Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009998

Physical Location & Seq

Genomic Coordinates Reverse (-)

2319890 .. 2323534

Gene Structure 3645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G031200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGATCTCACAAGCCCCAGATGCTTTCAAGCTCCATCTTTTATCTCATGTAGTGGGGAACCGCCATTAGAGGGCAGTACAAGCTTCTACGGGAAAAGTAAAACCAACCCATATGCAGACACCTTCCCTGACCCTCTGTGCAAGCTTAATCTCAAAGAGACCTCTGAGTTTGTCAAGTCATTCCCAGTACCAAGCAATGCCAGCTCAGAAGGCAACAGAGGTTTTCTTGACACTTCAGCTCAGAGGAGGGAGGGAATGAGCTCTGTCACACAGAGGAGATTGGAAGCTCCTCCTACACCTGGAAGACCTGTTTTCAGCTTCAGTGTTGGGAATTTTGCAAGAAAGAGCTTTCCTTCAAAATGGGATGATGCAGAGAAGTGGCTCATCAGTACCTCTTGCCATGACTCTCCTGCTCACACCATAAAGCCATCAGCAGACTCCACTAAGATTGTTAATGCCAACCAAGGTGACAACTTTAAGCAACAAATGGAGGTGTTTGCTGAAAAAACAAGGGTCGCAGAGGAAAAAGTGTCAAAGACAGTCTCAAGCTTTCAACGCTGTGCCTCTTTGAACAATCATAACTCTGGCAAAGCTTTCAATGGGGTCTCAACCTCAACTGATGTACTTCTAAAAGATAAGTTTGTGGACGATATAGAACCAGTTTTGCCCAATTCCAGGTACTTAGAGCCAACCAAAGAAGGCTTTCTATTCAAAAACTCAGCTTGTGAAACCATGAAAGATGCAGGCACAGAAGAGGTTCATCATCTACAACATCGAGATGTTGGGACAGAGATGACGCCTCTTGGCAGTTCAACAACTTCAAGGTGCCACACACCATTCAAGTGCTCGTCGCCCGCGCGCCATAATACGCCTGCAAATCGGTCAGGGCCATTGGCTTTGGGGTACTCTAGCAGCACTAATAACACCATTGACATTGCCCAGTTGCAGGAGTGCCTTGGGACACAATATGATTCAACTGCATCGAATTGGAACTCAAGGGAAGAGGAGGAAGTGGAAATATCAAAGAGCTTGAGACATTTCGAAACAAGCCATCCATGCCGAGAAAGTATTTCTGAATCTAGAGCTGCTGCCTGGGAAGAGGATGAAAACAACAAATGCTGCCTTAGGTATCAGAGAGAAGAAGCCAAAATCCAAGCCTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTTGAGGTGAAAATACAGAAGATGAGATCAAACCTGGAGGATAAGTTGATGAAGAGGATGGCAATTGTGCATAGAAAAGCTGAGGAATGGAGAGCAACAGCAAGGCAGCAACACTCTGAACAAATTAACAAGGCCACAAACAATGCACAGAAGATGATAAATAGGCATAACCCACATTTTTCTGGCCACATTTCTTGCGGCTGCTTCCCTTGCAATACCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C

Protein Analysis

476

Amino Acids

53.16

Weight (kDa)

