Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009998

Physical Location & Seq

Genomic Coordinates Forward (+)

28239088 .. 28242799

Gene Structure 3712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35790.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGATCTTACAAGCCCCAGATGTTTCCAAGCTCCAAACTTTATCTCATCTAGTGTGGAACCACAATTGGAGAGCAACACAAGCTTCTATGGGAAAAGCAAGAGCAACCCATTTGCAGACACCTTCCCTGACCCACTTTGCAAGCTTAATCTCAAAGAGACAGCTGAGTTTGTCAAGTCATTCCCACTGCCACCACCAAGCATTAATGGCCCAGAAAGCAATAGGAGCAATTATCTTGACTCCTCAGCTCAGAAAAGAGAGGGAGTGACCTCAGTTGTCACACACAAGAAAGTTCTAGAAGCTCCTCCCACACCCGGAAGGCCTGTGTTCAGCTTCAGTGTTGGTAATCTTTCCAGGAAGAGCTTCCCTTCAAAGTGGGATGATGCTGAGAAATGGCTCATAAACAGTTCTTGCCATGATTCTCCTGCTCACAACTCCACAAAGGTTAGCAATGCCAAGCAATGTGATACCTTTAAGCAGCACCAAATGGAGGTGTCAAAAGCAGTCTCAAGCTTTCAGAGGTCTGCTTCTTTGAACAATCATAACAGTTCTGCCAAAGCTTTCAAGGGGGGCTTAGGCTCAATGGATGTGCTTCCAAAAGATAAGTTTGTAGATGACATAGAGCCAGTTCTGCCAAATTTCAAGTATTTGGAGCCAACTAGAGAAGGGTTTCTATTCAAAAACCCAGCCTGCGAAACCATGAAAGATGCAGGCACAGACCAGTGTGATCAAATAGAACATCGGGATGTTGGGACAGAGATGACTCCTCTTGGCAGTTCAACAACTTCGAGGTGCCACACACCATTCAAGTACCCATCACCAGCACGCCATAACACTCCTGAAAATAGGTCAGGCCCATTGGCCTTGGGGCACTCTAGCAGCACCAGTAACACCATTGACATTACTCAGTTGCAGGAATGCCATTTAGCTAAGCTTCAACTTGGGACACAATATGATTCAGTTGCGTCGACTTGGAACTCAAGGGAAGAGGAAGAAATGGAAATATCAAAGAGCTTGAGGCATTTTGACACAGGCAATGTATACGCAGGCAATGGATACCGAGAAGGTATGTCTGAACCAAGAGCTGCTGCTTGGGAAGAGGAAGAAAATAACAAATGCTGCCTTAGGTATCAGAGGGAAGAAGCAAAAATTCAAGCCTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTTGAGGTGAAGATACAGAAGATGAGATCAAACCTGGAGGAGAAGTTGATGAGGAAGATGGCAGTTGTGCATAGAAAAGCCGAGGAATTGAGAGCAGAAGCCAGGCAACAACACACTGAGCAAATTCACAAGGCAACCAACCAAGCACAGAAGATGATAAGTCGGCACAACCCTCATTTTTCAGGCCATATTTCTTGCGGGTGCTTCCCTTGCAGTAACCACAACCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

479

Amino Acids

53.59

Weight (kDa)

8.32

Isoelectric Point (pI)

