Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Reverse (-)

4613492 .. 4614857

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGACCGAATCTCCGAATTCTGTTCAGAAAATTGTTGTTCATCTGCGAGCTACTGGTGGTGCTCCGATACTGAAACAATCTAAATTCAAGGTTTCAGGGAGTGACAAGTTTGCTAACGTGATTGATTTTCTAAGACGGCAGCTTCACTCTGACTCATTGTTTGTTTATGTGAACAGCGCTTTCTCGCCAAACCCGGATGAATCAGTAATTGATCTATACAATAACTTTGGGTTTGATGGTAAACTGGTGGTGAACTATGCTTGTTCCATGGCATGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

94

Amino Acids

10.36

Weight (kDa)

7.89

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	11 - 56	6.1e-13	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AcsI	RAATTY	2 cut(s)	19, 86
AfeI	AGCGCT	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	2 cut(s)	53, 145
AluI	AGCT	2 cut(s)	53, 145
Alw21I	GWGCWC	1 cut(s)	67
Aor51HI	AGCGCT	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	2 cut(s)	19, 86
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	183
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
Bme1390I	CCNGG	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	270
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	2 cut(s)	61, 252
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	61, 252
BseXI	GCAGC	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	61, 252
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMCI	CGRYCG	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	271, 276
CviJI	RGCY	2 cut(s)	53, 145
CviKI_1	RGCY	2 cut(s)	53, 145
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	270
Eco47III	AGCGCT	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	274, 279
FaiI	YATR	5 cut(s)	171, 220, 261, 272, 277
FatI	CATG	2 cut(s)	270, 275
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	183
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	274, 279
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	11, 155, 203
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	175, 245, 256
Hpy188I	TCNGA	4 cut(s)	18, 30, 69, 154
Hpy8I	GTNNAC	3 cut(s)	175, 245, 256
HpyCH4IV	ACGT	1 cut(s)	120
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	274, 279
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	4 cut(s)	42, 84, 210, 233
Lsp1109I	GCAGC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	4 cut(s)	19, 33, 86, 210
MlyI	GAGTC	1 cut(s)	149
MseI	TTAA	1 cut(s)	283
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	197
NciI	CCSGG	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	274, 279
NmuCI	GTSAC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	11, 203
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	283
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	55, 96, 123, 147
Sse9I	AATT	4 cut(s)	19, 33, 86, 210
StyD4I	CCNGG	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	4 cut(s)	19, 33, 86, 210
TfiI	GAWTC	2 cut(s)	11, 203
Tru1I	TTAA	1 cut(s)	283
Tru9I	TTAA	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	32, 216
Van91I	CCANNNNNTGG	1 cut(s)	276
XapI	RAATTY	2 cut(s)	19, 86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.