8.11

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53860 AT1G53860
fragaria_vesca	FvH4_6g35790 FvH4_6g35790 FvH4_6g35790
malus_domestica	MD09G1173100.v1.1 MD17G1154200.v1.1
prunus_persica	Prupe.3G031200_v2.0.a1 Prupe.3G031200_v2.0.a1
pyrus_communis	pycom09g09050 pycom17g14690
rosa_chinensis	RchiOBHm_Chr2g0147831
rosa_laevigata	RLG00000020282
rosa_multiflora	Rmu_sc0000308.1_g000050
rosa_roxburghii	Rroxscaffold_2G00099290
rosa_rugosa	Rorug02G0402200
rosa_samantha	Rh2AG459200 Rh2BG472500 Rh2CG446600 Rh2DG481500
rosa_wichuraiana	Rw2G037560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	825
AccII	CGCG	2 cut(s)	857, 859
AciI	CCGC	3 cut(s)	62, 855, 1401
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	1387
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	219, 304
AcyI	GRCGYC	1 cut(s)	797
AfaI	GTAC	6 cut(s)	79, 189, 391, 624, 680, 905
AfiI	CCNNNNNNNGG	5 cut(s)	71, 299, 675, 946, 1159
AjnI	CCWGG	5 cut(s)	298, 674, 1091, 1157, 1236
Alw21I	GWGCWC	2 cut(s)	263, 848
Alw26I	GTCTC	4 cut(s)	152, 547, 610, 1027
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	887, 1335, 1387
ApeKI	GCWGC	6 cut(s)	912, 1085, 1088, 1119, 1309, 1404
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	2 cut(s)	702, 756
AspLEI	GCGC	2 cut(s)	859, 861
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	2 cut(s)	479, 1222
AsuII	TTCGAA	1 cut(s)	1041
AxyI	CCTNAGG	1 cut(s)	1124
BalI	TGGCCA	1 cut(s)	1389
BanI	GGYRCC	1 cut(s)	825
BanII	GRGCYC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	310
Bbv12I	GWGCWC	2 cut(s)	263, 848
BbvCI	CCTCAGC	1 cut(s)	1284
BbvI	GCAGC	6 cut(s)	924, 1072, 1075, 1106, 1321, 1391
BccI	CCATC	4 cut(s)	43, 436, 1059, 1255
BciT130I	CCWGG	5 cut(s)	300, 676, 1093, 1159, 1238
BcoDI	GTCTC	4 cut(s)	152, 547, 610, 1027
BfaI	CTAG	2 cut(s)	909, 1080
BisI	GCNGC	7 cut(s)	913, 1086, 1089, 1120, 1310, 1402, 1405
BlsI	GCNGC	7 cut(s)	914, 1087, 1090, 1121, 1311, 1403, 1406
Bme1390I	CCNGG	5 cut(s)	300, 676, 1093, 1159, 1238
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	2 cut(s)	60, 827
BmrFI	CCNGG	5 cut(s)	300, 676, 1093, 1159, 1238
BmrI	ACTGGG	2 cut(s)	179, 934
BmsI	GCATC	4 cut(s)	11, 358, 730, 989
BmuI	ACTGGG	2 cut(s)	179, 934
BpiI	GAAGAC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	1259
Bpu10I	CCTNAGC	1 cut(s)	1284
Bpu14I	TTCGAA	1 cut(s)	1041
BpuEI	CTTGAG	4 cut(s)	529, 979, 1051, 1226
BsaHI	GRCGYC	1 cut(s)	797
BsaI	GGTCTC	2 cut(s)	152, 610
BsaJI	CCNNGG	4 cut(s)	463, 955, 1092, 1158
BsaXI	ACNNNNNCTCC	2 cut(s)	1232, 1262
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 299, 675, 946, 1159
Bse1I	ACTGG	3 cut(s)	185, 659, 940
Bse21I	CCTNAGG	1 cut(s)	1124
