Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Forward (+)

20241226 .. 20242641

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCGACGGAGTCGTCGTCCCCGAGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCTACTGGAGGTGCTCCTATACTCAAACAATCTAAGTTCAAGATTCCAGGGACTGATAAATTTGCCAAAGTGATTGACTTTCTTAGAAGACAGCTTCATTCTGATTCGTTGTTTGTCTATGTGAATAGTGCTTTCTCGCCAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGATTTGATGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

96

Amino Acids

10.57

Weight (kDa)

9.21

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	13 - 96	3.6e-35	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AasI	GACNNNNNNGTC	1 cut(s)	13
AccB7I	CCANNNNNTGG	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	27, 59, 151
AluI	AGCT	3 cut(s)	27, 59, 151
Alw21I	GWGCWC	2 cut(s)	29, 73
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	2 cut(s)	29, 73
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	104, 276
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	67, 258
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	104, 276
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	67, 258
BsiHKAI	GWGCWC	2 cut(s)	29, 73
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	2 cut(s)	4, 121
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	4, 121
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	29, 73
Bsp143I	GATC	1 cut(s)	220
Bsp19I	CCATGG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	67, 258
BssECI	CCNNGG	2 cut(s)	104, 276
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	105
BstDEI	CTNAG	3 cut(s)	53, 90, 140
BstDSI	CCRYGG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	110
CviAII	CATG	2 cut(s)	277, 282
CviJI	RGCY	4 cut(s)	27, 59, 151, 288
CviKI_1	RGCY	4 cut(s)	27, 59, 151, 288
DdeI	CTNAG	3 cut(s)	53, 90, 140
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	280, 285
FaiI	YATR	6 cut(s)	77, 177, 228, 267, 278, 283
FaqI	GGGAC	2 cut(s)	4, 121
FatI	CATG	2 cut(s)	276, 281
FriOI	GRGCYC	1 cut(s)	29
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	2 cut(s)	280, 285
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	4 cut(s)	11, 100, 161, 209
HpaI	GTTAAC	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	251, 262
Hpy188I	TCNGA	2 cut(s)	36, 160
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	251, 262
Hpy99I	CGWCG	2 cut(s)	10, 19
HpyF3I	CTNAG	3 cut(s)	53, 90, 140
Hsp92II	CATG	2 cut(s)	280, 285
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	48, 90, 117, 216, 239
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	29, 73
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	1 cut(s)	59
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	2 cut(s)	280, 285
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 20
PfeI	GAWTC	3 cut(s)	100, 161, 209
PflFI	GACNNNGTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	282
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PsiI	TTATAA	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	220
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	29, 73
SetI	ASST	4 cut(s)	29, 61, 70, 153
Sse9I	AATT	1 cut(s)	116
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	276
TasI	AATT	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	100, 161, 209
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TspDTI	ATGAA	3 cut(s)	38, 143, 222
TspGWI	ACGGA	1 cut(s)	23
Tth111I	GACNNNGTC	1 cut(s)	10
Van91I	CCANNNNNTGG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.