RLG00000020282

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009998
Physical Location & Seq
Forward (+)
63222425 .. 63225494
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020282

Sequence Viewer

Length: 1434 bp
ATGGATCTCACAAGCCCCAGATGTTTCCAAGCTCCAAACTTTATCTCATCTAGTGTGGAACCACCATTGGAGAGCAACACAAGCTTCTATGGGAAAAGCAAGAGCAACCCATTTGCAGACACCTTCCCTGACCCACTTTGCAAGCTTAATCTCAAAGAGACAGCTGAGTTTGTCAAGTCATTCCCACTACCACCACCAAGCAATGGCCCAGAAAGCAATAGAAGCAATTTTCTTGATTCCTCAGCTCAGAAAAGAGAGGGAGTAACCTCTGTTGTCACACACAAGAAAGTTCTAGAAGCTCCTCCCACACCAGGAAGGCCTGTGTTCAGCTTCAGTGTAGGGAATCTTTCCAGAAAGAGCTTCCCTTCAAAGTGGGATGATGCTGAGAAATGGCTCATAAGTAGTTCTTGCCATGATTCTCCTGCTCACCACACCACAAAGGTTAGTAATGCCAAGCAATGTGACAACTTTAAGCAGCAACAAATGGAGGTGTCAAAAGCAGTCTCAAGCTTTCAGAGGTCTGCATCTTTGAACAATCATAATAGTTCTGCCAAAGCTTTCAAAGGGGGCTTAGGCTCTATGGATGTGCTTCCAAAAGATAAGTTTGTGGATGACATAGAACCAATTCTGCCCAATTTCAAGTATTTGGAGCCAACTAAAGAAGGGTTTCTGTTCAAAAACTCAGCCTGTGAAAACATGAAAGATGCAGGCACAGACCAGTGTCATCAGATAGAACATCGGGATGTTGGGACAGAGATGACTCCTCTTGGCAGTTCAAGAACTTCGAGGTGTCACACACCGTTCAAGTGCCCATCACCAGCGCGCCATAACACTCCTGAAAATAGATCAGGGCCATTGGCCTTGGGGCACTCTAGCAGCTCCAATAACACCATTGACATTACTCAGTTGCAGGAATGCCATTTAGCTAAGCTTCAACTTGGGACACAATATGATTCAATTGCATCAACTTGGAACTCAAGGGAAGAGGAGGAAATGGAAATATCAAAGAGCTTGAGGCATTTTGACACAGGCAATGTATATGCAGGCAATGGATACCGAGAAGGTATTTCTGAACCAAGAGCTGCTGCTTGGGAAGAGGAAGAAAATAACAAATGCTGCCTTAGGTATCAAAGAGAAGAAGCAAAAATTCAAGCCTGGGTCAATCTCCAAAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTCGAGGTGAAGATACAGAAGATGAGATCAAACCTGGAGGAGAAGTTGATGAAGAAGATGGCAGTTGTGCATAGAAAAGCCGAGGAATTCAGAGCAGAAGCCAGGCAACAACACACTGAACAAATTCACAAGGCCACCAACCAAGCACAGAAGATGATTAGTCGGCACAACCCTCATTTCTCTGGCCACATTTCTTGCGGTTGCTTCCCTTGCAGTAACCACAACCGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

478

Amino Acids

53.46

Weight (kDa)

