Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Forward (+)

31812340 .. 31815450

Gene Structure 3111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3111 bp

ATGAAAAATCTGCTCAACTTCTTCCTCTTCTTGATTAGTATTTCTGTTCATATCATTTCTGCAGTTCACAGCCTATGTAATGAAGACCAGCAACTATCATTGCTTCATTTGAAGCAAACCGTCGTGTTCGATTCCTCTGCTTCTTCCAAGCTCAAATCATGGAATTCAAGCTCAGACTGTTGCTCTTGGCTTGGTGTAACTTGCAGTACTAATGGGCGTGTCATCGGTCTTGATCTCAGCACCGAATCTATCTCAAGTGGCGTTGACAATTCCAGCAGTCTCTTCGATCTTCAAGATCTTCAAAGCCTTAATTTGGCCTACAATTATGACTTCAGTGGCTCTCAGATCCCAACTGCCATTGGAAAGCTCACAAACTTGAGGTATCTAAACTTATCTCACAATTCCTACTTCGGGCAAATTCCCATTGAGATTTCATACTTGACAAGGTTGGTTATCTTTGATATTTCTGGCAATTTCTTCTCAACCGATCAGTTAAAACTTGAGAACCCAAATTTAACCAAGCTAGTTCAGAACCTCACAGAGCTAACAGAGTTGTATCTTGATGATGTCAATATATCAGCACAGGGCAGTGACTGGTCCCAAGCAATATCTTTACTGCCAAACATGAGGGTGCTGAGCTTGTATGCTTGTGATCTTTCAGGCCCTATTCATGACTCATTTGCTAAGCTTCATTCTCTATCTGTGATTATATTGGATCATAACCAAATCTCTGCTCCAGTTCCAGGATTCTTTGCCAATTTTTCAAACTTGACTTACTTAAGTCTTGTTGATTGTGGGTTGCAAGGAACATTTCCCAAAGAGATATTCCAGTCATCTACATTACAGAGTATTGACCTGACATTAAATCCACAGCTTCAAGGTTCCTTGCCAGAGTTACCCGAAAATGGATCTCTTCAGTCATTGGTTCTAAGCCAGACAAATTTTTCAGGGGTCCTGCCAAACTCTATAGGTAACCTCAATATGCTCTCTAGAATGGATCTTTCAGTTTGTAGCTTCAGTGGATCAATCCCAAAGTCAGTGGCAAACCTAACACAGTTGGTGAGTTTGTCTATGTCATCAAATAGGTTTGATGGCTCTATTGCTTCTATTCAGTGGAAAAACCTTGTTAATCTGAACTTTTTTATGTTGGACTCCAATCTACTTTCTGGGACTATTCCCTTGTCTCTCTTCTCTATTCCACTGCTGAGTAGACTAGTACTCTCTGACAATCAATTCTCTGGTCAAGTCCCTGAGTTTGCCAATATCTCTTCGTACTTACTGGAGACCCTTGATTTGAGTGGCAACAATTTGGTAGGATCAATACCCATATCTATATTTAATCTTCGAGGACTTTCTCAGCTTTATCTTTCTTCAAACAACTTGAGTGGCTTTCCTTTTAGTGGTATTCAACAGTCGAGAAATCTTTCATTTCTTGATCTTTCCCACAATAGCTTGTTGTTTAATGATGACAGTACCAATTCATCGCATTCCTCCTTACTTCAGGTTCAGGACTTGGTATTGGCTTCTAACAAGTTGAGAGCATTCCCAGATTTCTTGAGACACCAATTCCGATTAGCCTCTTTGGACCTTTCAGAAAACCAGATACAAGGGCAGATTCCCAATTGGATTTGGAGCCTCAGTTCTCTTAAAAAACTAAATCTCTCTTCAAACTCTTTGGTAACTCTAGAAGCTCCTTTGTTGAACTCTACTTCAACTGTGACTTCGCTCGACCTTCATTCAAACCAGCTTCAGGGGCAAATCCCAATTTTCCTACCATTTGCCAATTACTTGGATTACTCAAAAAATAACTTCACCTCTAGTATACCGACTGACATTGGTAATTATATCTCTTCCACTGCCTATCTCTCTCTGTCAAGCAGTAACTTGCATGGGATCATTCCAAGTTCAATATGCAATGCAAGCGGTCTGGTTCTTGACTTGTCCAATAATTCTCTGAGTGGCATCATTCCCGAATGCTTGACTCAACTTTCAGTACTTGATTTAGGGAGAAACAACCTGACTGGCACTATTCCTGATAAGTTTCTAGAACAGTGTAGCTTAAAAACTCTGGACCTCAGCAGAAATCAGATTGAAGGTCAGTTTCCAAGATCTCTAGTCAACTGCACACAGTTAGAGGTTTTAAGCCTCGGAAACAATCAGATAACAGATACATTTCCATGCTTAGTGAAGAACATATCCACCTTGCGTGTCCTTGTTTTGCGATCCAACAAATTTTACGGACAGATTGAATGTCCTGGGACTAATGGTACCTGGCCAATGCTTCAAATCATAGACTTAGCTCATAACAATTTGAGTGGTGAGATAACAGGAACATCTTTGACAACATGGCAGGCAATGATGGCTAATGGAGATGATACCCCAATTGACCTTGGATTCTCATTCCAACCAGGCGGTGGAAGTGGGCTTGATATTTATTATGGAGATGCAATCACAACTACTAGCAAAGGTTTAGAGATGGATCTGGTAAAGATACTTACAGTCTTCACCTCGATTGACTTTTCGAGCAACAAATTCAGTGGATCAATACCTAAGGAAATGGGAGAATTCAAAGCACTATATGTCCTTAACCTGTCCAGTAATTCTTTCACAGGAGAAATTCCATCATCATTTGGTAACATGCGACAACTTGAGTCCTTAGATTTGTCAAAGAACAATCTGAATGGGCAAATTCCATCAGAGTTTGCAGGGCTTAATTTTCTTTCATACTTGAATCTGTCAGACAATGAACTGGTTGGAAGGATCCCAACAAGTACTCAGTTTTCAACATTTCCAAAAGCTGCCTTTGTCGGTAATGAGGGATTATGGGGACCTCCTTTGACGGAGGATAACATAACAACATTGTCACCACCAGCACTAAGTGAAAGCTCTCCTAATCCTGGACATGACATTGATTGGAATATTATCAGCGTTGAAATTGGATATACATTTGGCTTTGGCATTGCCATTGGTTCACTTATGTTTTGCAAGAGATGGAGAGAATGGTATTACAGATCTATGTACAAAATTGTTCTTAAGATCTTCCCTCGGCTTGAACAAAGAATTGGTATTCAAAGAAGACAGGTTCACATGAACCAAAGGTGGAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

1036

Amino Acids

114.02

Weight (kDa)

5.07

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 69	1.7e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	427 - 485	6e-07	Leucine rich repeat
LRR_8	PF13855	524 - 583	3.3e-06	Leucine rich repeat
LRR_8	PF13855	662 - 721	1e-09	Leucine rich repeat
LRR_4	PF12799	686 - 724	1.2e-07	Leucine Rich repeats (2 copies)
LRR_8	PF13855	859 - 917	1.3e-11	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2267
AccB1I	GGYRCC	1 cut(s)	2267
AccB7I	CCANNNNNTGG	1 cut(s)	2414
AccI	GTMKAC	2 cut(s)	1210, 1822
AciI	CCGC	2 cut(s)	1923, 2412
AcoI	YGGCCR	1 cut(s)	2273
AcsI	RAATTY	9 cut(s)	163, 417, 511, 940, 2231, 2531, 2564, 2616, 2688
AcuI	CTGAAG	5 cut(s)	316, 899, 1000, 1484, 1733
AdeI	CACNNNGTG	1 cut(s)	2879
AfaI	GTAC	8 cut(s)	208, 1218, 1274, 1474, 1995, 2269, 2773, 3020
AfiI	CCNNNNNNNGG	8 cut(s)	313, 411, 743, 905, 1400, 1750, 2414, 2897
