MD09G1173100.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0009998
Physical Location & Seq
Reverse (-)
14658762 .. 14662428
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1173100.v1.1.491

Sequence Viewer

Length: 1395 bp
ATGGATCTCACAAGCCCCAGATGCTTTCAACCTCCATCTTTTATCTCATCCAGTGGGGAACCGCCATTGGAGAGCAACCCAAGCTTCTATGGAAAAACCACAAAGGACCCATTTGCAGACACATTTGCAGACCCTCTCTGCAAGCTGAACCTCAGGGAAACCTCTGAGTTTGTCAAGTCACTCCCAGTCCCAAGCAATGCCACATCAGCACAGAGGAGGGAGGGAGGAGTGAGCTCTATGACACAGAGGAGAGCAGCAGAAGCTCCTCCCAGTCCTGGAAGGCCAGTTTTCAGCTTCTCAGTTGGCAACTTTTCCAGAAAGAGCTTTCCTTCAAAGTGGGATGATGCTGAAAAGTGGCTCATAAGCACTTCCTGCCATGACTCTCCTGCTCACACCACCAAGCCGCAATCAGATTCCACAAAGATTTTTAATCCAAAACAATGTGTGGTTTTTTCTGAAAGATCAAGGGTCACAGAGGAAAAGGTCTCAAAGGTGGTCTCAAGCTTTCAAAGATGTGTTTCTTTGAACAATTATCAATCTACCAGAGCTTTCAATGGGGTCTCAACATCAGCTGATGTGCTTCTAAAAGATAAGTTTGTCGATGACATAGAACCAATTTTACCCAATTCCAGGTGCTTAGAGCCAACTAAAGAAGGCTTTCTATTCAAAAACTCAGCCTGTGATGCCATGAAAGATGCAGGCAGCGGCACAGAAGAGGCTCATGATGTACACCATCGAGATGTCGGCACAGAGATGACTCCTCTTGGAAGCTCAACAACTTCAAGGTGCCCCACGCCGTTCAAGTGCTCATCTCCCGCGCGCCACAACACGCCTGCGAACAGGTCAGGGCCATTGTCACTGGGGCACTCTAGCAGCACCAACAACACCATTGACATTGCCCAGCTGCAGGAGTGCCTCGGGACACAGTACGATTCAGTTACATCGAACTGGAGCTCAAGGGAAGAGGAGGAAGTGGAAATATCGAAGAGCTTGAGACATTTCGAAACAAGCAATGCGTGCGGAGAGAGAATTTCTGAAATTAGAGGTGCTGCGTGGGAAGAGGAAGAAAATAACGAATGCTGCCTTAGATATCAGAGAGAAGAGGCCAAAATCCAAGCTTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCGGTCAAGAAAGCTTGAGGTGAAGATACAGAAGATGAGATCGAACCTGGAGGAGAAGCTGATGAAGAGGATGGCAGTAGTTCACAGAAAAGCTGAGGAGTGGAGTGCAACAGCGAGGCAGCAGCACTCTGAACAAATCCACAAGGCCACCAACAATGCAGCACACAAGATGATCACAAATAGGCACAGTCCTCATTTTTCTGGCCACATTTCTTGCGGCTGCTTCCCTTGCAATAACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

465

Amino Acids

51.68

Weight (kDa)

7.87

Isoelectric Point (pI)