Bse3DI	GCAATG	2 cut(s)	202, 933
BseBI	CCWGG	5 cut(s)	300, 676, 1093, 1159, 1238
BseDI	CCNNGG	4 cut(s)	463, 955, 1092, 1158
BseGI	GGATG	4 cut(s)	370, 1051, 1108, 1266
BseLI	CCNNNNNNNGG	5 cut(s)	71, 299, 675, 946, 1159
BseMI	GCAATG	2 cut(s)	202, 933
BseMII	CTCAG	6 cut(s)	156, 219, 254, 732, 1205, 1275
BseNI	ACTGG	3 cut(s)	185, 659, 940
BsePI	GCGCGC	1 cut(s)	857
BseRI	GAGGAG	4 cut(s)	259, 279, 289, 1019
BseXI	GCAGC	6 cut(s)	924, 1072, 1075, 1106, 1321, 1391
Bsh1236I	CGCG	2 cut(s)	857, 859
BshFI	GGCC	3 cut(s)	889, 1337, 1389
BshNI	GGYRCC	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	263, 848
BslFI	GGGAC	2 cut(s)	799, 973
BslI	CCNNNNNNNGG	5 cut(s)	71, 299, 675, 946, 1159
BsmAI	GTCTC	4 cut(s)	152, 547, 610, 1027
BsmFI	GGGAC	2 cut(s)	799, 973
BsnI	GGCC	3 cut(s)	889, 1337, 1389
Bso31I	GGTCTC	2 cut(s)	152, 610
Bsp119I	TTCGAA	1 cut(s)	1041
Bsp1286I	GDGCHC	2 cut(s)	263, 848
Bsp143I	GATC	2 cut(s)	4, 1229
BspACI	CCGC	3 cut(s)	62, 855, 1401
BspANI	GGCC	3 cut(s)	889, 1337, 1389
BspCNI	CTCAG	6 cut(s)	157, 218, 253, 731, 1204, 1276
BspFNI	CGCG	2 cut(s)	857, 859
BspLI	GGNNCC	2 cut(s)	60, 827
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	1041
BspT107I	GGYRCC	1 cut(s)	825
BspTNI	GGTCTC	2 cut(s)	152, 610
BsrDI	GCAATG	2 cut(s)	202, 933
BsrI	ACTGG	3 cut(s)	185, 659, 940
BssECI	CCNNGG	4 cut(s)	463, 955, 1092, 1158
BssHII	GCGCGC	1 cut(s)	857
BssMI	GATC	2 cut(s)	4, 1229
BssNI	GRCGYC	1 cut(s)	797
BssT1I	CCWWGG	2 cut(s)	463, 955
Bst2UI	CCWGG	5 cut(s)	300, 676, 1093, 1159, 1238
Bst4CI	ACNGT	1 cut(s)	541
Bst6I	CTCTTC	4 cut(s)	747, 996, 1092, 1250
BstACI	GRCGYC	1 cut(s)	797
BstBI	TTCGAA	1 cut(s)	1041
BstC8I	GCNNGC	6 cut(s)	143, 202, 745, 855, 859, 873
BstDEI	CTNAG	9 cut(s)	165, 205, 240, 444, 682, 718, 1124, 1191, 1284
BstF5I	GGATG	4 cut(s)	370, 1051, 1108, 1266
BstFNI	CGCG	2 cut(s)	857, 859
BstHHI	GCGC	2 cut(s)	859, 861
BstKTI	GATC	2 cut(s)	7, 1232
BstMAI	GTCTC	4 cut(s)	152, 547, 610, 1027
BstMBI	GATC	2 cut(s)	4, 1229
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 81, 201, 210, 555, 1056, 1413
BstNI	CCWGG	5 cut(s)	300, 676, 1093, 1159, 1238
BstSCI	CCNGG	5 cut(s)	298, 674, 1091, 1157, 1236
BstUI	CGCG	2 cut(s)	857, 859
BstV1I	GCAGC	6 cut(s)	924, 1072, 1075, 1106, 1321, 1391
BstV2I	GAAGAC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	1124
BsuRI	GGCC	3 cut(s)	889, 1337, 1389
BtsCI	GGATG	4 cut(s)	370, 1051, 1108, 1266
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	6 cut(s)	143, 202, 745, 855, 859, 873
CfoI	GCGC	2 cut(s)	859, 861
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	6 cut(s)	78, 188, 390, 623, 679, 904
CspCI	CAANNNNNGTGG	4 cut(s)	430, 465, 1379, 1414
CviAII	CATG	4 cut(s)	48, 401, 733, 1056