AflII	CTTAAG	2 cut(s)	778, 3032
AhlI	ACTAGT	1 cut(s)	1213
AjnI	CCWGG	5 cut(s)	742, 2254, 2270, 2407, 2896
AjuI	GAANNNNNNNTTGG	4 cut(s)	809, 841, 3045, 3077
AloI	GAACNNNNNNTCC	2 cut(s)	1624, 1656
Alw26I	GTCTC	4 cut(s)	284, 1188, 1277, 1552
AlwNI	CAGNNNCTG	1 cut(s)	594
AoxI	GGCC	3 cut(s)	315, 661, 2273
ApeKI	GCWGC	1 cut(s)	2798
ApoI	RAATTY	9 cut(s)	163, 417, 511, 940, 2231, 2531, 2564, 2616, 2688
ArsI	GACNNNNNNTTYG	2 cut(s)	1276, 1308
Asp700I	GAANNNNTTC	1 cut(s)	1423
Asp718I	GGTACC	1 cut(s)	2267
AspS9I	GGNCC	6 cut(s)	597, 662, 952, 1585, 2071, 2828
AsuHPI	GGTGA	5 cut(s)	1072, 1804, 2330, 2497, 2856
AvaII	GGWCC	5 cut(s)	597, 952, 1585, 2071, 2828
AxyI	CCTNAGG	1 cut(s)	2550
BalI	TGGCCA	1 cut(s)	2275
BamHI	GGATCC	1 cut(s)	2760
BanI	GGYRCC	1 cut(s)	2267
BbsI	GAAGAC	3 cut(s)	90, 2494, 3082
BbvCI	CCTCAGC	1 cut(s)	2075
BbvI	GCAGC	1 cut(s)	2785
BccI	CCATC	6 cut(s)	1085, 2353, 2470, 2629, 2701, 2985
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 265, 299
BciT130I	CCWGG	5 cut(s)	744, 2256, 2272, 2409, 2898
BcoDI	GTCTC	4 cut(s)	284, 1188, 1277, 1552
BcuI	ACTAGT	1 cut(s)	1213
BfaI	CTAG	8 cut(s)	524, 990, 1214, 1685, 1818, 2045, 2114, 2460
BfmI	CTRYAG	2 cut(s)	60, 966
BfrI	CTTAAG	2 cut(s)	778, 3032
BglII	AGATCT	4 cut(s)	295, 2108, 3011, 3036
BisI	GCNGC	1 cut(s)	2799
BlpI	GCTNAGC	2 cut(s)	635, 684
BlsI	GCNGC	1 cut(s)	2800
BmcAI	AGTACT	4 cut(s)	208, 1218, 1995, 2773
Bme1390I	CCNGG	5 cut(s)	744, 2256, 2272, 2409, 2898
Bme18I	GGWCC	5 cut(s)	597, 952, 1585, 2071, 2828
BmgT120I	GGNCC	6 cut(s)	597, 662, 952, 1585, 2071, 2828
BmiI	GGNNCC	7 cut(s)	599, 883, 953, 1634, 2269, 2762, 2829
BmrFI	CCNGG	5 cut(s)	744, 2256, 2272, 2409, 2898
BmsI	GCATC	2 cut(s)	1971, 2434
BpiI	GAAGAC	3 cut(s)	90, 2494, 3082
BpmI	CTGGAG	2 cut(s)	720, 1301
Bpu10I	CCTNAGC	1 cut(s)	2075
Bpu1102I	GCTNAGC	2 cut(s)	635, 684
BpuEI	CTTGAG	6 cut(s)	238, 397, 521, 1402, 1576, 2669
BsaI	GGTCTC	1 cut(s)	1277
BsaJI	CCNNGG	4 cut(s)	2146, 2255, 2389, 3044
BsaXI	ACNNNNNCTCC	2 cut(s)	1624, 1654
Bsc4I	CCNNNNNNNGG	8 cut(s)	313, 411, 743, 905, 1400, 1750, 2414, 2897
Bse1I	ACTGG	7 cut(s)	599, 737, 829, 1284, 2026, 2595, 2754
