Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004126

Physical Location & Seq

Genomic Coordinates Reverse (-)

22654809 .. 22657371

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCTACCACGGAATCTCCGACTGCTGCTAAGAAAGTGGTCATTCATCTCAGAGCTACTGGCGATGCCCCTATACTGAAGCAAGCCAAATTCAAGGTATTTCTCCTTGAACAACAGATACCTGGAACAGACAAGTTTGCTAAAGTGATTGACTTTTTAAGGAGGCAACTTCACCGGGATACGTTGTTTGTGTATGTCAATAGTGCATTCTCGCCAAACCCAGATGAATTGGTGATGGATCTGTATAATAATTTTGGTTTTGATGGTAAACTGGTGGTCAATTATGCTTGTTCCATGGCATGGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04138 ko04140 ko04621 ko04622 map04068 map04136 map04138 map04140 map04621 map04622

Pfam Domains

Protein Families

APG12

Protein Analysis

102

Amino Acids

11.5

Weight (kDa)

8.79

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG12	PF04110	12 - 102	1.5e-30	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54210 AT1G54210 AT3G13970 AT3G13970 AT3G13970 AT3G13970
fragaria_vesca	FvH4_6g34660 FvH4_6g34660 FvH4_6g34660
malus_domestica	MD09G1183900.v1.1
prunus_persica	Prupe.3G042200_v2.0.a1 Prupe.3G042200_v2.0.a1
pyrus_communis	pycom09g10140
rosa_chinensis	RchiOBHm_Chr2g0145211 RchiOBHm_Chr3g0490611 RchiOBHm_Chr5g0053491
rosa_multiflora	Rmu_sc0001298.1_g000012 Rmu_sc0005966.1_g000021
rosa_roxburghii	Rroxscaffold_1G00040040 Rroxscaffold_1G00040070 Rroxscaffold_1G00040780 Rroxscaffold_2G00100790 Rroxscaffold_6G00393370
rosa_rugosa	Rorug02G0391300 Rorug02G0391400 Rorug03G0244700 Rorug05G0280300
rosa_samantha	Rh2AG444100 Rh2BG455000 Rh2CG431000 Rh5BG363800
rosa_wichuraiana	Rw2G036290 Rw5G033250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	94, 110
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	2 cut(s)	164, 244
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	2 cut(s)	229, 257
BciT130I	CCWGG	1 cut(s)	123
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	123, 176
BmrFI	CCNGG	2 cut(s)	123, 176
BmsI	GCATC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	9, 294
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	64, 276
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	2 cut(s)	9, 294
BseLI	CCNNNNNNNGG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	64
BseNI	ACTGG	2 cut(s)	64, 276
BseXI	GCAGC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	64, 276
BssECI	CCNNGG	2 cut(s)	9, 294
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	30, 50
BstDSI	CCRYGG	2 cut(s)	9, 294
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	121, 174
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	172
BtgI	CCRYGG	2 cut(s)	9, 294
BtgZI	GCGATG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	84
CviAII	CATG	2 cut(s)	295, 300
CviJI	RGCY	3 cut(s)	56, 86, 306
CviKI_1	RGCY	3 cut(s)	56, 86, 306
DdeI	CTNAG	2 cut(s)	30, 50
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	298, 303
FaiI	YATR	6 cut(s)	74, 195, 246, 285, 296, 301
FatI	CATG	2 cut(s)	294, 299
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	2 cut(s)	298, 303
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	2 cut(s)	164, 244
Hpy166II	GTNNAC	2 cut(s)	6, 269
Hpy188I	TCNGA	2 cut(s)	21, 53
Hpy8I	GTNNAC	2 cut(s)	6, 269
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	30, 50
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	2 cut(s)	298, 303
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	6 cut(s)	45, 108, 135, 188, 234, 257
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	182
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	4 cut(s)	89, 227, 250, 280
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	158
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	123, 176
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	123
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	298, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	123, 176
SetI	ASST	4 cut(s)	58, 99, 124, 185
SfaNI	GCATC	1 cut(s)	55
Sse9I	AATT	4 cut(s)	89, 227, 250, 280
StyD4I	CCNGG	2 cut(s)	121, 174
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	185
TasI	AATT	4 cut(s)	89, 227, 250, 280
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	2 cut(s)	35, 240
TspGWI	ACGGA	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	300
XapI	RAATTY	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.