8.54

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 358 - 456 1.8e-26 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccII CGCG 1 cut(s) 823
AciI CCGC 1 cut(s) 1398
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 1384
AcsI RAATTY 3 cut(s) 1146, 1286, 1323
AcuI CTGAAG 1 cut(s) 316
AfiI CCNNNNNNNGG 2 cut(s) 203, 311
AjnI CCWGG 4 cut(s) 310, 1154, 1233, 1301
Alw26I GTCTC 2 cut(s) 152, 508
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 1202
AoxI GGCC 6 cut(s) 205, 317, 851, 858, 1332, 1384
ApeKI GCWGC 5 cut(s) 475, 876, 1082, 1085, 1116
ApoI RAATTY 3 cut(s) 1146, 1286, 1323
Asp700I GAANNNNTTC 3 cut(s) 624, 666, 1323
AspLEI GCGC 2 cut(s) 823, 825
AspS9I GGNCC 2 cut(s) 206, 851
AsuHPI GGTGA 3 cut(s) 419, 807, 1219
AvaI CYCGRG 1 cut(s) 1202
AxyI CCTNAGG 1 cut(s) 1121
BaeGI GKGCMC 2 cut(s) 812, 870
BalI TGGCCA 1 cut(s) 1386
BbvCI CCTCAGC 1 cut(s) 241
BbvI GCAGC 5 cut(s) 487, 888, 1069, 1072, 1103
BccI CCATC 2 cut(s) 820, 1252
BciT130I CCWGG 4 cut(s) 312, 1156, 1235, 1303
BciVI GTATCC 1 cut(s) 1046
BcoDI GTCTC 2 cut(s) 152, 508
BfaI CTAG 3 cut(s) 51, 293, 873
BfuI GTATCC 1 cut(s) 1046
BisI GCNGC 5 cut(s) 476, 877, 1083, 1086, 1117
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 5 cut(s) 477, 878, 1084, 1087, 1118
Bme1390I CCNGG 4 cut(s) 312, 1156, 1235, 1303
BmeT110I CYCGRG 1 cut(s) 1202
BmgT120I GGNCC 2 cut(s) 206, 851
BmiI GGNNCC 2 cut(s) 60, 651
BmrFI CCNGG 4 cut(s) 312, 1156, 1235, 1303
BmsI GCATC 4 cut(s) 370, 533, 694, 971
BoxI GACNNNNGTC 1 cut(s) 720
BpmI CTGGAG 1 cut(s) 1256
Bpu10I CCTNAGC 2 cut(s) 241, 571
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 3 cut(s) 490, 961, 1033
BsaJI CCNNGG 3 cut(s) 861, 1155, 1281
BsaXI ACNNNNNCTCC 2 cut(s) 1229, 1259
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 311
Bse1I ACTGG 1 cut(s) 718
Bse21I CCTNAGG 1 cut(s) 1121
Bse3DI GCAATG 4 cut(s) 208, 464, 1039, 1054
BseBI CCWGG 4 cut(s) 312, 1156, 1235, 1303
BseDI CCNNGG 3 cut(s) 861, 1155, 1281
BseGI GGATG 4 cut(s) 382, 589, 616, 748
BseLI CCNNNNNNNGG 2 cut(s) 203, 311
BseMI GCAATG 4 cut(s) 208, 464, 1039, 1054
BseMII CTCAG 7 cut(s) 156, 255, 260, 375, 696, 917, 1202
BseNI ACTGG 1 cut(s) 718
BsePI GCGCGC 1 cut(s) 821
BseRI GAGGAG 4 cut(s) 291, 753, 1001, 1253
BseSI GKGCMC 2 cut(s) 812, 870
BseXI GCAGC 5 cut(s) 487, 888, 1069, 1072, 1103
Bsh1236I CGCG 1 cut(s) 823
BshFI GGCC 6 cut(s) 207, 319, 853, 860, 1334, 1386
BsiHKCI CYCGRG 1 cut(s) 1202
BslFI GGGAC 2 cut(s) 763, 955
BslI CCNNNNNNNGG 2 cut(s) 203, 311
BsmAI GTCTC 2 cut(s) 152, 508
BsmFI GGGAC 2 cut(s) 763, 955
BsmI GAATGC 1 cut(s) 920
BsnI GGCC 6 cut(s) 207, 319, 853, 860, 1334, 1386
BsoBI CYCGRG 1 cut(s) 1202
Bsp1286I GDGCHC 2 cut(s) 812, 870
Bsp143I GATC 4 cut(s) 4, 845, 1226, 1427
Bsp1720I GCTNAGC 1 cut(s) 927
BspACI CCGC 1 cut(s) 1398
BspANI GGCC 6 cut(s) 207, 319, 853, 860, 1334, 1386
BspCNI CTCAG 7 cut(s) 157, 254, 259, 376, 695, 916, 1201
BspFNI CGCG 1 cut(s) 823
BspHI TCATGA 1 cut(s) 1430
BspLI GGNNCC 2 cut(s) 60, 651
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 4 cut(s) 208, 464, 1039, 1054