64.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 348 - 446 3.1e-22 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 786
AccII CGCG 2 cut(s) 818, 820
AciI CCGC 6 cut(s) 62, 404, 705, 816, 1020, 1368
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 1354
AcsI RAATTY 1 cut(s) 1029
AfaI GTAC 2 cut(s) 729, 929
AfiI CCNNNNNNNGG 4 cut(s) 275, 630, 907, 1120
AgsI TTSAA 8 cut(s) 29, 333, 509, 526, 553, 667, 783, 802
AjnI CCWGG 3 cut(s) 274, 629, 1197
Alw21I GWGCWC 3 cut(s) 236, 809, 956
Alw26I GTCTC 4 cut(s) 490, 502, 565, 988
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 917
AoxI GGCC 5 cut(s) 281, 848, 1104, 1296, 1354
ApoI RAATTY 1 cut(s) 1029
Asp700I GAANNNNTTC 1 cut(s) 657
AspLEI GCGC 2 cut(s) 820, 822
AspS9I GGNCC 2 cut(s) 106, 848
AsuHPI GGTGA 1 cut(s) 1183
AsuII TTCGAA 1 cut(s) 1002
AvaI CYCGRG 1 cut(s) 917
AvaII GGWCC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 152
BaeGI GKGCMC 2 cut(s) 791, 867
BalI TGGCCA 1 cut(s) 1356
BanI GGYRCC 1 cut(s) 786
BanII GRGCYC 2 cut(s) 236, 956
Bbv12I GWGCWC 3 cut(s) 236, 809, 956
BbvCI CCTCAGC 1 cut(s) 1245
BccI CCATC 3 cut(s) 43, 741, 1216
BceAI ACGGC 1 cut(s) 781
BciT130I CCWGG 3 cut(s) 276, 631, 1199
BclI TGATCA 1 cut(s) 1323
BcoDI GTCTC 4 cut(s) 490, 502, 565, 988
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 1 cut(s) 905
Bme1390I CCNGG 3 cut(s) 276, 631, 1199
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 917
BmgT120I GGNCC 2 cut(s) 106, 848
BmiI GGNNCC 3 cut(s) 60, 108, 788
BmrFI CCNGG 3 cut(s) 276, 631, 1199
BmrI ACTGGG 3 cut(s) 179, 264, 869
BmsI GCATC 4 cut(s) 11, 334, 673, 685
BmuI ACTGGG 3 cut(s) 179, 264, 869
BpmI CTGGAG 2 cut(s) 970, 1220
Bpu10I CCTNAGC 1 cut(s) 1245
Bpu14I TTCGAA 1 cut(s) 1002
BpuEI CTTGAG 4 cut(s) 484, 940, 1012, 1187
BsaI GGTCTC 3 cut(s) 490, 502, 565
BsaJI CCNNGG 1 cut(s) 916
Bsc4I CCNNNNNNNGG 4 cut(s) 275, 630, 907, 1120
Bse1I ACTGG 6 cut(s) 51, 185, 270, 284, 864, 953
Bse21I CCTNAGG 1 cut(s) 152
Bse3DI GCAATG 3 cut(s) 202, 894, 1018
BseBI CCWGG 3 cut(s) 276, 631, 1199
BseDI CCNNGG 1 cut(s) 916
BseGI GGATG 3 cut(s) 47, 346, 1227
BseLI CCNNNNNNNGG 4 cut(s) 275, 630, 907, 1120
BseMI GCAATG 3 cut(s) 202, 894, 1018
BseMII CTCAG 5 cut(s) 156, 166, 312, 687, 1236
BseNI ACTGG 6 cut(s) 51, 185, 270, 284, 864, 953
BsePI GCGCGC 1 cut(s) 818
BseRI GAGGAG 8 cut(s) 229, 240, 255, 262, 750, 980, 1217, 1262
BseSI GKGCMC 2 cut(s) 791, 867
BseYI CCCAGC 1 cut(s) 900
Bsh1236I CGCG 2 cut(s) 818, 820
BshFI GGCC 5 cut(s) 283, 850, 1106, 1298, 1356
BshNI GGYRCC 1 cut(s) 786