Bse21I	CCTNAGG	1 cut(s)	2550
Bse3DI	GCAATG	4 cut(s)	98, 1921, 2361, 2958
BseBI	CCWGG	5 cut(s)	744, 2256, 2272, 2409, 2898
BseDI	CCNNGG	4 cut(s)	2146, 2255, 2389, 3044
BseLI	CCNNNNNNNGG	8 cut(s)	313, 411, 743, 905, 1400, 1750, 2414, 2897
BseMI	GCAATG	4 cut(s)	98, 1921, 2361, 2958
BseNI	ACTGG	7 cut(s)	599, 737, 829, 1284, 2026, 2595, 2754
BseXI	GCAGC	1 cut(s)	2785
BsgI	GTGCAG	1 cut(s)	2107
BshFI	GGCC	3 cut(s)	317, 663, 2275
BshNI	GGYRCC	1 cut(s)	2267
BslFI	GGGAC	5 cut(s)	583, 1183, 1232, 2272, 2841
BslI	CCNNNNNNNGG	8 cut(s)	313, 411, 743, 905, 1400, 1750, 2414, 2897
BsmAI	GTCTC	4 cut(s)	284, 1188, 1277, 1552
BsmFI	GGGAC	5 cut(s)	583, 1183, 1232, 2272, 2841
BsmI	GAATGC	3 cut(s)	1486, 1541, 1979
BsnI	GGCC	3 cut(s)	317, 663, 2275
Bso31I	GGTCTC	1 cut(s)	1277
Bsp1407I	TGTACA	1 cut(s)	3018
Bsp1720I	GCTNAGC	2 cut(s)	635, 684
BspACI	CCGC	2 cut(s)	1923, 2412
BspANI	GGCC	3 cut(s)	317, 663, 2275
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	7 cut(s)	599, 883, 953, 1634, 2269, 2762, 2829
BspMAI	CTGCAG	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	2267
BspTI	CTTAAG	2 cut(s)	778, 3032
BspTNI	GGTCTC	1 cut(s)	1277
BsrDI	GCAATG	4 cut(s)	98, 1921, 2361, 2958
BsrGI	TGTACA	1 cut(s)	3018
BsrI	ACTGG	7 cut(s)	599, 737, 829, 1284, 2026, 2595, 2754
BssECI	CCNNGG	4 cut(s)	2146, 2255, 2389, 3044
BssNAI	GTATAC	1 cut(s)	1823
BssT1I	CCWWGG	1 cut(s)	2389
Bst1107I	GTATAC	1 cut(s)	1823
Bst2UI	CCWGG	5 cut(s)	744, 2256, 2272, 2409, 2898
Bst4CI	ACNGT	9 cut(s)	121, 179, 1056, 1413, 1472, 1717, 2052, 2130, 2500
Bst6I	CTCTTC	7 cut(s)	32, 287, 918, 1193, 1273, 1669, 1855
BstAFI	CTTAAG	2 cut(s)	778, 3032
BstAUI	TGTACA	1 cut(s)	3018
BstC8I	GCNNGC	2 cut(s)	1921, 2352
BstEII	GGTNACC	1 cut(s)	971
BstMAI	GTCTC	4 cut(s)	284, 1188, 1277, 1552
BstMWI	GCNNNNNNNGC	3 cut(s)	1753, 1920, 2360
BstNI	CCWGG	5 cut(s)	744, 2256, 2272, 2409, 2898
BstNSI	RCATGY	1 cut(s)	2641
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	5 cut(s)	742, 2254, 2270, 2407, 2896
BstSFI	CTRYAG	2 cut(s)	60, 966
BstV1I	GCAGC	1 cut(s)	2785
BstV2I	GAAGAC	3 cut(s)	90, 2494, 3082