CviQI	GTAC	6 cut(s)	78, 188, 390, 623, 679, 904
DdeI	CTNAG	9 cut(s)	165, 205, 240, 444, 682, 718, 1124, 1191, 1284
DpnI	GATC	2 cut(s)	6, 1231
DpnII	GATC	2 cut(s)	4, 1229
EaeI	YGGCCR	1 cut(s)	1387
Eam1104I	CTCTTC	4 cut(s)	747, 996, 1092, 1250
EarI	CTCTTC	4 cut(s)	747, 996, 1092, 1250
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	2 cut(s)	463, 955
Eco24I	GRGCYC	1 cut(s)	263
Eco31I	GGTCTC	2 cut(s)	152, 610
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	2 cut(s)	219, 304
Eco81I	CCTNAGG	1 cut(s)	1124
EcoICRI	GAGCTC	1 cut(s)	261
EcoRII	CCWGG	5 cut(s)	298, 674, 1091, 1157, 1236
EcoT14I	CCWWGG	2 cut(s)	463, 955
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	2 cut(s)	463, 955
FaeI	CATG	4 cut(s)	51, 404, 736, 1059
FaqI	GGGAC	2 cut(s)	799, 973
FatI	CATG	4 cut(s)	47, 400, 732, 1055
FauI	CCCGC	1 cut(s)	862
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	7 cut(s)	913, 1086, 1089, 1120, 1310, 1402, 1405
FokI	GGATG	4 cut(s)	377, 1038, 1115, 1273
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	7 cut(s)	913, 1086, 1089, 1120, 1310, 1402, 1405
FspBI	CTAG	2 cut(s)	909, 1080
GlaI	GCGC	2 cut(s)	858, 860
GluI	GCNGC	7 cut(s)	913, 1086, 1089, 1120, 1310, 1402, 1405
GsuI	CTGGAG	1 cut(s)	1259
HaeIII	GGCC	3 cut(s)	889, 1337, 1389
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	2 cut(s)	859, 861
Hin1I	GRCGYC	1 cut(s)	797
Hin1II	CATG	4 cut(s)	51, 404, 736, 1059
Hin6I	GCGC	2 cut(s)	857, 859
HinP1I	GCGC	2 cut(s)	857, 859
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HindIII	AAGCTT	5 cut(s)	82, 143, 547, 591, 1202
HinfI	GANTC	4 cut(s)	404, 437, 971, 1076
HphI	GGTGA	2 cut(s)	479, 1222
Hpy166II	GTNNAC	2 cut(s)	646, 1165
Hpy188I	TCNGA	6 cut(s)	166, 208, 243, 1075, 1134, 1321
Hpy188III	TCNNGA	4 cut(s)	227, 776, 1080, 1197
Hpy8I	GTNNAC	2 cut(s)	646, 1165
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	4 cut(s)	133, 203, 363, 692
HpyCH4III	ACNGT	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 81, 201, 210, 555, 1056, 1413
HpyF3I	CTNAG	9 cut(s)	165, 205, 240, 444, 682, 718, 1124, 1191, 1284
Hsp92I	GRCGYC	1 cut(s)	797
Hsp92II	CATG	4 cut(s)	51, 404, 736, 1059
HspAI	GCGC	2 cut(s)	857, 859
Kzo9I	GATC	2 cut(s)	4, 1229
LmnI	GCTCC	2 cut(s)	37, 292
Lsp1109I	GCAGC	6 cut(s)	924, 1072, 1075, 1106, 1321, 1391
LweI	GCATC	4 cut(s)	11, 358, 730, 989
MaeI	CTAG	2 cut(s)	909, 1080
MaeIII	GTNAC	2 cut(s)	265, 467
MalI	GATC	2 cut(s)	6, 1231
MboI	GATC	2 cut(s)	4, 1229
MboII	GAAGA	8 cut(s)	315, 764, 1013, 1109, 1151, 1234, 1267, 1366
MfeI	CAATTG	1 cut(s)	1266
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	263, 848
MlsI	TGGCCA	1 cut(s)	1389
MluCI	AATT	5 cut(s)	331, 670, 985, 1266, 1326