60.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53860 AT1G53860
fragaria_vesca	FvH4_6g35790 FvH4_6g35790 FvH4_6g35790
malus_domestica	MD09G1173100.v1.1 MD17G1154200.v1.1
prunus_persica	Prupe.3G031200_v2.0.a1 Prupe.3G031200_v2.0.a1
pyrus_communis	pycom09g09050 pycom17g14690
rosa_chinensis	RchiOBHm_Chr2g0147831
rosa_laevigata	RLG00000020282
rosa_multiflora	Rmu_sc0000308.1_g000050
rosa_roxburghii	Rroxscaffold_2G00099290
rosa_rugosa	Rorug02G0402200
rosa_samantha	Rh2AG459200 Rh2BG472500 Rh2CG446600 Rh2DG481500
rosa_wichuraiana	Rw2G037560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	792
AccI	GTMKAC	2 cut(s)	968, 1041
AciI	CCGC	1 cut(s)	1401
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	637, 1149, 1326
AcuI	CTGAAG	1 cut(s)	319
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	2 cut(s)	314, 490
AgsI	TTSAA	9 cut(s)	372, 535, 565, 643, 679, 780, 808, 938, 1154
AjnI	CCWGG	4 cut(s)	353, 1157, 1236, 1304
Alw26I	GTCTC	2 cut(s)	152, 511
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	5 cut(s)	208, 320, 853, 861, 1387
ApeKI	GCWGC	5 cut(s)	478, 879, 1085, 1088, 1119
ApoI	RAATTY	3 cut(s)	637, 1149, 1326
AseI	ATTAAT	1 cut(s)	204
Asp700I	GAANNNNTTC	2 cut(s)	362, 669
AspS9I	GGNCC	2 cut(s)	209, 854
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	810, 1222
AxyI	CCTNAGG	1 cut(s)	1124
BaeGI	GKGCMC	1 cut(s)	873
BanI	GGYRCC	1 cut(s)	792
BbvCI	CCTCAGC	1 cut(s)	244
BbvI	GCAGC	5 cut(s)	490, 891, 1072, 1075, 1106
BccI	CCATC	2 cut(s)	823, 1255
BciT130I	CCWGG	4 cut(s)	355, 1159, 1238, 1306
BciVI	GTATCC	1 cut(s)	1049
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	152, 511
BfaI	CTAG	4 cut(s)	51, 296, 660, 876
BfuI	GTATCC	1 cut(s)	1049
BisI	GCNGC	5 cut(s)	479, 880, 1086, 1089, 1120
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	5 cut(s)	480, 881, 1087, 1090, 1121
Bme1390I	CCNGG	5 cut(s)	315, 355, 1159, 1238, 1306
BmgT120I	GGNCC	2 cut(s)	209, 854
BmiI	GGNNCC	3 cut(s)	60, 654, 794
BmrFI	CCNGG	5 cut(s)	315, 355, 1159, 1238, 1306
BmsI	GCATC	2 cut(s)	373, 697
BpmI	CTGGAG	1 cut(s)	1259
Bpu10I	CCTNAGC	2 cut(s)	244, 574
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	4 cut(s)	493, 964, 1036, 1226
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	864, 1158, 1284
BsaXI	ACNNNNNCTCC	2 cut(s)	1232, 1262
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 490
Bse1I	ACTGG	3 cut(s)	626, 721, 885
Bse21I	CCTNAGG	1 cut(s)	1124
Bse3DI	GCAATG	4 cut(s)	457, 467, 1042, 1057
BseBI	CCWGG	4 cut(s)	355, 1159, 1238, 1306
BseDI	CCNNGG	3 cut(s)	864, 1158, 1284
BseGI	GGATG	3 cut(s)	385, 592, 751
BseLI	CCNNNNNNNGG	2 cut(s)	314, 490
BseMI	GCAATG	4 cut(s)	457, 467, 1042, 1057
BseMII	CTCAG	8 cut(s)	156, 258, 263, 285, 378, 920, 1205, 1311
BseNI	ACTGG	3 cut(s)	626, 721, 885
BseRI	GAGGAG	4 cut(s)	232, 294, 756, 1256
BseSI	GKGCMC	1 cut(s)	873
BseXI	GCAGC	5 cut(s)	490, 891, 1072, 1075, 1106
BseYI	CCCAGC	1 cut(s)	685
BshFI	GGCC	5 cut(s)	210, 322, 855, 863, 1389
BshNI	GGYRCC	1 cut(s)	792
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	2 cut(s)	766, 958
BslI	CCNNNNNNNGG	2 cut(s)	314, 490
BsmAI	GTCTC	2 cut(s)	152, 511
BsmFI	GGGAC	2 cut(s)	766, 958
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	5 cut(s)	210, 322, 855, 863, 1389
Bsp1286I	GDGCHC	1 cut(s)	873