BstX2I	RGATCY	9 cut(s)	295, 345, 908, 997, 2108, 2479, 2760, 3011, 3036
BstXI	CCANNNNNNTGG	1 cut(s)	1789
BstYI	RGATCY	9 cut(s)	295, 345, 908, 997, 2108, 2479, 2760, 3011, 3036
BstZ17I	GTATAC	1 cut(s)	1823
Bsu36I	CCTNAGG	1 cut(s)	2550
BsuRI	GGCC	3 cut(s)	317, 663, 2275
BtgZI	GCGATG	1 cut(s)	1467
BtsI	GCAGTG	3 cut(s)	595, 1199, 1854
BtsIMutI	CAGTG	9 cut(s)	340, 595, 1024, 1044, 1118, 1199, 1854, 2057, 2542
Cac8I	GCNNGC	2 cut(s)	1921, 2352
CaiI	CAGNNNCTG	1 cut(s)	594
CciI	TCATGA	1 cut(s)	670
Cfr13I	GGNCC	6 cut(s)	597, 662, 952, 1585, 2071, 2828
Csp6I	GTAC	8 cut(s)	207, 1217, 1273, 1473, 1994, 2268, 2772, 3019
CspCI	CAANNNNNGTGG	8 cut(s)	1020, 1055, 1366, 1401, 2296, 2331, 2518, 2553
CviAII	CATG	9 cut(s)	159, 625, 671, 1889, 2178, 2346, 2638, 2903, 3088
CviQI	GTAC	8 cut(s)	207, 1217, 1273, 1473, 1994, 2268, 2772, 3019
DraIII	CACNNNGTG	1 cut(s)	2879
EaeI	YGGCCR	1 cut(s)	2273
Eam1104I	CTCTTC	7 cut(s)	32, 287, 918, 1193, 1273, 1669, 1855
EarI	CTCTTC	7 cut(s)	32, 287, 918, 1193, 1273, 1669, 1855
Eco130I	CCWWGG	1 cut(s)	2389
Eco31I	GGTCTC	1 cut(s)	1277
Eco47I	GGWCC	5 cut(s)	597, 952, 1585, 2071, 2828
Eco57I	CTGAAG	5 cut(s)	316, 899, 1000, 1484, 1733
Eco81I	CCTNAGG	1 cut(s)	2550
Eco91I	GGTNACC	1 cut(s)	971
EcoO109I	RGGNCCY	3 cut(s)	662, 952, 2828
EcoO65I	GGTNACC	1 cut(s)	971
EcoRI	GAATTC	2 cut(s)	163, 2564
EcoRII	CCWGG	5 cut(s)	742, 2254, 2270, 2407, 2896
EcoT14I	CCWWGG	1 cut(s)	2389
ErhI	CCWWGG	1 cut(s)	2389
FaeI	CATG	9 cut(s)	162, 628, 674, 1892, 2181, 2349, 2641, 2906, 3091
FaqI	GGGAC	5 cut(s)	583, 1183, 1232, 2272, 2841
FatI	CATG	9 cut(s)	158, 624, 670, 1888, 2177, 2345, 2637, 2902, 3087
FblI	GTMKAC	2 cut(s)	1210, 1822
Fnu4HI	GCNGC	1 cut(s)	2799
Fsp4HI	GCNGC	1 cut(s)	2799
FspBI	CTAG	8 cut(s)	524, 990, 1214, 1685, 1818, 2045, 2114, 2460
GluI	GCNGC	1 cut(s)	2799
GsuI	CTGGAG	2 cut(s)	720, 1301
HaeIII	GGCC	3 cut(s)	317, 663, 2275
Hin1II	CATG	9 cut(s)	162, 628, 674, 1892, 2181, 2349, 2641, 2906, 3091
HincII	GTYRAC	2 cut(s)	265, 2119
HindII	GTYRAC	2 cut(s)	265, 2119
HindIII	AAGCTT	1 cut(s)	686
HphI	GGTGA	5 cut(s)	1072, 1804, 2330, 2497, 2856
Hpy166II	GTNNAC	7 cut(s)	67, 265, 1211, 1823, 2119, 2972, 3085