BsiHKAI GWGCWC 3 cut(s) 236, 809, 956
BsiHKCI CYCGRG 1 cut(s) 917
BslFI GGGAC 2 cut(s) 173, 934
BslI CCNNNNNNNGG 4 cut(s) 275, 630, 907, 1120
BsmAI GTCTC 4 cut(s) 490, 502, 565, 988
BsmFI GGGAC 2 cut(s) 173, 934
BsmI GAATGC 1 cut(s) 1082
BsnI GGCC 5 cut(s) 283, 850, 1106, 1298, 1356
Bso31I GGTCTC 3 cut(s) 490, 502, 565
BsoBI CYCGRG 1 cut(s) 917
Bsp119I TTCGAA 1 cut(s) 1002
Bsp1286I GDGCHC 5 cut(s) 236, 791, 809, 867, 956
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 4 cut(s) 4, 461, 1190, 1323
BspACI CCGC 6 cut(s) 62, 404, 705, 816, 1020, 1368
BspANI GGCC 5 cut(s) 283, 850, 1106, 1298, 1356
BspCNI CTCAG 5 cut(s) 157, 165, 311, 686, 1237
BspFNI CGCG 2 cut(s) 818, 820
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 60, 108, 788
BspMAI CTGCAG 1 cut(s) 909
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 980
BspT104I TTCGAA 1 cut(s) 1002
BspT107I GGYRCC 1 cut(s) 786
BspTNI GGTCTC 3 cut(s) 490, 502, 565
BsrDI GCAATG 3 cut(s) 202, 894, 1018
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 6 cut(s) 51, 185, 270, 284, 864, 953
BssECI CCNNGG 1 cut(s) 916
BssHII GCGCGC 1 cut(s) 818
BssMI GATC 4 cut(s) 4, 461, 1190, 1323
Bst2UI CCWGG 3 cut(s) 276, 631, 1199
Bst4CI ACNGT 2 cut(s) 927, 1340
Bst6I CTCTTC 6 cut(s) 708, 957, 980, 1053, 1095, 1211
BstAPI GCANNNNNTGC 2 cut(s) 372, 1017
BstAUI TGTACA 1 cut(s) 727
BstBI TTCGAA 1 cut(s) 1002
BstC8I GCNNGC 5 cut(s) 143, 700, 820, 834, 1018
BstDEI CTNAG 7 cut(s) 152, 165, 298, 637, 673, 1085, 1245
BstF5I GGATG 3 cut(s) 47, 346, 1227
BstFNI CGCG 2 cut(s) 818, 820
BstHHI GCGC 2 cut(s) 820, 822
BstKTI GATC 4 cut(s) 7, 464, 1193, 1326
BstMAI GTCTC 4 cut(s) 490, 502, 565, 988
BstMBI GATC 4 cut(s) 4, 461, 1190, 1323
BstMWI GCNNNNNNNGC 8 cut(s) 21, 81, 206, 260, 372, 683, 1017, 1380
BstNI CCWGG 3 cut(s) 276, 631, 1199
BstSCI CCNGG 3 cut(s) 274, 629, 1197
BstSFI CTRYAG 1 cut(s) 905
BstSLI GKGCMC 2 cut(s) 791, 867
BstUI CGCG 2 cut(s) 818, 820
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 5 cut(s) 283, 850, 1106, 1298, 1356
BtsCI GGATG 3 cut(s) 47, 346, 1227
BtsIMutI CAGTG 2 cut(s) 58, 857
Cac8I GCNNGC 5 cut(s) 143, 700, 820, 834, 1018
CciI TCATGA 1 cut(s) 721
CfoI GCGC 2 cut(s) 820, 822
Cfr13I GGNCC 2 cut(s) 106, 848
Csp6I GTAC 2 cut(s) 728, 928
CspCI CAANNNNNGTGG 2 cut(s) 1346, 1381
CviAII CATG 3 cut(s) 377, 688, 722
CviQI GTAC 2 cut(s) 728, 928
DdeI CTNAG 7 cut(s) 152, 165, 298, 637, 673, 1085, 1245
DpnI GATC 4 cut(s) 6, 463, 1192, 1325
DpnII GATC 4 cut(s) 4, 461, 1190, 1323
EaeI YGGCCR 1 cut(s) 1354