BsrI ACTGG 1 cut(s) 718
BssECI CCNNGG 3 cut(s) 861, 1155, 1281
BssHII GCGCGC 1 cut(s) 821
BssMI GATC 4 cut(s) 4, 845, 1226, 1427
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 4 cut(s) 312, 1156, 1235, 1303
Bst4CI ACNGT 1 cut(s) 801
Bst6I CTCTTC 2 cut(s) 978, 1089
BstC8I GCNNGC 4 cut(s) 143, 709, 823, 1045
BstF5I GGATG 4 cut(s) 382, 589, 616, 748
BstFNI CGCG 1 cut(s) 823
BstHHI GCGC 2 cut(s) 823, 825
BstKTI GATC 4 cut(s) 7, 848, 1229, 1430
BstMAI GTCTC 2 cut(s) 152, 508
BstMBI GATC 4 cut(s) 4, 845, 1226, 1427
BstMWI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1410
BstNI CCWGG 4 cut(s) 312, 1156, 1235, 1303
BstPAI GACNNNNGTC 1 cut(s) 720
BstSCI CCNGG 4 cut(s) 310, 1154, 1233, 1301
BstSLI GKGCMC 2 cut(s) 812, 870
BstUI CGCG 1 cut(s) 823
BstV1I GCAGC 5 cut(s) 487, 888, 1069, 1072, 1103
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 1121
BsuI GTATCC 1 cut(s) 1046
BsuRI GGCC 6 cut(s) 207, 319, 853, 860, 1334, 1386
BtsCI GGATG 4 cut(s) 382, 589, 616, 748
BtsIMutI CAGTG 3 cut(s) 340, 725, 1314
Cac8I GCNNGC 4 cut(s) 143, 709, 823, 1045
CciI TCATGA 1 cut(s) 1430
CfoI GCGC 2 cut(s) 823, 825
Cfr13I GGNCC 2 cut(s) 206, 851
CspCI CAANNNNNGTGG 2 cut(s) 1376, 1411
CviAII CATG 3 cut(s) 413, 697, 1431
DpnI GATC 4 cut(s) 6, 847, 1228, 1429
DpnII GATC 4 cut(s) 4, 845, 1226, 1427
EaeI YGGCCR 1 cut(s) 1384
Eam1104I CTCTTC 2 cut(s) 978, 1089
EarI CTCTTC 2 cut(s) 978, 1089
Eco130I CCWWGG 1 cut(s) 861
Eco147I AGGCCT 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 316
Eco81I CCTNAGG 1 cut(s) 1121
Eco88I CYCGRG 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 1286
EcoRII CCWGG 4 cut(s) 310, 1154, 1233, 1301
EcoT14I CCWWGG 1 cut(s) 861
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 3 cut(s) 416, 700, 1434
FalI AAGNNNNNCTT 2 cut(s) 391, 423
FaqI GGGAC 2 cut(s) 763, 955
FatI CATG 3 cut(s) 412, 696, 1430
Fnu4HI GCNGC 5 cut(s) 476, 877, 1083, 1086, 1117
FokI GGATG 4 cut(s) 389, 596, 623, 755
Fsp4HI GCNGC 5 cut(s) 476, 877, 1083, 1086, 1117
FspBI CTAG 3 cut(s) 51, 293, 873
GlaI GCGC 2 cut(s) 822, 824
GluI GCNGC 5 cut(s) 476, 877, 1083, 1086, 1117
GsuI CTGGAG 1 cut(s) 1256
HaeIII GGCC 6 cut(s) 207, 319, 853, 860, 1334, 1386
HhaI GCGC 2 cut(s) 823, 825
Hin1II CATG 3 cut(s) 416, 700, 1434
Hin6I GCGC 2 cut(s) 821, 823
HinP1I GCGC 2 cut(s) 821, 823
HindIII AAGCTT 5 cut(s) 82, 143, 508, 555, 929
HinfI GANTC 5 cut(s) 236, 343, 416, 760, 953
HphI GGTGA 3 cut(s) 419, 807, 1219
Hpy188I TCNGA 5 cut(s) 249, 516, 729, 1072, 1292
Hpy188III TCNNGA 8 cut(s) 233, 293, 351, 740, 777, 836, 1194, 1431
HpyAV CCTTC 5 cut(s) 133, 309, 375, 656, 1055
HpyCH4III ACNGT 1 cut(s) 801
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1410
Hsp92II CATG 3 cut(s) 416, 700, 1434
HspAI GCGC 2 cut(s) 821, 823
Kzo9I GATC 4 cut(s) 4, 845, 1226, 1427
LmnI GCTCC 4 cut(s) 37, 304, 649, 884
Lsp1109I GCAGC 5 cut(s) 487, 888, 1069, 1072, 1103
LweI GCATC 4 cut(s) 370, 533, 694, 971
MaeI CTAG 3 cut(s) 51, 293, 873
MaeIII GTNAC 5 cut(s) 262, 274, 461, 791, 1415