Hpy8I	GTNNAC	7 cut(s)	67, 265, 1211, 1823, 2119, 2972, 3085
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	1742, 2087, 2751
HpyCH4III	ACNGT	9 cut(s)	121, 179, 1056, 1413, 1472, 1717, 2052, 2130, 2500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1753, 1920, 2360
Hsp92II	CATG	9 cut(s)	162, 628, 674, 1892, 2181, 2349, 2641, 2906, 3091
KpnI	GGTACC	1 cut(s)	2271
LmnI	GCTCC	3 cut(s)	739, 1632, 1696
Lsp1109I	GCAGC	1 cut(s)	2785
LweI	GCATC	2 cut(s)	1971, 2434
MaeI	CTAG	8 cut(s)	524, 990, 1214, 1685, 1818, 2045, 2114, 2460
MaeIII	GTNAC	9 cut(s)	196, 590, 894, 971, 1678, 1717, 1880, 2633, 2862
MfeI	CAATTG	2 cut(s)	1621, 2382
MflI	RGATCY	9 cut(s)	295, 345, 908, 997, 2108, 2479, 2760, 3011, 3036
MlsI	TGGCCA	1 cut(s)	2275
MluNI	TGGCCA	1 cut(s)	2275
MlyI	GAGTC	4 cut(s)	668, 1145, 1975, 2660
MmeI	TCCRAC	4 cut(s)	1128, 2250, 2428, 2734
Mox20I	TGGCCA	1 cut(s)	2275
MroXI	GAANNNNTTC	1 cut(s)	1423
MscI	TGGCCA	1 cut(s)	2275
MslI	CAYNNNNRTG	2 cut(s)	629, 2176
Msp20I	TGGCCA	1 cut(s)	2275
MspCI	CTTAAG	2 cut(s)	778, 3032
MspR9I	CCNGG	5 cut(s)	744, 2256, 2272, 2409, 2898
MunI	CAATTG	2 cut(s)	1621, 2382
Mva1269I	GAATGC	3 cut(s)	1486, 1541, 1979
MvaI	CCWGG	5 cut(s)	744, 2256, 2272, 2409, 2898
MwoI	GCNNNNNNNGC	3 cut(s)	1753, 1920, 2360
NlaIII	CATG	9 cut(s)	162, 628, 674, 1892, 2181, 2349, 2641, 2906, 3091
NlaIV	GGNNCC	7 cut(s)	599, 883, 953, 1634, 2269, 2762, 2829
NmeAIII	GCCGAG	1 cut(s)	3025
NmuCI	GTSAC	3 cut(s)	590, 1717, 2862
NspI	RCATGY	1 cut(s)	2641
PagI	TCATGA	1 cut(s)	670
PctI	GAATGC	3 cut(s)	1486, 1541, 1979
PdmI	GAANNNNTTC	1 cut(s)	1423
PfeI	GAWTC	6 cut(s)	131, 245, 747, 1615, 2394, 2731
PflMI	CCANNNNNTGG	1 cut(s)	2414
PfoI	TCCNGGA	2 cut(s)	742, 2896
PkrI	GCNGC	1 cut(s)	2800
PleI	GAGTC	4 cut(s)	668, 1145, 1975, 2659
PpsI	GAGTC	4 cut(s)	668, 1145, 1975, 2659
PpuMI	RGGWCCY	2 cut(s)	952, 2828
Psp5II	RGGWCCY	2 cut(s)	952, 2828
Psp6I	CCWGG	5 cut(s)	742, 2254, 2270, 2407, 2896
PspEI	GGTNACC	1 cut(s)	971
PspGI	CCWGG	5 cut(s)	742, 2254, 2270, 2407, 2896
PspN4I	GGNNCC	7 cut(s)	599, 883, 953, 1634, 2269, 2762, 2829
PspPI	GGNCC	6 cut(s)	597, 662, 952, 1585, 2071, 2828
