyF3I	CTNAG	9 cut(s)	168, 244, 249, 387, 574, 685, 906, 930, 1124
Hsp92II	CATG	2 cut(s)	419, 703
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	3 cut(s)	37, 307, 652
Lsp1109I	GCAGC	3 cut(s)	490, 891, 1106
LweI	GCATC	4 cut(s)	373, 536, 697, 974
MaeI	CTAG	3 cut(s)	51, 296, 876
MaeIII	GTNAC	4 cut(s)	265, 277, 464, 794
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	998, 1109, 1115
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	815, 873
MluCI	AATT	3 cut(s)	229, 627, 637
MlyI	GAGTC	1 cut(s)	757
MroXI	GAANNNNTTC	2 cut(s)	627, 669
MseI	TTAA	2 cut(s)	150, 474
MslI	CAYNNNNRTG	2 cut(s)	744, 808
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	1 cut(s)	821
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	84, 216, 225
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	419, 703
NlaIV	GGNNCC	2 cut(s)	60, 654
NmuCI	GTSAC	3 cut(s)	277, 464, 794
PceI	AGGCCT	1 cut(s)	322
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	2 cut(s)	627, 669
PfeI	GAWTC	4 cut(s)	239, 346, 419, 956
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	3 cut(s)	480, 881, 1121
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PshAI	GACNNNNGTC	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	60, 654
PspPI	GGNCC	2 cut(s)	209, 854
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	744, 808
SaqAI	TTAA	2 cut(s)	150, 474
SatI	GCNGC	3 cut(s)	479, 880, 1120
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	209, 854
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	815, 873
SfaNI	GCATC	4 cut(s)	373, 536, 697, 974
SmiMI	CAYNNNNRTG	2 cut(s)	744, 808
SmlI	CTYRAG	3 cut(s)	508, 979, 1015
SmoI	CTYRAG	3 cut(s)	508, 979, 1015
Sse9I	AATT	3 cut(s)	229, 627, 637
SseBI	AGGCCT	1 cut(s)	322
SspMI	CTAG	3 cut(s)	51, 296, 876
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	864
TaqI	TCGA	2 cut(s)	788, 968
TasI	AATT	3 cut(s)	229, 627, 637
TfiI	GAWTC	4 cut(s)	239, 346, 419, 956
Tru1I	TTAA	2 cut(s)	150, 474
Tru9I	TTAA	2 cut(s)	150, 474
TscAI	CASTG	2 cut(s)	343, 728
TseFI	GTSAC	3 cut(s)	277, 464, 794
TseI	GCWGC	3 cut(s)	478, 879, 1119
Tsp45I	GTSAC	3 cut(s)	277, 464, 794
TspDTI	ATGAA	1 cut(s)	716
TspRI	CASTG	2 cut(s)	343, 728
Van91I	CCANNNNNTGG	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	295
XmnI	GAANNNNTTC	2 cut(s)	627, 669
XspI	CTAG	3 cut(s)	51, 296, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.