MluNI	TGGCCA	1 cut(s)	1389
MlyI	GAGTC	2 cut(s)	398, 431
Mox20I	TGGCCA	1 cut(s)	1389
MroXI	GAANNNNTTC	2 cut(s)	702, 756
MscI	TGGCCA	1 cut(s)	1389
MseI	TTAA	5 cut(s)	147, 453, 477, 1329, 1426
MslI	CAYNNNNRTG	2 cut(s)	777, 841
Msp20I	TGGCCA	1 cut(s)	1389
MspR9I	CCNGG	5 cut(s)	300, 676, 1093, 1159, 1238
MunI	CAATTG	1 cut(s)	1266
MvaI	CCWGG	5 cut(s)	300, 676, 1093, 1159, 1238
MvnI	CGCG	2 cut(s)	857, 859
MwoI	GCNNNNNNNGC	7 cut(s)	21, 81, 201, 210, 555, 1056, 1413
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	4, 1229
NlaIII	CATG	4 cut(s)	51, 404, 736, 1059
NlaIV	GGNNCC	2 cut(s)	60, 827
NmeAIII	GCCGAG	1 cut(s)	1085
NmuCI	GTSAC	2 cut(s)	265, 467
NspV	TTCGAA	1 cut(s)	1041
PauI	GCGCGC	1 cut(s)	857
PdmI	GAANNNNTTC	2 cut(s)	702, 756
PfeI	GAWTC	2 cut(s)	971, 1076
PkrI	GCNGC	7 cut(s)	914, 1087, 1090, 1121, 1311, 1403, 1406
PleI	GAGTC	2 cut(s)	398, 431
PpsI	GAGTC	2 cut(s)	398, 431
Psp124BI	GAGCTC	1 cut(s)	263
Psp6I	CCWGG	5 cut(s)	298, 674, 1091, 1157, 1236
PspGI	CCWGG	5 cut(s)	298, 674, 1091, 1157, 1236
PspN4I	GGNNCC	2 cut(s)	60, 827
PspPI	GGNCC	1 cut(s)	887
PsuI	RGATCY	1 cut(s)	4
PteI	GCGCGC	1 cut(s)	857
RsaI	GTAC	6 cut(s)	79, 189, 391, 624, 680, 905
RsaNI	GTAC	6 cut(s)	78, 188, 390, 623, 679, 904
RseI	CAYNNNNRTG	2 cut(s)	777, 841
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	147, 453, 477, 1329, 1426
SatI	GCNGC	7 cut(s)	913, 1086, 1089, 1120, 1310, 1402, 1405
Sau3AI	GATC	2 cut(s)	4, 1229
Sau96I	GGNCC	1 cut(s)	887
SchI	GAGTC	2 cut(s)	398, 431
ScrFI	CCNGG	5 cut(s)	300, 676, 1093, 1159, 1238
SduI	GDGCHC	2 cut(s)	263, 848
SfaNI	GCATC	4 cut(s)	11, 358, 730, 989
SfuI	TTCGAA	1 cut(s)	1041
SmiMI	CAYNNNNRTG	2 cut(s)	777, 841
SmlI	CTYRAG	4 cut(s)	544, 994, 1030, 1205
SmoI	CTYRAG	4 cut(s)	544, 994, 1030, 1205
Sse9I	AATT	5 cut(s)	331, 670, 985, 1266, 1326
SsiI	CCGC	3 cut(s)	62, 855, 1401
SspMI	CTAG	2 cut(s)	909, 1080
SstI	GAGCTC	1 cut(s)	263
StyD4I	CCNGG	5 cut(s)	298, 674, 1091, 1157, 1236
StyI	CCWWGG	2 cut(s)	463, 955
TaaI	ACNGT	1 cut(s)	541
TaqI	TCGA	3 cut(s)	775, 983, 1041
TaqII	GACCGA	1 cut(s)	870
TasI	AATT	5 cut(s)	331, 670, 985, 1266, 1326
TatI	WGTACW	2 cut(s)	77, 622
TauI	GCSGC	1 cut(s)	1404
TfiI	GAWTC	2 cut(s)	971, 1076
Tru1I	TTAA	5 cut(s)	147, 453, 477, 1329, 1426
Tru9I	TTAA	5 cut(s)	147, 453, 477, 1329, 1426
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	265, 467
TseI	GCWGC	6 cut(s)	912, 1085, 1088, 1119, 1309, 1404
Tsp45I	GTSAC	2 cut(s)	265, 467
TspDTI	ATGAA	4 cut(s)	749, 749, 1119, 1268
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	1079
XmnI	GAANNNNTTC	2 cut(s)	702, 756
XspI	CTAG	2 cut(s)	909, 1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.