Bsp143I	GATC	4 cut(s)	4, 727, 1229, 1430
Bsp1720I	GCTNAGC	1 cut(s)	930
BspACI	CCGC	1 cut(s)	1401
BspANI	GGCC	5 cut(s)	210, 322, 855, 863, 1389
BspCNI	CTCAG	8 cut(s)	157, 257, 262, 284, 379, 919, 1204, 1312
BspHI	TCATGA	1 cut(s)	1433
BspLI	GGNNCC	3 cut(s)	60, 654, 794
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	792
BsrDI	GCAATG	4 cut(s)	457, 467, 1042, 1057
BsrI	ACTGG	3 cut(s)	626, 721, 885
BssECI	CCNNGG	3 cut(s)	864, 1158, 1284
BssMI	GATC	4 cut(s)	4, 727, 1229, 1430
BssNAI	GTATAC	1 cut(s)	1042
BssT1I	CCWWGG	1 cut(s)	864
Bst1107I	GTATAC	1 cut(s)	1042
Bst2UI	CCWGG	4 cut(s)	355, 1159, 1238, 1306
Bst4CI	ACNGT	2 cut(s)	407, 548
Bst6I	CTCTTC	3 cut(s)	353, 981, 1092
BstC8I	GCNNGC	5 cut(s)	143, 691, 712, 826, 1048
BstF5I	GGATG	3 cut(s)	385, 592, 751
BstKTI	GATC	4 cut(s)	7, 730, 1232, 1433
BstMAI	GTCTC	2 cut(s)	152, 511
BstMBI	GATC	4 cut(s)	4, 727, 1229, 1430
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 207, 216, 225, 631, 1413
BstNI	CCWGG	4 cut(s)	355, 1159, 1238, 1306
BstSCI	CCNGG	5 cut(s)	313, 353, 1157, 1236, 1304
BstSLI	GKGCMC	1 cut(s)	873
BstV1I	GCAGC	5 cut(s)	490, 891, 1072, 1075, 1106
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZ17I	GTATAC	1 cut(s)	1042
Bsu36I	CCTNAGG	1 cut(s)	1124
BsuI	GTATCC	1 cut(s)	1049
BsuRI	GGCC	5 cut(s)	210, 322, 855, 863, 1389
BtsCI	GGATG	3 cut(s)	385, 592, 751
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	4 cut(s)	185, 343, 728, 1317
Cac8I	GCNNGC	5 cut(s)	143, 691, 712, 826, 1048
CciI	TCATGA	1 cut(s)	1433
Cfr13I	GGNCC	2 cut(s)	209, 854
CseI	GACGC	1 cut(s)	954
Csp6I	GTAC	1 cut(s)	811
CviAII	CATG	3 cut(s)	416, 700, 1434
CviQI	GTAC	1 cut(s)	811
DpnI	GATC	4 cut(s)	6, 729, 1231, 1432
DpnII	GATC	4 cut(s)	4, 727, 1229, 1430
Eam1104I	CTCTTC	3 cut(s)	353, 981, 1092
EarI	CTCTTC	3 cut(s)	353, 981, 1092
Eco130I	CCWWGG	1 cut(s)	864
Eco147I	AGGCCT	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	319
Eco81I	CCTNAGG	1 cut(s)	1124
EcoRII	CCWGG	4 cut(s)	353, 1157, 1236, 1304
EcoT14I	CCWWGG	1 cut(s)	864
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	3 cut(s)	419, 703, 1437
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	2 cut(s)	766, 958
FatI	CATG	3 cut(s)	415, 699, 1433
FauI	CCCGC	1 cut(s)	1394
FbaI	TGATCA	1 cut(s)	727
FblI	GTMKAC	2 cut(s)	968, 1041
Fnu4HI	GCNGC	5 cut(s)	479, 880, 1086, 1089, 1120
FokI	GGATG	3 cut(s)	392, 599, 758
Fsp4HI	GCNGC	5 cut(s)	479, 880, 1086, 1089, 1120
FspBI	CTAG	4 cut(s)	51, 296, 660, 876
GluI	GCNGC	5 cut(s)	479, 880, 1086, 1089, 1120
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	1 cut(s)	1259
HaeIII	GGCC	5 cut(s)	210, 322, 855, 863, 1389
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	954
Hin1II	CATG	3 cut(s)	419, 703, 1437
HincII	GTYRAC	2 cut(s)	969, 1165
HindII	GTYRAC	2 cut(s)	969, 1165
HindIII	AAGCTT	6 cut(s)	82, 143, 511, 558, 932, 1202
HinfI	GANTC	4 cut(s)	239, 419, 763, 956
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	2 cut(s)	810, 1222
Hpy166II	GTNNAC	3 cut(s)	969, 1042, 1165
Hpy188I	TCNGA	4 cut(s)	252, 519, 1075, 1134
Hpy188III	TCNNGA	6 cut(s)	236, 296, 743, 839, 1197, 1434
Hpy8I	GTNNAC	3 cut(s)	969, 1042, 1165
Hpy99I	CGWCG	1 cut(s)	970
HpyAV	CCTTC	5 cut(s)	133, 312, 378, 659, 1058
HpyCH4III	ACNGT	2 cut(s)	407, 548
HpyCH4V	TGCA	7 cut(s)	116, 141, 710, 913, 1178, 1273, 1416