Eam1104I CTCTTC 6 cut(s) 708, 957, 980, 1053, 1095, 1211
EarI CTCTTC 6 cut(s) 708, 957, 980, 1053, 1095, 1211
Ecl136II GAGCTC 2 cut(s) 234, 954
Eco24I GRGCYC 2 cut(s) 236, 956
Eco31I GGTCTC 3 cut(s) 490, 502, 565
Eco32I GATATC 1 cut(s) 1091
Eco47I GGWCC 1 cut(s) 106
Eco53kI GAGCTC 2 cut(s) 234, 954
Eco81I CCTNAGG 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 917
EcoICRI GAGCTC 2 cut(s) 234, 954
EcoO109I RGGNCCY 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 274, 629, 1197
EcoRV GATATC 1 cut(s) 1091
EcoT38I GRGCYC 2 cut(s) 236, 956
FaeI CATG 3 cut(s) 380, 691, 725
FaiI YATR 7 cut(s) 90, 239, 362, 378, 608, 689, 723
FaqI GGGAC 2 cut(s) 173, 934
FatI CATG 3 cut(s) 376, 687, 721
FauI CCCGC 1 cut(s) 823
FbaI TGATCA 1 cut(s) 1323
FokI GGATG 3 cut(s) 34, 353, 1234
FriOI GRGCYC 2 cut(s) 236, 956
FspBI CTAG 1 cut(s) 870
GlaI GCGC 2 cut(s) 819, 821
GsaI CCCAGC 1 cut(s) 904
GsuI CTGGAG 2 cut(s) 970, 1220
HaeIII GGCC 5 cut(s) 283, 850, 1106, 1298, 1356
HhaI GCGC 2 cut(s) 820, 822
Hin1II CATG 3 cut(s) 380, 691, 725
Hin6I GCGC 2 cut(s) 818, 820
HinP1I GCGC 2 cut(s) 818, 820
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HindIII AAGCTT 4 cut(s) 82, 502, 1116, 1163
HinfI GANTC 4 cut(s) 380, 413, 757, 932
HphI GGTGA 1 cut(s) 1183
Hpy166II GTNNAC 3 cut(s) 730, 1126, 1234
Hpy188I TCNGA 6 cut(s) 166, 412, 457, 1036, 1095, 1282
Hpy188III TCNNGA 5 cut(s) 315, 722, 737, 919, 1158
Hpy8I GTNNAC 3 cut(s) 730, 1126, 1234
HpyAV CCTTC 3 cut(s) 273, 339, 647
HpyCH4III ACNGT 2 cut(s) 927, 1340
HpyCH4V TGCA 9 cut(s) 116, 128, 141, 698, 907, 1139, 1259, 1310, 1383
HpyF10VI GCNNNNNNNGC 8 cut(s) 21, 81, 206, 260, 372, 683, 1017, 1380
HpyF3I CTNAG 7 cut(s) 152, 165, 298, 637, 673, 1085, 1245
Hsp92II CATG 3 cut(s) 380, 691, 725
HspAI GCGC 2 cut(s) 818, 820
Ksp22I TGATCA 1 cut(s) 1323
Kzo9I GATC 4 cut(s) 4, 461, 1190, 1323
LguI GCTCTTC 1 cut(s) 980
LmnI GCTCC 2 cut(s) 268, 951
LweI GCATC 4 cut(s) 11, 334, 673, 685
MaeI CTAG 1 cut(s) 870
MaeIII GTNAC 4 cut(s) 177, 469, 855, 937
MalI GATC 4 cut(s) 6, 463, 1192, 1325
MboI GATC 4 cut(s) 4, 461, 1190, 1323
MboII GAAGA 9 cut(s) 725, 974, 997, 1070, 1076, 1112, 1186, 1195, 1228
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 5 cut(s) 236, 791, 809, 867, 956
MlsI TGGCCA 1 cut(s) 1356
MluCI AATT 5 cut(s) 529, 615, 625, 1029, 1038
MluNI TGGCCA 1 cut(s) 1356
MlyI GAGTC 2 cut(s) 374, 751
Mox20I TGGCCA 1 cut(s) 1356
MroXI GAANNNNTTC 1 cut(s) 657
MscI TGGCCA 1 cut(s) 1356
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 738, 752
Msp20I TGGCCA 1 cut(s) 1356