MalI GATC 4 cut(s) 6, 847, 1228, 1429
MboI GATC 4 cut(s) 4, 845, 1226, 1427
MboII GAAGA 9 cut(s) 995, 1106, 1112, 1148, 1222, 1231, 1264, 1267, 1363
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 812, 870
MlsI TGGCCA 1 cut(s) 1386
MluCI AATT 7 cut(s) 226, 624, 634, 957, 1146, 1286, 1323
MluNI TGGCCA 1 cut(s) 1386
MlyI GAGTC 1 cut(s) 754
Mox20I TGGCCA 1 cut(s) 1386
MroXI GAANNNNTTC 3 cut(s) 624, 666, 1323
MscI TGGCCA 1 cut(s) 1386
MseI TTAA 2 cut(s) 147, 471
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 1386
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 4 cut(s) 312, 1156, 1235, 1303
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 1 cut(s) 920
MvaI CCWGG 4 cut(s) 312, 1156, 1235, 1303
MvnI CGCG 1 cut(s) 823
MwoI GCNNNNNNNGC 4 cut(s) 81, 213, 222, 1410
NdeII GATC 4 cut(s) 4, 845, 1226, 1427
NlaIII CATG 3 cut(s) 416, 700, 1434
NlaIV GGNNCC 2 cut(s) 60, 651
NmeAIII GCCGAG 1 cut(s) 1306
NmuCI GTSAC 3 cut(s) 274, 461, 791
PaeR7I CTCGAG 1 cut(s) 1202
PagI TCATGA 1 cut(s) 1430
PauI GCGCGC 1 cut(s) 821
PceI AGGCCT 1 cut(s) 319
PctI GAATGC 1 cut(s) 920
PdmI GAANNNNTTC 3 cut(s) 624, 666, 1323
PfeI GAWTC 4 cut(s) 236, 343, 416, 953
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 5 cut(s) 477, 878, 1084, 1087, 1118
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
PshAI GACNNNNGTC 1 cut(s) 720
Psp6I CCWGG 4 cut(s) 310, 1154, 1233, 1301
PspGI CCWGG 4 cut(s) 310, 1154, 1233, 1301
PspN4I GGNNCC 2 cut(s) 60, 651
PspPI GGNCC 2 cut(s) 206, 851
PspXI VCTCGAGB 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 821
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 2 cut(s) 147, 471
SatI GCNGC 5 cut(s) 476, 877, 1083, 1086, 1117
Sau3AI GATC 4 cut(s) 4, 845, 1226, 1427
Sau96I GGNCC 2 cut(s) 206, 851
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 4 cut(s) 312, 1156, 1235, 1303
SduI GDGCHC 2 cut(s) 812, 870
SfaNI GCATC 4 cut(s) 370, 533, 694, 971
Sfr274I CTCGAG 1 cut(s) 1202
SlaI CTCGAG 1 cut(s) 1202
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 4 cut(s) 505, 976, 1012, 1202
SmoI CTYRAG 4 cut(s) 505, 976, 1012, 1202
Sse9I AATT 7 cut(s) 226, 624, 634, 957, 1146, 1286, 1323
SseBI AGGCCT 1 cut(s) 319
SsiI CCGC 1 cut(s) 1398
SspMI CTAG 3 cut(s) 51, 293, 873
StuI AGGCCT 1 cut(s) 319
StyD4I CCNGG 4 cut(s) 310, 1154, 1233, 1301
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 1 cut(s) 801
TaqI TCGA 2 cut(s) 785, 1203
TasI AATT 7 cut(s) 226, 624, 634, 957, 1146, 1286, 1323
TfiI GAWTC 4 cut(s) 236, 343, 416, 953
Tru1I TTAA 2 cut(s) 147, 471
Tru9I TTAA 2 cut(s) 147, 471
TscAI CASTG 3 cut(s) 340, 725, 1321
TseFI GTSAC 3 cut(s) 274, 461, 791
TseI GCWGC 5 cut(s) 475, 876, 1082, 1085, 1116
Tsp45I GTSAC 3 cut(s) 274, 461, 791
TspDTI ATGAA 2 cut(s) 713, 1265
TspRI CASTG 3 cut(s) 340, 725, 1321
Van91I CCANNNNNTGG 1 cut(s) 203
XapI RAATTY 3 cut(s) 1146, 1286, 1323
XbaI TCTAGA 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 1202
XmnI GAANNNNTTC 3 cut(s) 624, 666, 1323
XspI CTAG 3 cut(s) 51, 293, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.