PspPPI	RGGWCCY	2 cut(s)	952, 2828
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	594
PsuI	RGATCY	9 cut(s)	295, 345, 908, 997, 2108, 2479, 2760, 3011, 3036
RsaI	GTAC	8 cut(s)	208, 1218, 1274, 1474, 1995, 2269, 2773, 3020
RsaNI	GTAC	8 cut(s)	207, 1217, 1273, 1473, 1994, 2268, 2772, 3019
RseI	CAYNNNNRTG	2 cut(s)	629, 2176
SatI	GCNGC	1 cut(s)	2799
Sau96I	GGNCC	6 cut(s)	597, 662, 952, 1585, 2071, 2828
ScaI	AGTACT	4 cut(s)	208, 1218, 1995, 2773
SchI	GAGTC	4 cut(s)	668, 1145, 1975, 2660
ScrFI	CCNGG	5 cut(s)	744, 2256, 2272, 2409, 2898
SfaNI	GCATC	2 cut(s)	1971, 2434
SfcI	CTRYAG	2 cut(s)	60, 966
SinI	GGWCC	5 cut(s)	597, 952, 1585, 2071, 2828
SmiMI	CAYNNNNRTG	2 cut(s)	629, 2176
SmlI	CTYRAG	8 cut(s)	253, 376, 500, 778, 1381, 1555, 2648, 3032
SmoI	CTYRAG	8 cut(s)	253, 376, 500, 778, 1381, 1555, 2648, 3032
SpeI	ACTAGT	1 cut(s)	1213
SsiI	CCGC	2 cut(s)	1923, 2412
SspI	AATATT	1 cut(s)	2920
SspMI	CTAG	8 cut(s)	524, 990, 1214, 1685, 1818, 2045, 2114, 2460
StyD4I	CCNGG	5 cut(s)	742, 2254, 2270, 2407, 2896
StyI	CCWWGG	1 cut(s)	2389
TaaI	ACNGT	9 cut(s)	121, 179, 1056, 1413, 1472, 1717, 2052, 2130, 2500
TaqI	TCGA	7 cut(s)	129, 285, 1345, 1415, 1728, 2510, 2522
TaqII	GACCGA	1 cut(s)	215
TatI	WGTACW	5 cut(s)	206, 1216, 1993, 2771, 3018
TfiI	GAWTC	6 cut(s)	131, 245, 747, 1615, 2394, 2731
TscAI	CASTG	9 cut(s)	340, 595, 1024, 1044, 1118, 1206, 1861, 2057, 2542
TseFI	GTSAC	3 cut(s)	590, 1717, 2862
TseI	GCWGC	1 cut(s)	2798
Tsp45I	GTSAC	3 cut(s)	590, 1717, 2862
TspGWI	ACGGA	2 cut(s)	2253, 2855
TspRI	CASTG	9 cut(s)	340, 595, 1024, 1044, 1118, 1206, 1861, 2057, 2542
Van91I	CCANNNNNTGG	1 cut(s)	2414
Vha464I	CTTAAG	2 cut(s)	778, 3032
VpaK11BI	GGWCC	5 cut(s)	597, 952, 1585, 2071, 2828
XapI	RAATTY	9 cut(s)	163, 417, 511, 940, 2231, 2531, 2564, 2616, 2688
XbaI	TCTAGA	3 cut(s)	989, 1684, 2044
XceI	RCATGY	1 cut(s)	2641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2411
XmiI	GTMKAC	2 cut(s)	1210, 1822
XmnI	GAANNNNTTC	1 cut(s)	1423
XspI	CTAG	8 cut(s)	524, 990, 1214, 1685, 1818, 2045, 2114, 2460
ZrmI	AGTACT	4 cut(s)	208, 1218, 1995, 2773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.