MspA1I CMGCKG 3 cut(s) 572, 705, 904
MspR9I CCNGG 3 cut(s) 276, 631, 1199
Mva1269I GAATGC 1 cut(s) 1082
MvaI CCWGG 3 cut(s) 276, 631, 1199
MvnI CGCG 2 cut(s) 818, 820
MwoI GCNNNNNNNGC 8 cut(s) 21, 81, 206, 260, 372, 683, 1017, 1380
NdeII GATC 4 cut(s) 4, 461, 1190, 1323
NlaIII CATG 3 cut(s) 380, 691, 725
NlaIV GGNNCC 3 cut(s) 60, 108, 788
NmuCI GTSAC 3 cut(s) 177, 469, 855
NspV TTCGAA 1 cut(s) 1002
PagI TCATGA 1 cut(s) 721
PauI GCGCGC 1 cut(s) 818
PciSI GCTCTTC 1 cut(s) 980
PctI GAATGC 1 cut(s) 1082
PdmI GAANNNNTTC 1 cut(s) 657
PfeI GAWTC 2 cut(s) 413, 932
PfoI TCCNGGA 1 cut(s) 274
PleI GAGTC 2 cut(s) 374, 751
PpsI GAGTC 2 cut(s) 374, 751
PpuMI RGGWCCY 1 cut(s) 106
Psp124BI GAGCTC 2 cut(s) 236, 956
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 3 cut(s) 274, 629, 1197
PspFI CCCAGC 1 cut(s) 900
PspGI CCWGG 3 cut(s) 274, 629, 1197
PspN4I GGNNCC 3 cut(s) 60, 108, 788
PspPI GGNCC 2 cut(s) 106, 848
PspPPI RGGWCCY 1 cut(s) 106
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstI CTGCAG 1 cut(s) 909
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 818
PvuII CAGCTG 2 cut(s) 572, 904
RsaI GTAC 2 cut(s) 729, 929
RsaNI GTAC 2 cut(s) 728, 928
RseI CAYNNNNRTG 2 cut(s) 738, 752
SacI GAGCTC 2 cut(s) 236, 956
SapI GCTCTTC 1 cut(s) 980
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 4 cut(s) 4, 461, 1190, 1323
Sau96I GGNCC 2 cut(s) 106, 848
SchI GAGTC 2 cut(s) 374, 751
ScrFI CCNGG 3 cut(s) 276, 631, 1199
SduI GDGCHC 5 cut(s) 236, 791, 809, 867, 956
SfaNI GCATC 4 cut(s) 11, 334, 673, 685
SfcI CTRYAG 1 cut(s) 905
SfuI TTCGAA 1 cut(s) 1002
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 2 cut(s) 738, 752
SmlI CTYRAG 4 cut(s) 499, 955, 991, 1166
SmoI CTYRAG 4 cut(s) 499, 955, 991, 1166
Sse9I AATT 5 cut(s) 529, 615, 625, 1029, 1038
SsiI CCGC 6 cut(s) 62, 404, 705, 816, 1020, 1368
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 2 cut(s) 236, 956
StyD4I CCNGG 3 cut(s) 274, 629, 1197
TaaI ACNGT 2 cut(s) 927, 1340
TaqI TCGA 6 cut(s) 600, 736, 944, 983, 1002, 1193
TaqII GACCGA 1 cut(s) 1143
TasI AATT 5 cut(s) 529, 615, 625, 1029, 1038
TatI WGTACW 1 cut(s) 727
TauI GCSGC 3 cut(s) 406, 708, 1371
TfiI GAWTC 2 cut(s) 413, 932
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 58, 864
TseFI GTSAC 3 cut(s) 177, 469, 855
Tsp45I GTSAC 3 cut(s) 177, 469, 855
TspDTI ATGAA 2 cut(s) 704, 1229
TspRI CASTG 2 cut(s) 58, 864
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 1029
XmnI GAANNNNTTC 1 cut(s) 657
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.