Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Forward (+)

65654998 .. 65657787

Gene Structure 2790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTCTACCACGGAATCTCCGACTGCTGCTAAGAAAGTGGTCATTCATCTCAGAGCTACTGGCGATGCCCCTATACTGAAGCAAGCCAAATTCAAGATACCTGGAACGGACAAGTTTGCTAAAGTGATTGACTTTTTAAGGAGGCAACTTCACCGGGATACGTTGTTTGTGTATGTCAATAGTGCATTCTCGCCAAACCCAGATGAATTGGTGATGGATCTGTATAATGTAAGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

79

Amino Acids

8.88

Weight (kDa)

9.45

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 76	6e-23	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	143, 223
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	208
BciT130I	CCWGG	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	155
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	102, 155
BmrFI	CCNGG	2 cut(s)	102, 155
BmsI	GCATC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	1 cut(s)	64
BseXI	GCAGC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	30, 50
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	100, 153
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	84
CviJI	RGCY	2 cut(s)	56, 86
CviKI_1	RGCY	2 cut(s)	56, 86
DdeI	CTNAG	2 cut(s)	30, 50
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	100
FaiI	YATR	4 cut(s)	74, 174, 225, 238
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	154
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	2 cut(s)	143, 223
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	21, 53
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	6
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	30, 50
HpySE526I	ACGT	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	45, 87, 114, 167, 213
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	161
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	2 cut(s)	89, 206
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	137
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	2 cut(s)	102, 155
Mva1269I	GAATGC	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	102
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	102, 155
SetI	ASST	3 cut(s)	58, 103, 164
SfaNI	GCATC	1 cut(s)	55
Sse9I	AATT	2 cut(s)	89, 206
StyD4I	CCNGG	2 cut(s)	100, 153
TaiI	ACGT	1 cut(s)	164
TasI	AATT	2 cut(s)	89, 206
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	35, 219
TspGWI	ACGGA	2 cut(s)	26, 122
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.