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 207, 216, 225, 631, 1413
Hsp92II	CATG	3 cut(s)	419, 703, 1437
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	4, 727, 1229, 1430
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	4 cut(s)	37, 225, 307, 652
Lsp1109I	GCAGC	5 cut(s)	490, 891, 1072, 1075, 1106
LweI	GCATC	2 cut(s)	373, 697
MaeI	CTAG	4 cut(s)	51, 296, 660, 876
MaeIII	GTNAC	4 cut(s)	265, 277, 887, 1418
MalI	GATC	4 cut(s)	6, 729, 1231, 1432
MboI	GATC	4 cut(s)	4, 727, 1229, 1430
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	873
MluCI	AATT	6 cut(s)	65, 229, 637, 1149, 1289, 1326
MlyI	GAGTC	2 cut(s)	233, 757
MroXI	GAANNNNTTC	2 cut(s)	362, 669
MseI	TTAA	3 cut(s)	147, 204, 474
MslI	CAYNNNNRTG	1 cut(s)	744
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	5 cut(s)	315, 355, 1159, 1238, 1306
MunI	CAATTG	1 cut(s)	65
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	4 cut(s)	355, 1159, 1238, 1306
MwoI	GCNNNNNNNGC	6 cut(s)	81, 207, 216, 225, 631, 1413
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	4, 727, 1229, 1430
NlaIII	CATG	3 cut(s)	419, 703, 1437
NlaIV	GGNNCC	3 cut(s)	60, 654, 794
NmeAIII	GCCGAG	1 cut(s)	1309
NmuCI	GTSAC	2 cut(s)	265, 277
PagI	TCATGA	1 cut(s)	1433
PceI	AGGCCT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	923
PdmI	GAANNNNTTC	2 cut(s)	362, 669
PfeI	GAWTC	2 cut(s)	419, 956
PfoI	TCCNGGA	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	480, 881, 1087, 1090, 1121
PleI	GAGTC	2 cut(s)	233, 757
PpsI	GAGTC	2 cut(s)	233, 757
PshBI	ATTAAT	1 cut(s)	204
Psp6I	CCWGG	4 cut(s)	353, 1157, 1236, 1304
PspFI	CCCAGC	1 cut(s)	685
PspGI	CCWGG	4 cut(s)	353, 1157, 1236, 1304
PspN4I	GGNNCC	3 cut(s)	60, 654, 794
PspPI	GGNCC	2 cut(s)	209, 854
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	744
SalI	GTCGAC	1 cut(s)	967
SapI	GCTCTTC	1 cut(s)	353
SaqAI	TTAA	3 cut(s)	147, 204, 474
SatI	GCNGC	5 cut(s)	479, 880, 1086, 1089, 1120
Sau3AI	GATC	4 cut(s)	4, 727, 1229, 1430
Sau96I	GGNCC	2 cut(s)	209, 854
SchI	GAGTC	2 cut(s)	233, 757
ScrFI	CCNGG	5 cut(s)	315, 355, 1159, 1238, 1306
SduI	GDGCHC	1 cut(s)	873
SfaNI	GCATC	2 cut(s)	373, 697
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	4 cut(s)	508, 979, 1015, 1205
SmoI	CTYRAG	4 cut(s)	508, 979, 1015, 1205
Sse9I	AATT	6 cut(s)	65, 229, 637, 1149, 1289, 1326
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	1 cut(s)	1401
SspMI	CTAG	4 cut(s)	51, 296, 660, 876
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	5 cut(s)	313, 353, 1157, 1236, 1304
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	2 cut(s)	407, 548
TaqI	TCGA	2 cut(s)	788, 968
TasI	AATT	6 cut(s)	65, 229, 637, 1149, 1289, 1326
TfiI	GAWTC	2 cut(s)	419, 956
Tru1I	TTAA	3 cut(s)	147, 204, 474
Tru9I	TTAA	3 cut(s)	147, 204, 474
TscAI	CASTG	4 cut(s)	192, 343, 728, 1324
TseFI	GTSAC	2 cut(s)	265, 277
TseI	GCWGC	5 cut(s)	478, 879, 1085, 1088, 1119
Tsp45I	GTSAC	2 cut(s)	265, 277
TspDTI	ATGAA	1 cut(s)	716
TspRI	CASTG	4 cut(s)	192, 343, 728, 1324
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	3 cut(s)	637, 1149, 1326
XbaI	TCTAGA	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	968, 1041
XmnI	GAANNNNTTC	2 cut(s)	362, 669
XspI	CTAG	4 cut(s)	51, 296, 660, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.